RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 XPO7Q9UIA9 1087 aaKnown RBP17.94■□□□□ 0.46
VPS53-215ENST00000573028 DRG1Q9Y295 367 aaKnown RBP17.94■□□□□ 0.46
VPS53-215ENST00000573028 MT-ND3P03897 115 aa17.93■□□□□ 0.46
VPS53-215ENST00000573028 KRT19P08727 400 aa17.93■□□□□ 0.46
VPS53-215ENST00000573028 SRGAP2CP0DJJ0 459 aa17.93■□□□□ 0.46
VPS53-215ENST00000573028 TPBGLP0DKB5 382 aa17.93■□□□□ 0.46
VPS53-215ENST00000573028 IL1R2P27930 398 aa17.93■□□□□ 0.46
VPS53-215ENST00000573028 YWHAGP61981 247 aaKnown RBP eCLIP17.93■□□□□ 0.46
VPS53-215ENST00000573028 TAF5Q15542 800 aa17.93■□□□□ 0.46
VPS53-215ENST00000573028 EFHC2Q5JST6 749 aa17.93■□□□□ 0.46
VPS53-215ENST00000573028 PPIL6Q8IXY8 311 aa17.93■□□□□ 0.46
VPS53-215ENST00000573028 TMEM130Q8N3G9 435 aa17.93■□□□□ 0.46
VPS53-215ENST00000573028 PRR11Q96HE9 360 aaPredicted RBP17.93■□□□□ 0.46
VPS53-215ENST00000573028 FAM111AQ96PZ2 611 aa17.93■□□□□ 0.46
VPS53-215ENST00000573028 ZNF302Q9NR11 478 aa17.93■□□□□ 0.46
VPS53-215ENST00000573028 MYH9P35579 1960 aaKnown RBP17.93■□□□□ 0.46
VPS53-215ENST00000573028 A0A0B4J269 797 aa17.93■□□□□ 0.46
VPS53-215ENST00000573028 PIK3R2O00459 728 aa17.93■□□□□ 0.46
VPS53-215ENST00000573028 TMEM63AO94886 807 aa17.93■□□□□ 0.46
VPS53-215ENST00000573028 ITGAVP06756 1048 aa17.93■□□□□ 0.46
VPS53-215ENST00000573028 KRT3P12035 628 aa17.93■□□□□ 0.46
VPS53-215ENST00000573028 ATP4AP20648 1035 aa17.93■□□□□ 0.46
VPS53-215ENST00000573028 RAP1GAPP47736 663 aa17.93■□□□□ 0.46
VPS53-215ENST00000573028 MCCD1P59942 119 aaPredicted RBP17.93■□□□□ 0.46
VPS53-215ENST00000573028 PIGHQ14442 188 aaPredicted RBP17.93■□□□□ 0.46
VPS53-215ENST00000573028 TMEM132AQ24JP5 1023 aa17.93■□□□□ 0.46
VPS53-215ENST00000573028 SCYL3Q8IZE3 742 aa17.93■□□□□ 0.46
VPS53-215ENST00000573028 INPP5DQ92835 1189 aa17.93■□□□□ 0.46
VPS53-215ENST00000573028 MANSC1Q9H8J5 431 aa17.93■□□□□ 0.46
VPS53-215ENST00000573028 ZNRF3Q9ULT6 936 aa17.93■□□□□ 0.46
VPS53-215ENST00000573028 LPXNO60711 386 aa17.93■□□□□ 0.46
VPS53-215ENST00000573028 ZWINTO95229 277 aa17.93■□□□□ 0.46
VPS53-215ENST00000573028 LDHAP00338 332 aaKnown RBP17.93■□□□□ 0.46
VPS53-215ENST00000573028 HMGCS2P54868 508 aa17.93■□□□□ 0.46
VPS53-215ENST00000573028 DENND1BQ6P3S1 775 aa17.93■□□□□ 0.46
VPS53-215ENST00000573028 CTAGE3PQ8IX95 158 aa17.93■□□□□ 0.46
VPS53-215ENST00000573028 PDIK1LQ8N165 341 aa17.93■□□□□ 0.46
VPS53-215ENST00000573028 WDTC1Q8N5D0 677 aa17.93■□□□□ 0.46
VPS53-215ENST00000573028 NKD2Q969F2 451 aaPredicted RBP17.93■□□□□ 0.46
VPS53-215ENST00000573028 METTL5Q9NRN9 209 aaKnown RBP17.93■□□□□ 0.46
VPS53-215ENST00000573028 MAP3K20Q9NYL2 800 aaKnown RBP17.93■□□□□ 0.46
VPS53-215ENST00000573028 CNTNAP2Q9UHC6 1331 aa17.92■□□□□ 0.46
VPS53-215ENST00000573028 PEX10O60683 326 aa17.92■□□□□ 0.46
VPS53-215ENST00000573028 MAP3K6O95382 1288 aa17.92■□□□□ 0.46
VPS53-215ENST00000573028 SUPT20HL2P0C7V6 817 aa17.92■□□□□ 0.46
VPS53-215ENST00000573028 GCLCP48506 637 aaPredicted RBP17.92■□□□□ 0.46
VPS53-215ENST00000573028 PTDSS1P48651 473 aaKnown RBP17.92■□□□□ 0.46
VPS53-215ENST00000573028 SUPT20HL1Q3ZLR7 823 aa17.92■□□□□ 0.46
VPS53-215ENST00000573028 NAIF1Q69YI7 327 aaPredicted RBP17.92■□□□□ 0.46
VPS53-215ENST00000573028 DRICH1Q6PGQ1 229 aaPredicted RBP17.92■□□□□ 0.46
VPS53-215ENST00000573028 THNSL1Q8IYQ7 743 aa17.92■□□□□ 0.46
VPS53-215ENST00000573028 KCTD6Q8NC69 237 aa17.92■□□□□ 0.46
VPS53-215ENST00000573028 SLC35B2Q8TB61 432 aa17.92■□□□□ 0.46
VPS53-215ENST00000573028 DTX3LQ8TDB6 740 aa17.92■□□□□ 0.46
VPS53-215ENST00000573028 TSSK1BQ9BXA7 367 aa17.92■□□□□ 0.46
VPS53-215ENST00000573028 TRIM55Q9BYV6 548 aa17.92■□□□□ 0.46
VPS53-215ENST00000573028 ARL8BQ9NVJ2 186 aa17.92■□□□□ 0.46
VPS53-215ENST00000573028 DOCK5Q9H7D0 1870 aa17.92■□□□□ 0.46
VPS53-215ENST00000573028 HAUS5O94927 633 aa17.92■□□□□ 0.46
VPS53-215ENST00000573028 PTPN4P29074 926 aa17.92■□□□□ 0.46
VPS53-215ENST00000573028 SERPINB3P29508 390 aa17.92■□□□□ 0.46
VPS53-215ENST00000573028 CPA2P48052 419 aa17.92■□□□□ 0.46
VPS53-215ENST00000573028 RTP1P59025 263 aa17.92■□□□□ 0.46
VPS53-215ENST00000573028 PSMC1P62191 440 aaKnown RBP17.92■□□□□ 0.46
VPS53-215ENST00000573028 GHRHRQ02643 423 aa17.92■□□□□ 0.46
VPS53-215ENST00000573028 FSTL1Q12841 308 aa17.92■□□□□ 0.46
VPS53-215ENST00000573028 MUM1Q2TAK8 710 aa17.92■□□□□ 0.46
VPS53-215ENST00000573028 DSTYKQ6XUX3 929 aa17.92■□□□□ 0.46
VPS53-215ENST00000573028 NIM1KQ8IY84 436 aa17.92■□□□□ 0.46
VPS53-215ENST00000573028 WDR83Q9BRX9 315 aaKnown RBP17.92■□□□□ 0.46
VPS53-215ENST00000573028 PORCNQ9H237 461 aa17.92■□□□□ 0.46
VPS53-215ENST00000573028 DDX56Q9NY93 547 aaKnown RBP17.92■□□□□ 0.46
VPS53-215ENST00000573028 AVILO75366 819 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 BGNP21810 368 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 MARK3P27448 753 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 CCNHP51946 323 aaPredicted RBP17.91■□□□□ 0.46
VPS53-215ENST00000573028 GNPTABQ3T906 1256 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 SLC45A4Q5BKX6 768 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 VPS52Q8N1B4 723 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 LRRN4Q8WUT4 740 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 MIPEPQ99797 713 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 ENO4A6NNW6 628 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 C2CD2LO14523 706 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 WFS1O76024 890 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 ASS1P00966 412 aaKnown RBP17.91■□□□□ 0.46
VPS53-215ENST00000573028 OATP04181 439 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 ARFIP2P53365 341 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 EIF3EP60228 445 aaKnown RBP17.91■□□□□ 0.46
VPS53-215ENST00000573028 TGFB2P61812 414 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 CXCL9Q07325 125 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 PTPN20Q4JDL3 420 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 KHDC1Q4VXA5 237 aaKnown RBP17.91■□□□□ 0.46
VPS53-215ENST00000573028 NPNTQ6UXI9 565 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 RGS9BPQ6ZS82 235 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 IGDCC3Q8IVU1 814 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 MCUR1Q96AQ8 359 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 MYOZ2Q9NPC6 264 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 ARMCX1Q9P291 453 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 KANSL3Q9P2N6 904 aa17.91■□□□□ 0.46
VPS53-215ENST00000573028 LRCH4O75427 683 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms