RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 ALYREFQ86V81 257 aaKnown RBP9.11□□□□□ -0.95
NUP88-211ENST00000575976 SPATA2LQ8IUW3 424 aaPredicted RBP9.11□□□□□ -0.95
NUP88-211ENST00000575976 TTC9BQ8N6N2 239 aa9.11□□□□□ -0.95
NUP88-211ENST00000575976 SPPL2BQ8TCT7 592 aa9.11□□□□□ -0.95
NUP88-211ENST00000575976 CASP10Q92851 521 aa9.11□□□□□ -0.95
NUP88-211ENST00000575976 CYFIP2Q96F07 1278 aa9.11□□□□□ -0.95
NUP88-211ENST00000575976 HEXIM2Q96MH2 286 aaKnown RBP9.11□□□□□ -0.95
NUP88-211ENST00000575976 STK33Q9BYT3 514 aa9.11□□□□□ -0.95
NUP88-211ENST00000575976 RHOBTB2Q9BYZ6 727 aa9.11□□□□□ -0.95
NUP88-211ENST00000575976 CYP4F11Q9HBI6 524 aa9.11□□□□□ -0.95
NUP88-211ENST00000575976 MAN1C1Q9NR34 630 aa9.11□□□□□ -0.95
NUP88-211ENST00000575976 FAM49BQ9NUQ9 324 aa9.11□□□□□ -0.95
NUP88-211ENST00000575976 ABI2Q9NYB9 513 aaPredicted RBP9.11□□□□□ -0.95
NUP88-211ENST00000575976 FBXW11Q9UKB1 542 aa9.11□□□□□ -0.95
NUP88-211ENST00000575976 SLC27A5Q9Y2P5 690 aa9.11□□□□□ -0.95
NUP88-211ENST00000575976 DAAM1Q9Y4D1 1078 aa9.11□□□□□ -0.95
NUP88-211ENST00000575976 PCDHB5Q9Y5E4 795 aa9.11□□□□□ -0.95
NUP88-211ENST00000575976 MYO9BQ13459 2157 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 MUC6Q6W4X9 2439 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 F8VZ95 297 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 CYP26A1O43174 497 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 SOAT2O75908 522 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 C8AP07357 584 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 PAEPP09466 180 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 HAPLN1P10915 354 aaPredicted RBP9.1□□□□□ -0.95
NUP88-211ENST00000575976 VDRP11473 427 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 CD19P15391 556 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 TRIM21P19474 475 aaKnown RBP9.1□□□□□ -0.95
NUP88-211ENST00000575976 BDNFP23560 247 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 CYP2F1P24903 491 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 ZNF75DP51815 510 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 JAM2P57087 298 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 DLX2Q07687 328 aaPredicted RBP9.1□□□□□ -0.95
NUP88-211ENST00000575976 COL19A1Q14993 1142 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 CTC1Q2NKJ3 1217 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 MGAT5BQ3V5L5 792 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 FIGNQ5HY92 759 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 PPP1R26Q5T8A7 1209 aaPredicted RBP9.1□□□□□ -0.95
NUP88-211ENST00000575976 TMEM184AQ6ZMB5 413 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 C4orf50Q6ZRC1 276 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 EP400NLQ6ZTU2 488 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 CACNA2D4Q7Z3S7 1137 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 GPIHBP1Q8IV16 184 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 FAM71AQ8IYT1 594 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 FUKQ8N0W3 1084 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 SLC7A14Q8TBB6 771 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 SLC2A14Q8TDB8 520 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 C2orf15Q8WU43 125 aaKnown RBP9.1□□□□□ -0.95
NUP88-211ENST00000575976 HDAC7Q8WUI4 952 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 TFAP2BQ92481 460 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 BAP1Q92560 729 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 PABPC5Q96DU9 382 aaKnown RBP9.1□□□□□ -0.95
NUP88-211ENST00000575976 SPAG5Q96R06 1193 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 HNRNPABQ99729 332 aaKnown RBP9.1□□□□□ -0.95
NUP88-211ENST00000575976 ZSWIM1Q9BR11 485 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 MED10Q9BTT4 135 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 NUP58Q9BVL2 599 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 ZNF518BQ9C0D4 1074 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 TTYH3Q9C0H2 523 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 DNAI2Q9GZS0 605 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 PLEKHA4Q9H4M7 779 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 ACP6Q9NPH0 428 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 CLDND1Q9NY35 253 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 CLEC1BQ9P126 229 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 CEP72Q9P209 647 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 MYO7AQ13402 2215 aa9.1□□□□□ -0.95
NUP88-211ENST00000575976 TCF20Q9UGU0 1960 aaKnown RBP9.1□□□□□ -0.95
NUP88-211ENST00000575976 ITIH6Q6UXX5 1313 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 PLXNA3P51805 1871 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 FSD2A1L4K1 749 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 PRRG1O14668 218 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 NCK2O43639 380 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 GPR37L1O60883 481 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 TBX10O75333 385 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 RFPL2O75678 378 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 ZMYND10O75800 440 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 GFPT2O94808 682 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 BMP1P13497 986 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 BRD2P25440 801 aaKnown RBP9.09□□□□□ -0.95
NUP88-211ENST00000575976 ADORA2BP29275 332 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 SSTR3P32745 418 aaPredicted RBP9.09□□□□□ -0.95
NUP88-211ENST00000575976 CLCN1P35523 988 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 SOX5P35711 763 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 LTBRP36941 435 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 STAT1P42224 750 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 TUFMP49411 452 aaKnown RBP9.09□□□□□ -0.95
NUP88-211ENST00000575976 GPR15P49685 360 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 CACNA2D1P54289 1103 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 TWF1Q12792 350 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 SKIV2LQ15477 1246 aaKnown RBP9.09□□□□□ -0.95
NUP88-211ENST00000575976 DDR2Q16832 855 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 CFAP221Q4G0U5 840 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 SGO2Q562F6 1265 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 PPM1LQ5SGD2 360 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 LIN9Q5TKA1 542 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 ARHGAP17Q68EM7 881 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 SMYD5Q6GMV2 418 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 ANKRD54Q6NXT1 300 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 SYCE2Q6PIF2 218 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 CCDC149Q6ZUS6 474 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms