RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 SFNP31947 248 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 MYL6P60660 151 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 PRAMEF18Q5VWM3 479 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 ALLCQ8N6M5 410 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 SMC1BQ8NDV3 1235 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 SPATA18Q8TC71 538 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 C10orf82Q8WW14 230 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 G3BP2Q9UN86 482 aaKnown RBP15.19■□□□□ 0.02
VPS35-210ENST00000568784 FZD1Q9UP38 647 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 DGAT1O75907 488 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 ZWINTO95229 277 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 CALB1P05937 261 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 MAPTP10636 758 aaKnown RBP15.19■□□□□ 0.02
VPS35-210ENST00000568784 RAP1GAPP47736 663 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 PTPRJQ12913 1337 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 KLHL38Q2WGJ6 581 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 MSS51Q4VC12 460 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 C1orf146Q5VVC0 180 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 ALYREFQ86V81 257 aaKnown RBP15.19■□□□□ 0.02
VPS35-210ENST00000568784 RAB6BQ9NRW1 208 aa15.19■□□□□ 0.02
VPS35-210ENST00000568784 SEC23IPQ9Y6Y8 1000 aaKnown RBP15.19■□□□□ 0.02
VPS35-210ENST00000568784 OPHN1O60890 802 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 HSPA1LP34931 641 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 VHLP40337 213 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 KBTBD12Q3ZCT8 623 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 PPP6R3Q5H9R7 873 aaPredicted RBP15.18■□□□□ 0.02
VPS35-210ENST00000568784 ANO7Q6IWH7 933 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 TRIM72Q6ZMU5 477 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 ZCCHC23Q6ZST2 131 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 CCDC60Q8IWA6 550 aaPredicted RBP15.18■□□□□ 0.02
VPS35-210ENST00000568784 PPIL6Q8IXY8 311 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 FAM151AQ8WW52 585 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 SLC7A6OSQ96CW6 309 aaPredicted RBP15.18■□□□□ 0.02
VPS35-210ENST00000568784 CLPTM1LQ96KA5 538 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 MFSD14AQ96MC6 490 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 CADM1Q9BY67 442 aaKnown RBP15.18■□□□□ 0.02
VPS35-210ENST00000568784 ANKEF1Q9NU02 776 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 TJP2Q9UDY2 1190 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 ACTL7BQ9Y614 415 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 LAMB2P55268 1798 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 TCRBV7S3A2A0A539 114 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 SPDYE2BA6NHP3 402 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 APBA3O96018 575 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 SPDYE6P0CI01 402 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 FGFR1P11362 822 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 RFC1P35251 1148 aaPredicted RBP15.18■□□□□ 0.02
VPS35-210ENST00000568784 KRT81Q14533 505 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 EMC2Q15006 297 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 RBBP5Q15291 538 aaKnown RBP15.18■□□□□ 0.02
VPS35-210ENST00000568784 SCARA3Q6AZY7 606 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 NPNTQ6UXI9 565 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 ARHGAP24Q8N264 748 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 PTPRN2Q92932 1015 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 SLCO2A1Q92959 643 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 RPAP3Q9H6T3 665 aaPredicted RBP15.18■□□□□ 0.02
VPS35-210ENST00000568784 JPH1Q9HDC5 661 aaPredicted RBP15.18■□□□□ 0.02
VPS35-210ENST00000568784 NGRNQ9NPE2 291 aaKnown RBP15.18■□□□□ 0.02
VPS35-210ENST00000568784 CYP26B1Q9NR63 512 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 XIRP1Q702N8 1843 aaKnown RBP15.18■□□□□ 0.02
VPS35-210ENST00000568784 FCHO1O14526 889 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 APRTP07741 180 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 CD48P09326 243 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 KLRC2P26717 231 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 SERPINB4P48594 390 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 CDH6P55285 790 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 ZACNQ401N2 412 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 PLEKHG4Q58EX7 1191 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 ZNF677Q86XU0 584 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 PCMTD2Q9NV79 361 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 CORO1CQ9ULV4 474 aaPredicted RBP15.18■□□□□ 0.02
VPS35-210ENST00000568784 COQ4Q9Y3A0 265 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 UBIAD1Q9Y5Z9 338 aa15.18■□□□□ 0.02
VPS35-210ENST00000568784 KBTBD13C9JR72 458 aa15.17■□□□□ 0.02
VPS35-210ENST00000568784 ALADP13716 330 aa15.17■□□□□ 0.02
VPS35-210ENST00000568784 CCND2P30279 289 aa15.17■□□□□ 0.02
VPS35-210ENST00000568784 SKIV2L2P42285 1042 aaKnown RBP15.17■□□□□ 0.02
VPS35-210ENST00000568784 TUBP50607 506 aa15.17■□□□□ 0.02
VPS35-210ENST00000568784 MRPS35P82673 323 aaKnown RBP15.17■□□□□ 0.02
VPS35-210ENST00000568784 KLF1Q13351 362 aaPredicted RBP15.17■□□□□ 0.02
VPS35-210ENST00000568784 UNC45BQ8IWX7 931 aa15.17■□□□□ 0.02
VPS35-210ENST00000568784 ZNF395Q9H8N7 513 aaPredicted RBP15.17■□□□□ 0.02
VPS35-210ENST00000568784 MEI4A8MW99 385 aa15.17■□□□□ 0.02
VPS35-210ENST00000568784 CST3P01034 146 aaPredicted RBP15.17■□□□□ 0.02
VPS35-210ENST00000568784 T-ENOLP0DO92 83 aa15.17■□□□□ 0.02
VPS35-210ENST00000568784 RPL22P35268 128 aaKnown RBP15.17■□□□□ 0.02
VPS35-210ENST00000568784 ZNF200P98182 395 aaPredicted RBP15.17■□□□□ 0.02
VPS35-210ENST00000568784 PARP6Q2NL67 630 aa15.17■□□□□ 0.02
VPS35-210ENST00000568784 MROH9Q5TGP6 573 aa15.17■□□□□ 0.02
VPS35-210ENST00000568784 INPP5DQ92835 1189 aa15.17■□□□□ 0.02
VPS35-210ENST00000568784 INO80B-WBP1J3KQ70 363 aa15.17■□□□□ 0.02
VPS35-210ENST00000568784 TNFSF9P41273 254 aa15.17■□□□□ 0.02
VPS35-210ENST00000568784 ACVR2BQ13705 512 aa15.17■□□□□ 0.02
VPS35-210ENST00000568784 RASA2Q15283 850 aa15.17■□□□□ 0.02
VPS35-210ENST00000568784 ZNF699Q32M78 642 aa15.17■□□□□ 0.02
VPS35-210ENST00000568784 SLC45A4Q5BKX6 768 aa15.17■□□□□ 0.02
VPS35-210ENST00000568784 AGR3Q8TD06 166 aa15.17■□□□□ 0.02
VPS35-210ENST00000568784 BTBD10Q9BSF8 475 aa15.17■□□□□ 0.02
VPS35-210ENST00000568784 INO80BQ9C086 356 aaPredicted RBP15.17■□□□□ 0.02
VPS35-210ENST00000568784 PAPOLBQ9NRJ5 636 aaKnown RBP15.17■□□□□ 0.02
VPS35-210ENST00000568784 GPATCH2LQ9NWQ4 482 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms