RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 ADAMTS9Q9P2N4 1935 aa12.75□□□□□ -0.37
CLK3-222ENST00000568232 ZMYM5Q9UJ78 669 aa12.75□□□□□ -0.37
CLK3-222ENST00000568232 MAGED2Q9UNF1 606 aaPredicted RBP12.75□□□□□ -0.37
CLK3-222ENST00000568232 PCDHB9Q9Y5E1 797 aa12.75□□□□□ -0.37
CLK3-222ENST00000568232 MYO16Q9Y6X6 1858 aa12.75□□□□□ -0.37
CLK3-222ENST00000568232 TNRC6BQ9UPQ9 1833 aaKnown RBP12.74□□□□□ -0.37
CLK3-222ENST00000568232 CFAP46Q8IYW2 2715 aa12.74□□□□□ -0.37
CLK3-222ENST00000568232 SGK1O00141 431 aa12.74□□□□□ -0.37
CLK3-222ENST00000568232 ARHGAP33O14559 1287 aa12.74□□□□□ -0.37
CLK3-222ENST00000568232 ALDH1A2O94788 518 aa12.74□□□□□ -0.37
CLK3-222ENST00000568232 HAPLN1P10915 354 aaPredicted RBP12.74□□□□□ -0.37
CLK3-222ENST00000568232 DDX6P26196 483 aaKnown RBP eCLIP12.74□□□□□ -0.37
CLK3-222ENST00000568232 RPA1P27694 616 aa12.74□□□□□ -0.37
CLK3-222ENST00000568232 KRT2P35908 639 aa12.74□□□□□ -0.37
CLK3-222ENST00000568232 GPR15P49685 360 aa12.74□□□□□ -0.37
CLK3-222ENST00000568232 MESP2Q0VG99 397 aa12.74□□□□□ -0.37
CLK3-222ENST00000568232 SCRN1Q12765 414 aa12.74□□□□□ -0.37
CLK3-222ENST00000568232 HNRNPDQ14103 355 aaKnown RBP12.74□□□□□ -0.37
CLK3-222ENST00000568232 ZNF268Q14587 947 aaPredicted RBP12.74□□□□□ -0.37
CLK3-222ENST00000568232 NBR1Q14596 966 aa12.74□□□□□ -0.37
CLK3-222ENST00000568232 ZNF77Q15935 545 aa12.74□□□□□ -0.37
CLK3-222ENST00000568232 BMP2KLQ5H9B9 411 aa12.74□□□□□ -0.37
CLK3-222ENST00000568232 EMC10Q5UCC4 262 aa12.74□□□□□ -0.37
CLK3-222ENST00000568232 SDHAF4Q5VUM1 108 aa12.74□□□□□ -0.37
CLK3-222ENST00000568232 EFCAB13Q8IY85 973 aa12.74□□□□□ -0.37
CLK3-222ENST00000568232 DAW1Q8N136 415 aa12.74□□□□□ -0.37
CLK3-222ENST00000568232 TXNDC5Q8NBS9 432 aaKnown RBP12.74□□□□□ -0.37
CLK3-222ENST00000568232 WHAMMQ8TF30 809 aa12.74□□□□□ -0.37
CLK3-222ENST00000568232 HMGB4Q8WW32 186 aa12.74□□□□□ -0.37
CLK3-222ENST00000568232 ATP2A3Q93084 1043 aa12.74□□□□□ -0.37
CLK3-222ENST00000568232 HAPLN2Q9GZV7 340 aa12.74□□□□□ -0.37
CLK3-222ENST00000568232 DNAAF2Q9NVR5 837 aaKnown RBP12.74□□□□□ -0.37
CLK3-222ENST00000568232 BCCIPQ9P287 314 aaKnown RBP eCLIP12.74□□□□□ -0.37
CLK3-222ENST00000568232 ARHGAP28Q9P2N2 729 aa12.74□□□□□ -0.37
CLK3-222ENST00000568232 PLXNB3Q9ULL4 1909 aa12.74□□□□□ -0.37
CLK3-222ENST00000568232 TTC26A0AVF1 554 aa12.73□□□□□ -0.37
CLK3-222ENST00000568232 SLC16A4O15374 487 aa12.73□□□□□ -0.37
CLK3-222ENST00000568232 KLF8O95600 359 aaPredicted RBP12.73□□□□□ -0.37
CLK3-222ENST00000568232 ODC1P11926 461 aa12.73□□□□□ -0.37
CLK3-222ENST00000568232 PLA2G2AP14555 144 aa12.73□□□□□ -0.37
CLK3-222ENST00000568232 TNFSF9P41273 254 aa12.73□□□□□ -0.37
CLK3-222ENST00000568232 LILRA4P59901 499 aa12.73□□□□□ -0.37
CLK3-222ENST00000568232 FAM160A1Q05DH4 1040 aa12.73□□□□□ -0.37
CLK3-222ENST00000568232 CYP4F3Q08477 520 aa12.73□□□□□ -0.37
CLK3-222ENST00000568232 GAB4Q2WGN9 574 aa12.73□□□□□ -0.37
CLK3-222ENST00000568232 ZC2HC1CQ53FD0 456 aaPredicted RBP12.73□□□□□ -0.37
CLK3-222ENST00000568232 PGBD3Q8N328 593 aa12.73□□□□□ -0.37
CLK3-222ENST00000568232 IL17RCQ8NAC3 791 aa12.73□□□□□ -0.37
CLK3-222ENST00000568232 CCDC26Q8TAB7 109 aa12.73□□□□□ -0.37
CLK3-222ENST00000568232 CEP76Q8TAP6 659 aa12.73□□□□□ -0.37
CLK3-222ENST00000568232 MRPS31Q92665 395 aaKnown RBP12.73□□□□□ -0.37
CLK3-222ENST00000568232 TRPC7Q9HCX4 862 aa12.73□□□□□ -0.37
CLK3-222ENST00000568232 KMT5AQ9NQR1 393 aa12.73□□□□□ -0.37
CLK3-222ENST00000568232 ABI2Q9NYB9 513 aaPredicted RBP12.73□□□□□ -0.37
CLK3-222ENST00000568232 UBQLN1Q9UMX0 589 aaKnown RBP12.73□□□□□ -0.37
CLK3-222ENST00000568232 SFI1A8K8P3 1242 aa12.72□□□□□ -0.37
CLK3-222ENST00000568232 LACTBL1A8MY62 500 aa12.72□□□□□ -0.37
CLK3-222ENST00000568232 BTBD18B2RXH4 712 aa12.72□□□□□ -0.37
CLK3-222ENST00000568232 HIP1RO75146 1068 aa12.72□□□□□ -0.37
CLK3-222ENST00000568232 CDC45O75419 566 aa12.72□□□□□ -0.37
CLK3-222ENST00000568232 TADA3O75528 432 aa12.72□□□□□ -0.37
CLK3-222ENST00000568232 TOM1L1O75674 476 aa12.72□□□□□ -0.37
CLK3-222ENST00000568232 GJB3O75712 270 aa12.72□□□□□ -0.37
CLK3-222ENST00000568232 MCM7P33993 719 aa12.72□□□□□ -0.37
CLK3-222ENST00000568232 HOXD12P35452 270 aa12.72□□□□□ -0.37
CLK3-222ENST00000568232 DPP6P42658 865 aa12.72□□□□□ -0.37
CLK3-222ENST00000568232 EMP3P54852 163 aa12.72□□□□□ -0.37
CLK3-222ENST00000568232 RPL6Q02878 288 aaKnown RBP12.72□□□□□ -0.37
CLK3-222ENST00000568232 USP4Q13107 963 aa12.72□□□□□ -0.37
CLK3-222ENST00000568232 NR1H3Q13133 447 aa12.72□□□□□ -0.37
CLK3-222ENST00000568232 NOLC1Q14978 699 aaKnown RBP eCLIP12.72□□□□□ -0.37
CLK3-222ENST00000568232 SPDYCQ5MJ68 293 aa12.72□□□□□ -0.37
CLK3-222ENST00000568232 LARP1BQ659C4 914 aaKnown RBP12.72□□□□□ -0.37
CLK3-222ENST00000568232 LMBRD2Q68DH5 695 aaPredicted RBP12.72□□□□□ -0.37
CLK3-222ENST00000568232 TOGARAM2Q6ZUX3 1019 aa12.72□□□□□ -0.37
CLK3-222ENST00000568232 NAXDQ8IW45 347 aa12.72□□□□□ -0.37
CLK3-222ENST00000568232 LRRC15Q8TF66 581 aa12.72□□□□□ -0.37
CLK3-222ENST00000568232 UBL7Q96S82 380 aaPredicted RBP12.72□□□□□ -0.37
CLK3-222ENST00000568232 ZSWIM6Q9HCJ5 1215 aa12.72□□□□□ -0.37
CLK3-222ENST00000568232 POLMQ9NP87 494 aaPredicted RBP12.72□□□□□ -0.37
CLK3-222ENST00000568232 PTPRDP23468 1912 aa12.72□□□□□ -0.37
CLK3-222ENST00000568232 APC2O95996 2303 aa12.71□□□□□ -0.37
CLK3-222ENST00000568232 STK36Q9NRP7 1315 aa12.71□□□□□ -0.37
CLK3-222ENST00000568232 PCDH15Q96QU1 1955 aa12.71□□□□□ -0.37
CLK3-222ENST00000568232 TCRBV21S2A2A0A5A6 115 aa12.71□□□□□ -0.37
CLK3-222ENST00000568232 AP5Z1O43299 807 aa12.71□□□□□ -0.37
CLK3-222ENST00000568232 ADAM23O75077 832 aa12.71□□□□□ -0.37
CLK3-222ENST00000568232 CTDNEP1O95476 244 aa12.71□□□□□ -0.37
CLK3-222ENST00000568232 CYP3A5P20815 502 aa12.71□□□□□ -0.37
CLK3-222ENST00000568232 SLC6A11P48066 632 aa12.71□□□□□ -0.37
CLK3-222ENST00000568232 FOSBP53539 338 aa12.71□□□□□ -0.37
CLK3-222ENST00000568232 IRX6P78412 446 aaPredicted RBP12.71□□□□□ -0.37
CLK3-222ENST00000568232 MRPS21P82921 87 aaKnown RBP12.71□□□□□ -0.37
CLK3-222ENST00000568232 ZNF33AQ06730 810 aa12.71□□□□□ -0.37
CLK3-222ENST00000568232 ARL14EPQ8N8R7 260 aaPredicted RBP12.71□□□□□ -0.37
CLK3-222ENST00000568232 SPRYD3Q8NCJ5 442 aa12.71□□□□□ -0.37
CLK3-222ENST00000568232 SH3RF2Q8TEC5 729 aa12.71□□□□□ -0.37
CLK3-222ENST00000568232 PLEKHA5Q9HAU0 1116 aa12.71□□□□□ -0.37
CLK3-222ENST00000568232 TMLHEQ9NVH6 421 aa12.71□□□□□ -0.37
CLK3-222ENST00000568232 A0A087WV48 116 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms