RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 HOXD12P35452 270 aa6.8□□□□□ -1.32
VPS53-212ENST00000572259 KPNA1P52294 538 aaPredicted RBP6.8□□□□□ -1.32
VPS53-212ENST00000572259 PDE1AP54750 535 aa6.8□□□□□ -1.32
VPS53-212ENST00000572259 IRF9Q00978 393 aa6.8□□□□□ -1.32
VPS53-212ENST00000572259 GRIN1Q05586 938 aa6.8□□□□□ -1.32
VPS53-212ENST00000572259 BLMHQ13867 455 aa6.8□□□□□ -1.32
VPS53-212ENST00000572259 PKN2Q16513 984 aaKnown RBP6.8□□□□□ -1.32
VPS53-212ENST00000572259 MLANAQ16655 118 aa6.8□□□□□ -1.32
VPS53-212ENST00000572259 CERKLQ49MI3 558 aaPredicted RBP6.8□□□□□ -1.32
VPS53-212ENST00000572259 KIAA1614Q5VZ46 1190 aa6.8□□□□□ -1.32
VPS53-212ENST00000572259 BTBD8Q5XKL5 378 aa6.8□□□□□ -1.32
VPS53-212ENST00000572259 PRR23BQ6ZRT6 265 aa6.8□□□□□ -1.32
VPS53-212ENST00000572259 OTOP1Q7RTM1 612 aa6.8□□□□□ -1.32
VPS53-212ENST00000572259 ZBTB34Q8NCN2 500 aa6.8□□□□□ -1.32
VPS53-212ENST00000572259 FERMT2Q96AC1 680 aa6.8□□□□□ -1.32
VPS53-212ENST00000572259 TBC1D20Q96BZ9 403 aa6.8□□□□□ -1.32
VPS53-212ENST00000572259 RIPOR3Q96MK2 946 aa6.8□□□□□ -1.32
VPS53-212ENST00000572259 TBCBQ99426 244 aa6.8□□□□□ -1.32
VPS53-212ENST00000572259 RIOK1Q9BRS2 568 aaKnown RBP6.8□□□□□ -1.32
VPS53-212ENST00000572259 NACAP1Q9BZK3 213 aa6.8□□□□□ -1.32
VPS53-212ENST00000572259 VPS11Q9H270 941 aa6.8□□□□□ -1.32
VPS53-212ENST00000572259 PCIF1Q9H4Z3 704 aa6.8□□□□□ -1.32
VPS53-212ENST00000572259 BCAS3Q9H6U6 928 aa6.8□□□□□ -1.32
VPS53-212ENST00000572259 ARMT1Q9H993 441 aa6.8□□□□□ -1.32
VPS53-212ENST00000572259 ZNF287Q9HBT7 754 aa6.8□□□□□ -1.32
VPS53-212ENST00000572259 VTA1Q9NP79 307 aa6.8□□□□□ -1.32
VPS53-212ENST00000572259 TOPORSQ9NS56 1045 aaPredicted RBP6.8□□□□□ -1.32
VPS53-212ENST00000572259 RIC8BQ9NVN3 520 aa6.8□□□□□ -1.32
VPS53-212ENST00000572259 THG1LQ9NWX6 298 aaKnown RBP6.8□□□□□ -1.32
VPS53-212ENST00000572259 SLC4A4Q9Y6R1 1079 aa6.8□□□□□ -1.32
VPS53-212ENST00000572259 DOCK1Q14185 1865 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 ATAD5Q96QE3 1844 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 KLHL33A6NCF5 533 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.79□□□□□ -1.32
VPS53-212ENST00000572259 C19orf81C9J6K1 198 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 HIP1O00291 1037 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 CLGNO14967 610 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 PCDHGA12O60330 932 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 CLASP2O75122 1294 aaKnown RBP6.79□□□□□ -1.32
VPS53-212ENST00000572259 GFPT2O94808 682 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 IGHDP01880 384 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 SLC3A2P08195 630 aaKnown RBP6.79□□□□□ -1.32
VPS53-212ENST00000572259 GLULP15104 373 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 HOXC13P31276 330 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 GJA4P35212 333 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 CTNNA1P35221 906 aaKnown RBP6.79□□□□□ -1.32
VPS53-212ENST00000572259 PPM1AP35813 382 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 EPHA5P54756 1037 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 ZNF200P98182 395 aaPredicted RBP6.79□□□□□ -1.32
VPS53-212ENST00000572259 SPP2Q13103 211 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 CPZQ66K79 652 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 SPOCD1Q6ZMY3 1216 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 GADL1Q6ZQY3 521 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 KRT78Q8N1N4 520 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 ARRDC4Q8NCT1 418 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 SDR42E1Q8WUS8 393 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 CHTF18Q8WVB6 975 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 CLEC4DQ8WXI8 215 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 BRI3BPQ8WY22 251 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 CCDC47Q96A33 483 aaKnown RBP6.79□□□□□ -1.32
VPS53-212ENST00000572259 ERO1AQ96HE7 468 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 TMEM60Q9H2L4 133 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 C14orf119Q9NWQ9 140 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 TMOD4Q9NZQ9 345 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 SYNPO2Q9UMS6 1093 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 PCDHGA9Q9Y5G4 932 aaKnown RBP6.79□□□□□ -1.32
VPS53-212ENST00000572259 PCDHGA8Q9Y5G5 932 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 PCDHGA7Q9Y5G6 932 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 PCDHGA6Q9Y5G7 932 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 PCDHGA3Q9Y5H0 932 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 PCDHGA2Q9Y5H1 932 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 MAGED1Q9Y5V3 778 aaPredicted RBP6.79□□□□□ -1.32
VPS53-212ENST00000572259 LAMB1P07942 1786 aa6.79□□□□□ -1.32
VPS53-212ENST00000572259 A0A0G2JLL6 359 aaPredicted RBP6.78□□□□□ -1.32
VPS53-212ENST00000572259 GTPBP10A4D1E9 387 aaKnown RBP6.78□□□□□ -1.32
VPS53-212ENST00000572259 BTBD19C9JJ37 291 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 PDHXO00330 501 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 MPHOSPH10O00566 681 aaKnown RBP6.78□□□□□ -1.32
VPS53-212ENST00000572259 GPAA1O43292 621 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 ATP2A2P16615 1042 aaKnown RBP6.78□□□□□ -1.32
VPS53-212ENST00000572259 PTPN1P18031 435 aaKnown RBP6.78□□□□□ -1.32
VPS53-212ENST00000572259 HOXD10P28358 340 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 SMARCA1P28370 1054 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 ELF1P32519 619 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 KRT9P35527 623 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 KRT20P35900 424 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 TDO2P48775 406 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 CLNS1AP54105 237 aaKnown RBP6.78□□□□□ -1.32
VPS53-212ENST00000572259 SP3Q02447 781 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 ICA1Q05084 483 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 ZNF267Q14586 743 aaPredicted RBP6.78□□□□□ -1.32
VPS53-212ENST00000572259 TMEM132BQ14DG7 1078 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 KIAA0753Q2KHM9 967 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 CCDC38Q502W7 563 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 ATAT1Q5SQI0 421 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 LCE1DQ5T752 114 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 ITPRIPL1Q6GPH6 555 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 TATDN1Q6P1N9 297 aa6.78□□□□□ -1.32
VPS53-212ENST00000572259 DARS2Q6PI48 645 aaKnown RBP6.78□□□□□ -1.32
VPS53-212ENST00000572259 ETV3LQ6ZN32 361 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms