RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 AFF4Q9UHB7 1163 aaKnown RBP21.97■■□□□ 1.11
VPS53-210ENST00000571456 CDH22Q9UJ99 828 aa21.97■■□□□ 1.11
VPS53-210ENST00000571456 HCFC2Q9Y5Z7 792 aa21.97■■□□□ 1.11
VPS53-210ENST00000571456 BAHCC1Q9P281 2608 aa21.97■■□□□ 1.11
VPS53-210ENST00000571456 CHD8Q9HCK8 2581 aa21.96■■□□□ 1.11
VPS53-210ENST00000571456 CPB1P15086 417 aa21.96■■□□□ 1.11
VPS53-210ENST00000571456 ATF2P15336 505 aa21.96■■□□□ 1.11
VPS53-210ENST00000571456 AOC1P19801 751 aa21.96■■□□□ 1.11
VPS53-210ENST00000571456 INCA1Q0VD86 236 aa21.96■■□□□ 1.11
VPS53-210ENST00000571456 FILIP1LQ4L180 1135 aa21.96■■□□□ 1.11
VPS53-210ENST00000571456 SCARA3Q6AZY7 606 aa21.96■■□□□ 1.11
VPS53-210ENST00000571456 CES5AQ6NT32 575 aa21.96■■□□□ 1.11
VPS53-210ENST00000571456 CYP26C1Q6V0L0 522 aa21.96■■□□□ 1.11
VPS53-210ENST00000571456 CCDC149Q6ZUS6 474 aa21.96■■□□□ 1.11
VPS53-210ENST00000571456 LMO3Q8TAP4 145 aa21.96■■□□□ 1.11
VPS53-210ENST00000571456 PI4K2AQ9BTU6 479 aa21.96■■□□□ 1.11
VPS53-210ENST00000571456 ZCWPW1Q9H0M4 648 aa21.96■■□□□ 1.11
VPS53-210ENST00000571456 HSD3B7Q9H2F3 369 aa21.96■■□□□ 1.11
VPS53-210ENST00000571456 FBXW11Q9UKB1 542 aa21.96■■□□□ 1.11
VPS53-210ENST00000571456 ZFHX4Q86UP3 3567 aa21.96■■□□□ 1.11
VPS53-210ENST00000571456 TGM5O43548 720 aa21.95■■□□□ 1.1
VPS53-210ENST00000571456 PI15O43692 258 aa21.95■■□□□ 1.1
VPS53-210ENST00000571456 RPL17P18621 184 aaKnown RBP21.95■■□□□ 1.1
VPS53-210ENST00000571456 RFX1P22670 979 aa21.95■■□□□ 1.1
VPS53-210ENST00000571456 HSP90AA4PQ58FG1 418 aa21.95■■□□□ 1.1
VPS53-210ENST00000571456 INTS6LQ5JSJ4 861 aaKnown RBP21.95■■□□□ 1.1
VPS53-210ENST00000571456 LIN9Q5TKA1 542 aa21.95■■□□□ 1.1
VPS53-210ENST00000571456 DTWD2Q8NBA8 298 aa21.95■■□□□ 1.1
VPS53-210ENST00000571456 OR6B3Q8NGW1 331 aa21.95■■□□□ 1.1
VPS53-210ENST00000571456 RHOBTB2Q9BYZ6 727 aa21.95■■□□□ 1.1
VPS53-210ENST00000571456 ADAM7Q9H2U9 754 aa21.95■■□□□ 1.1
VPS53-210ENST00000571456 APOBEC3GQ9HC16 384 aaKnown RBP21.95■■□□□ 1.1
VPS53-210ENST00000571456 DLL3Q9NYJ7 618 aa21.95■■□□□ 1.1
VPS53-210ENST00000571456 PES1O00541 588 aaKnown RBP21.94■■□□□ 1.1
VPS53-210ENST00000571456 HOXA9P31269 272 aa21.94■■□□□ 1.1
VPS53-210ENST00000571456 ELF1P32519 619 aa21.94■■□□□ 1.1
VPS53-210ENST00000571456 COPB1P53618 953 aaKnown RBP21.94■■□□□ 1.1
VPS53-210ENST00000571456 ITIH3Q06033 890 aa21.94■■□□□ 1.1
VPS53-210ENST00000571456 CUL2Q13617 745 aa21.94■■□□□ 1.1
VPS53-210ENST00000571456 SPOPLQ6IQ16 392 aa21.94■■□□□ 1.1
VPS53-210ENST00000571456 TRIM65Q6PJ69 517 aa21.94■■□□□ 1.1
VPS53-210ENST00000571456 RSPO2Q6UXX9 243 aaPredicted RBP21.94■■□□□ 1.1
VPS53-210ENST00000571456 TCEAL8Q8IYN2 117 aa21.94■■□□□ 1.1
VPS53-210ENST00000571456 ZDHHC14Q8IZN3 488 aa21.94■■□□□ 1.1
VPS53-210ENST00000571456 CMASQ8NFW8 434 aaPredicted RBP21.94■■□□□ 1.1
VPS53-210ENST00000571456 SPPL2BQ8TCT7 592 aa21.94■■□□□ 1.1
VPS53-210ENST00000571456 FUBP3Q96I24 572 aaKnown RBP eCLIP21.94■■□□□ 1.1
VPS53-210ENST00000571456 RTP3Q9BQQ7 232 aa21.94■■□□□ 1.1
VPS53-210ENST00000571456 MRPL45Q9BRJ2 306 aaKnown RBP21.94■■□□□ 1.1
VPS53-210ENST00000571456 INTS2Q9H0H0 1204 aaKnown RBP21.94■■□□□ 1.1
VPS53-210ENST00000571456 SMYD3Q9H7B4 428 aa21.94■■□□□ 1.1
VPS53-210ENST00000571456 ABCB6Q9NP58 842 aa21.94■■□□□ 1.1
VPS53-210ENST00000571456 ZDHHC7Q9NXF8 308 aa21.94■■□□□ 1.1
VPS53-210ENST00000571456 TAB2Q9NYJ8 693 aa21.94■■□□□ 1.1
VPS53-210ENST00000571456 LIMD1Q9UGP4 676 aa21.94■■□□□ 1.1
VPS53-210ENST00000571456 POLIQ9UNA4 740 aa21.94■■□□□ 1.1
VPS53-210ENST00000571456 WDR27A2RRH5 827 aa21.93■■□□□ 1.1
VPS53-210ENST00000571456 LGALS16A8MUM7 142 aa21.93■■□□□ 1.1
VPS53-210ENST00000571456 A8MXQ7 604 aa21.93■■□□□ 1.1
VPS53-210ENST00000571456 PAPLNO95428 1278 aa21.93■■□□□ 1.1
VPS53-210ENST00000571456 POU2F2P09086 479 aa21.93■■□□□ 1.1
VPS53-210ENST00000571456 C4orf50Q6ZRC1 276 aa21.93■■□□□ 1.1
VPS53-210ENST00000571456 LUZP1Q86V48 1076 aa21.93■■□□□ 1.1
VPS53-210ENST00000571456 PALB2Q86YC2 1186 aa21.93■■□□□ 1.1
VPS53-210ENST00000571456 TDRD5Q8NAT2 981 aaKnown RBP21.93■■□□□ 1.1
VPS53-210ENST00000571456 OR10T2Q8NGX3 314 aa21.93■■□□□ 1.1
VPS53-210ENST00000571456 SYT15Q9BQS2 421 aa21.93■■□□□ 1.1
VPS53-210ENST00000571456 SFXN1Q9H9B4 322 aa21.93■■□□□ 1.1
VPS53-210ENST00000571456 APEX2Q9UBZ4 518 aa21.93■■□□□ 1.1
VPS53-210ENST00000571456 FANCMQ8IYD8 2048 aa21.92■■□□□ 1.1
VPS53-210ENST00000571456 HNRNPA1P09651 372 aaKnown RBP eCLIP21.92■■□□□ 1.1
VPS53-210ENST00000571456 NPR3P17342 541 aa21.92■■□□□ 1.1
VPS53-210ENST00000571456 MTHFRP42898 656 aa21.92■■□□□ 1.1
VPS53-210ENST00000571456 PLD1Q13393 1074 aa21.92■■□□□ 1.1
VPS53-210ENST00000571456 FAM171BQ6P995 826 aa21.92■■□□□ 1.1
VPS53-210ENST00000571456 SCARA5Q6ZMJ2 495 aa21.92■■□□□ 1.1
VPS53-210ENST00000571456 OSTM1Q86WC4 334 aa21.92■■□□□ 1.1
VPS53-210ENST00000571456 CRYBG2Q8N1P7 616 aa21.92■■□□□ 1.1
VPS53-210ENST00000571456 PPM1KQ8N3J5 372 aa21.92■■□□□ 1.1
VPS53-210ENST00000571456 NT5C1AQ9BXI3 368 aa21.92■■□□□ 1.1
VPS53-210ENST00000571456 VPS16Q9H269 839 aa21.92■■□□□ 1.1
VPS53-210ENST00000571456 ADAM12O43184 909 aa21.91■■□□□ 1.1
VPS53-210ENST00000571456 CILPO75339 1184 aa21.91■■□□□ 1.1
VPS53-210ENST00000571456 EPCAMP16422 314 aa21.91■■□□□ 1.1
VPS53-210ENST00000571456 PON1P27169 355 aa21.91■■□□□ 1.1
VPS53-210ENST00000571456 TUFMP49411 452 aaKnown RBP21.91■■□□□ 1.1
VPS53-210ENST00000571456 MFAP3P55082 362 aa21.91■■□□□ 1.1
VPS53-210ENST00000571456 ARPP19P56211 112 aa21.91■■□□□ 1.1
VPS53-210ENST00000571456 CFAP221Q4G0U5 840 aa21.91■■□□□ 1.1
VPS53-210ENST00000571456 GLYCTKQ8IVS8 523 aa21.91■■□□□ 1.1
VPS53-210ENST00000571456 PLCD3Q8N3E9 789 aa21.91■■□□□ 1.1
VPS53-210ENST00000571456 MYCBPAPQ8TBZ2 947 aa21.91■■□□□ 1.1
VPS53-210ENST00000571456 TATDN2Q93075 761 aa21.91■■□□□ 1.1
VPS53-210ENST00000571456 CEP295NLQ96MC4 621 aa21.91■■□□□ 1.1
VPS53-210ENST00000571456 HINFPQ9BQA5 517 aa21.91■■□□□ 1.1
VPS53-210ENST00000571456 PLCB1Q9NQ66 1216 aa21.91■■□□□ 1.1
VPS53-210ENST00000571456 MAN1C1Q9NR34 630 aa21.91■■□□□ 1.1
VPS53-210ENST00000571456 CISHQ9NSE2 258 aa21.91■■□□□ 1.1
VPS53-210ENST00000571456 PCDHB5Q9Y5E4 795 aa21.91■■□□□ 1.1
VPS53-210ENST00000571456 GPR179Q6PRD1 2367 aa21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms