RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 ZNF268Q14587 947 aaPredicted RBP16.03■□□□□ 0.16
CLN3-236ENST00000568558 SLC39A14Q15043 492 aa16.03■□□□□ 0.16
CLN3-236ENST00000568558 DDR2Q16832 855 aa16.03■□□□□ 0.16
CLN3-236ENST00000568558 CCDC142Q17RM4 750 aa16.03■□□□□ 0.16
CLN3-236ENST00000568558 TMEM196Q5HYL7 178 aa16.03■□□□□ 0.16
CLN3-236ENST00000568558 FSTL4Q6MZW2 842 aa16.03■□□□□ 0.16
CLN3-236ENST00000568558 PKN3Q6P5Z2 889 aa16.03■□□□□ 0.16
CLN3-236ENST00000568558 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.03■□□□□ 0.16
CLN3-236ENST00000568558 WDR5BQ86VZ2 330 aa16.03■□□□□ 0.16
CLN3-236ENST00000568558 GPD1LQ8N335 351 aa16.03■□□□□ 0.16
CLN3-236ENST00000568558 TOP6BLQ8N6T0 577 aa16.03■□□□□ 0.16
CLN3-236ENST00000568558 TRMT2BQ96GJ1 504 aaKnown RBP16.03■□□□□ 0.16
CLN3-236ENST00000568558 PANK2Q9BZ23 570 aa16.03■□□□□ 0.16
CLN3-236ENST00000568558 MTMR12Q9C0I1 747 aa16.03■□□□□ 0.16
CLN3-236ENST00000568558 TMEM206Q9H813 350 aa16.03■□□□□ 0.16
CLN3-236ENST00000568558 PDE11AQ9HCR9 933 aa16.03■□□□□ 0.16
CLN3-236ENST00000568558 SEMA4GQ9NTN9 838 aa16.03■□□□□ 0.16
CLN3-236ENST00000568558 UXTQ9UBK9 157 aaPredicted RBP16.03■□□□□ 0.16
CLN3-236ENST00000568558 SIX4Q9UIU6 781 aa16.03■□□□□ 0.16
CLN3-236ENST00000568558 GTF3C4Q9UKN8 822 aa16.03■□□□□ 0.16
CLN3-236ENST00000568558 MTMR6Q9Y217 621 aa16.03■□□□□ 0.16
CLN3-236ENST00000568558 SNX9Q9Y5X1 595 aa16.03■□□□□ 0.16
CLN3-236ENST00000568558 TRDMT1O14717 391 aaKnown RBP16.02■□□□□ 0.16
CLN3-236ENST00000568558 GABRDO14764 452 aa16.02■□□□□ 0.16
CLN3-236ENST00000568558 HCRTO43612 131 aa16.02■□□□□ 0.16
CLN3-236ENST00000568558 TMEM191BP0C7N4 346 aa16.02■□□□□ 0.16
CLN3-236ENST00000568558 ARSAP15289 507 aa16.02■□□□□ 0.16
CLN3-236ENST00000568558 LHX1P48742 406 aa16.02■□□□□ 0.16
CLN3-236ENST00000568558 RBP5P82980 135 aa16.02■□□□□ 0.16
CLN3-236ENST00000568558 CSRP2Q16527 193 aa16.02■□□□□ 0.16
CLN3-236ENST00000568558 CFAP221Q4G0U5 840 aa16.02■□□□□ 0.16
CLN3-236ENST00000568558 ADGRF2Q8IZF7 708 aa16.02■□□□□ 0.16
CLN3-236ENST00000568558 NOC3LQ8WTT2 800 aaKnown RBP16.02■□□□□ 0.16
CLN3-236ENST00000568558 MYRFLQ96LU7 910 aa16.02■□□□□ 0.16
CLN3-236ENST00000568558 PTPRJQ12913 1337 aa16.01■□□□□ 0.15
CLN3-236ENST00000568558 SDK1Q7Z5N4 2213 aa16.01■□□□□ 0.15
CLN3-236ENST00000568558 DCDC2BA2VCK2 349 aa16.01■□□□□ 0.15
CLN3-236ENST00000568558 KIAA0391O15091 583 aaKnown RBP16.01■□□□□ 0.15
CLN3-236ENST00000568558 PCSK1P29120 753 aa16.01■□□□□ 0.15
CLN3-236ENST00000568558 GRSF1Q12849 480 aaKnown RBP eCLIP16.01■□□□□ 0.15
CLN3-236ENST00000568558 MTF1Q14872 753 aa16.01■□□□□ 0.15
CLN3-236ENST00000568558 SOWAHAQ2M3V2 549 aa16.01■□□□□ 0.15
CLN3-236ENST00000568558 LMBRD2Q68DH5 695 aaPredicted RBP16.01■□□□□ 0.15
CLN3-236ENST00000568558 CC2D1AQ6P1N0 951 aaPredicted RBP16.01■□□□□ 0.15
CLN3-236ENST00000568558 PRR23CQ6ZRP0 262 aa16.01■□□□□ 0.15
CLN3-236ENST00000568558 CEP68Q76N32 757 aa16.01■□□□□ 0.15
CLN3-236ENST00000568558 SPATA2LQ8IUW3 424 aaPredicted RBP16.01■□□□□ 0.15
CLN3-236ENST00000568558 CCDC65Q8IXS2 484 aa16.01■□□□□ 0.15
CLN3-236ENST00000568558 FAM160A2Q8N612 972 aaPredicted RBP16.01■□□□□ 0.15
CLN3-236ENST00000568558 PDILTQ8N807 584 aa16.01■□□□□ 0.15
CLN3-236ENST00000568558 NETO1Q8TDF5 533 aa16.01■□□□□ 0.15
CLN3-236ENST00000568558 FUBP3Q96I24 572 aaKnown RBP eCLIP16.01■□□□□ 0.15
CLN3-236ENST00000568558 ANKRD36BP1Q96IX9 119 aa16.01■□□□□ 0.15
CLN3-236ENST00000568558 INTS13Q9NVM9 706 aa16.01■□□□□ 0.15
CLN3-236ENST00000568558 CCDC163A0A0D9SF12 145 aa16■□□□□ 0.15
CLN3-236ENST00000568558 SLC30A4O14863 429 aa16■□□□□ 0.15
CLN3-236ENST00000568558 EGFP01133 1207 aa16■□□□□ 0.15
CLN3-236ENST00000568558 NASPP49321 788 aaPredicted RBP16■□□□□ 0.15
CLN3-236ENST00000568558 AMPD2Q01433 879 aa16■□□□□ 0.15
CLN3-236ENST00000568558 FAM160A1Q05DH4 1040 aa16■□□□□ 0.15
CLN3-236ENST00000568558 USP4Q13107 963 aa16■□□□□ 0.15
CLN3-236ENST00000568558 PDGFRLQ15198 375 aa16■□□□□ 0.15
CLN3-236ENST00000568558 ZNF77Q15935 545 aa16■□□□□ 0.15
CLN3-236ENST00000568558 FAM171BQ6P995 826 aa16■□□□□ 0.15
CLN3-236ENST00000568558 DPH6Q7L8W6 267 aa16■□□□□ 0.15
CLN3-236ENST00000568558 LIMS2Q7Z4I7 341 aa16■□□□□ 0.15
CLN3-236ENST00000568558 GLIS3Q8NEA6 775 aa16■□□□□ 0.15
CLN3-236ENST00000568558 OR5B17Q8NGF7 314 aa16■□□□□ 0.15
CLN3-236ENST00000568558 KBTBD7Q8WVZ9 684 aa16■□□□□ 0.15
CLN3-236ENST00000568558 INTS4Q96HW7 963 aaKnown RBP16■□□□□ 0.15
CLN3-236ENST00000568558 SLC22A12Q96S37 553 aa16■□□□□ 0.15
CLN3-236ENST00000568558 TNMDQ9H2S6 317 aa16■□□□□ 0.15
CLN3-236ENST00000568558 ZSCAN16Q9H4T2 348 aaPredicted RBP16■□□□□ 0.15
CLN3-236ENST00000568558 TRPC7Q9HCX4 862 aa16■□□□□ 0.15
CLN3-236ENST00000568558 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.99■□□□□ 0.15
CLN3-236ENST00000568558 ZNF233A6NK53 670 aa15.99■□□□□ 0.15
CLN3-236ENST00000568558 ATG13O75143 517 aa15.99■□□□□ 0.15
CLN3-236ENST00000568558 RNF40O75150 1001 aa15.99■□□□□ 0.15
CLN3-236ENST00000568558 TNNC2P02585 160 aa15.99■□□□□ 0.15
CLN3-236ENST00000568558 CKMP06732 381 aa15.99■□□□□ 0.15
CLN3-236ENST00000568558 USP17L7P0C7H9 530 aa15.99■□□□□ 0.15
CLN3-236ENST00000568558 DRD1P21728 446 aa15.99■□□□□ 0.15
CLN3-236ENST00000568558 GJA4P35212 333 aa15.99■□□□□ 0.15
CLN3-236ENST00000568558 MAGEA11P43364 429 aa15.99■□□□□ 0.15
CLN3-236ENST00000568558 PXNP49023 591 aaPredicted RBP15.99■□□□□ 0.15
CLN3-236ENST00000568558 MYO1EQ12965 1108 aa15.99■□□□□ 0.15
CLN3-236ENST00000568558 SURF1Q15526 300 aa15.99■□□□□ 0.15
CLN3-236ENST00000568558 C4orf50Q6ZRC1 276 aa15.99■□□□□ 0.15
CLN3-236ENST00000568558 STXBP4Q6ZWJ1 553 aa15.99■□□□□ 0.15
CLN3-236ENST00000568558 CBWD2Q8IUF1 395 aa15.99■□□□□ 0.15
CLN3-236ENST00000568558 SCN4BQ8IWT1 228 aa15.99■□□□□ 0.15
CLN3-236ENST00000568558 CPA6Q8N4T0 437 aa15.99■□□□□ 0.15
CLN3-236ENST00000568558 GAB3Q8WWW8 586 aa15.99■□□□□ 0.15
CLN3-236ENST00000568558 HPS3Q969F9 1004 aa15.99■□□□□ 0.15
CLN3-236ENST00000568558 HPDLQ96IR7 371 aa15.99■□□□□ 0.15
CLN3-236ENST00000568558 CYP2S1Q96SQ9 504 aa15.99■□□□□ 0.15
CLN3-236ENST00000568558 SYT15Q9BQS2 421 aa15.99■□□□□ 0.15
CLN3-236ENST00000568558 ECT2Q9H8V3 914 aa15.99■□□□□ 0.15
CLN3-236ENST00000568558 FBRSL1Q9HCM7 1045 aaKnown RBP15.99■□□□□ 0.15
CLN3-236ENST00000568558 GCNT4Q9P109 453 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms