RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, human

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMG6-213	ENST00000573166	C2orf54	Q08AI8	447 aa		10.63	□□□□□ -0.71
SMG6-213	ENST00000573166	TARBP2	Q15633	366 aa	Known RBP	10.63	□□□□□ -0.71
SMG6-213	ENST00000573166	CCDC63	Q8NA47	563 aa		10.63	□□□□□ -0.71
SMG6-213	ENST00000573166	GOLPH3	Q9H4A6	298 aa		10.63	□□□□□ -0.71
SMG6-213	ENST00000573166	FASTKD2	Q9NYY8	710 aa	Known RBP eCLIP	10.63	□□□□□ -0.71
SMG6-213	ENST00000573166	AIPL1	Q9NZN9	384 aa		10.63	□□□□□ -0.71
SMG6-213	ENST00000573166	SAMD15	Q9P1V8	674 aa		10.63	□□□□□ -0.71
SMG6-213	ENST00000573166	VPS18	Q9P253	973 aa		10.63	□□□□□ -0.71
SMG6-213	ENST00000573166	SH3BP1	Q9Y3L3	701 aa		10.63	□□□□□ -0.71
SMG6-213	ENST00000573166	ARAP2	Q8WZ64	1704 aa		10.63	□□□□□ -0.71
SMG6-213	ENST00000573166		A0A1B0GUL6	1792 aa		10.63	□□□□□ -0.71
SMG6-213	ENST00000573166	CYBB	P04839	570 aa		10.63	□□□□□ -0.71
SMG6-213	ENST00000573166	PAEP	P09466	180 aa		10.63	□□□□□ -0.71
SMG6-213	ENST00000573166	FGFR1	P11362	822 aa		10.63	□□□□□ -0.71
SMG6-213	ENST00000573166	PTPN1	P18031	435 aa	Known RBP	10.63	□□□□□ -0.71
SMG6-213	ENST00000573166	OAS2	P29728	719 aa	Known RBP	10.63	□□□□□ -0.71
SMG6-213	ENST00000573166	RECQL	P46063	649 aa	Predicted RBP	10.63	□□□□□ -0.71
SMG6-213	ENST00000573166	ARHGAP15	Q53QZ3	475 aa		10.63	□□□□□ -0.71
SMG6-213	ENST00000573166	ARHGAP18	Q8N392	663 aa		10.63	□□□□□ -0.71
SMG6-213	ENST00000573166	BBOF1	Q8ND07	529 aa		10.63	□□□□□ -0.71
SMG6-213	ENST00000573166	EMILIN2	Q9BXX0	1053 aa		10.63	□□□□□ -0.71
SMG6-213	ENST00000573166	STMN4	Q9H169	189 aa	Predicted RBP	10.63	□□□□□ -0.71
SMG6-213	ENST00000573166	ACP6	Q9NPH0	428 aa		10.63	□□□□□ -0.71
SMG6-213	ENST00000573166	ALG6	Q9Y672	507 aa		10.63	□□□□□ -0.71
SMG6-213	ENST00000573166	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	10.62	□□□□□ -0.71
SMG6-213	ENST00000573166		M0QYT0	321 aa		10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	HEXIM1	O94992	359 aa	Known RBP	10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	LSM8	O95777	96 aa	Known RBP	10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	CKB	P12277	381 aa		10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	IGFBP4	P22692	258 aa		10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	ADSS	P30520	456 aa		10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	ZCWPW2	Q504Y3	356 aa		10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	CCDC91	Q7Z6B0	441 aa		10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	C10orf67	Q8IYJ2	551 aa		10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	CCDC97	Q96F63	343 aa	Predicted RBP	10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	DDX50	Q9BQ39	737 aa	Known RBP	10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	SLC28A3	Q9HAS3	691 aa		10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	GNE	Q9Y223	722 aa	Known RBP	10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	COMT	P21964	271 aa		10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	EPHB1	P54762	984 aa		10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	SLC10A6	Q3KNW5	377 aa		10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	USP41	Q3LFD5	358 aa		10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	C9orf57	Q5W0N0	161 aa		10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	UNC93A	Q86WB7	457 aa		10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	DNAAF5	Q86Y56	855 aa		10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	SMARCD1	Q96GM5	515 aa		10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	OSBPL9	Q96SU4	736 aa		10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	ELOVL4	Q9GZR5	314 aa		10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	DMAP1	Q9NPF5	467 aa	Predicted RBP	10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	KLHL8	Q9P2G9	620 aa	Predicted RBP	10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	DERA	Q9Y315	318 aa		10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	POLR2A	P24928	1970 aa	Known RBP	10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	IVL	P07476	585 aa		10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	CCDC130	P13994	396 aa		10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	NNMT	P40261	264 aa		10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	HARS2	P49590	506 aa	Known RBP	10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	GABPB1	Q06547	395 aa	Predicted RBP	10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	KCNMA1	Q12791	1236 aa		10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	TERF2	Q15554	542 aa		10.62	□□□□□ -0.71
SMG6-213	ENST00000573166	ARL5C	A6NH57	179 aa		10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	CST3	P01034	146 aa	Predicted RBP	10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	SLC4A1	P02730	911 aa		10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	TUFM	P49411	452 aa	Known RBP	10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	COG7	P83436	770 aa		10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	ITIH3	Q06033	890 aa		10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	NFIL3	Q16649	462 aa		10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	SMTNL2	Q2TAL5	461 aa		10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	EMC1	Q8N766	993 aa		10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	ZSWIM2	Q8NEG5	633 aa		10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	RNPC3	Q96LT9	517 aa	Known RBP	10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	PACSIN1	Q9BY11	444 aa		10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	FAM107B	Q9H098	131 aa		10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	IGFLR1	Q9H665	355 aa		10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	EPB41L5	Q9HCM4	733 aa		10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	INTU	Q9ULD6	942 aa		10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	CCDC188	H7C350	402 aa		10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	EPHB6	O15197	1021 aa		10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	ZMYND10	O75800	440 aa		10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	EOMES	O95936	686 aa		10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	CALCA	P01258	141 aa		10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	MYL4	P12829	197 aa		10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	PLTP	P55058	493 aa		10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	ANKS3	Q6ZW76	656 aa		10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	SERINC5	Q86VE9	423 aa		10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	CHSY1	Q86X52	802 aa		10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	C1orf127	Q8N9H9	656 aa		10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	CDHR5	Q9HBB8	845 aa		10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	SPG21	Q9NZD8	308 aa		10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	RBM47	A0AV96	593 aa	Known RBP	10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	ANKRD65	E5RJM6	399 aa		10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	BUB1B	O60566	1050 aa	Predicted RBP	10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	MICAL2	O94851	1124 aa		10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	FBXO21	O94952	628 aa		10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	MARS	P56192	900 aa	Known RBP	10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	MRPS25	P82663	173 aa	Known RBP	10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	FPGS	Q05932	587 aa		10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	ADIG	Q0VDE8	80 aa		10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	HDX	Q7Z353	690 aa		10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	NOP9	Q86U38	636 aa	Known RBP	10.61	□□□□□ -0.71
SMG6-213	ENST00000573166	ZC3H18	Q86VM9	953 aa	Known RBP	10.61	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms