RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 CCINQ13939 588 aa17.24■□□□□ 0.35
CLN3-229ENST00000567963 DUOXA2Q1HG44 320 aa17.24■□□□□ 0.35
CLN3-229ENST00000567963 ITPRIPL2Q3MIP1 535 aa17.24■□□□□ 0.35
CLN3-229ENST00000567963 CFAP221Q4G0U5 840 aa17.24■□□□□ 0.35
CLN3-229ENST00000567963 FAM171BQ6P995 826 aa17.24■□□□□ 0.35
CLN3-229ENST00000567963 LIMS2Q7Z4I7 341 aa17.24■□□□□ 0.35
CLN3-229ENST00000567963 GPR161Q8N6U8 529 aaKnown RBP17.24■□□□□ 0.35
CLN3-229ENST00000567963 SECISBP2LQ93073 1101 aaKnown RBP17.24■□□□□ 0.35
CLN3-229ENST00000567963 HPDLQ96IR7 371 aa17.24■□□□□ 0.35
CLN3-229ENST00000567963 MYRFLQ96LU7 910 aa17.24■□□□□ 0.35
CLN3-229ENST00000567963 C7orf25Q9BPX7 421 aa17.24■□□□□ 0.35
CLN3-229ENST00000567963 KIAA1586Q9HCI6 787 aa17.24■□□□□ 0.35
CLN3-229ENST00000567963 UXTQ9UBK9 157 aaPredicted RBP17.24■□□□□ 0.35
CLN3-229ENST00000567963 TGFB1I1O43294 461 aa17.24■□□□□ 0.35
CLN3-229ENST00000567963 PAPSS2O95340 614 aaPredicted RBP17.24■□□□□ 0.35
CLN3-229ENST00000567963 TNNC2P02585 160 aa17.24■□□□□ 0.35
CLN3-229ENST00000567963 PDIA4P13667 645 aaKnown RBP17.24■□□□□ 0.35
CLN3-229ENST00000567963 CCDC142Q17RM4 750 aa17.24■□□□□ 0.35
CLN3-229ENST00000567963 Q6ZS52 159 aa17.24■□□□□ 0.35
CLN3-229ENST00000567963 MON1AQ86VX9 555 aa17.24■□□□□ 0.35
CLN3-229ENST00000567963 SPATA2LQ8IUW3 424 aaPredicted RBP17.24■□□□□ 0.35
CLN3-229ENST00000567963 WDR49Q8IV35 697 aa17.24■□□□□ 0.35
CLN3-229ENST00000567963 SYNPOQ8N3V7 929 aa17.24■□□□□ 0.35
CLN3-229ENST00000567963 RDH13Q8NBN7 331 aa17.24■□□□□ 0.35
CLN3-229ENST00000567963 MRPS31Q92665 395 aaKnown RBP17.24■□□□□ 0.35
CLN3-229ENST00000567963 TRMT2BQ96GJ1 504 aaKnown RBP17.24■□□□□ 0.35
CLN3-229ENST00000567963 FUBP3Q96I24 572 aaKnown RBP eCLIP17.24■□□□□ 0.35
CLN3-229ENST00000567963 TADA3O75528 432 aa17.23■□□□□ 0.35
CLN3-229ENST00000567963 NOL4O94818 638 aa17.23■□□□□ 0.35
CLN3-229ENST00000567963 LMO2P25791 158 aa17.23■□□□□ 0.35
CLN3-229ENST00000567963 EHHADHQ08426 723 aa17.23■□□□□ 0.35
CLN3-229ENST00000567963 RUNX3Q13761 415 aa17.23■□□□□ 0.35
CLN3-229ENST00000567963 PUM1Q14671 1186 aaKnown RBP eCLIP17.23■□□□□ 0.35
CLN3-229ENST00000567963 FAM26FQ5R3K3 315 aa17.23■□□□□ 0.35
CLN3-229ENST00000567963 FOXD4L5Q5VV16 416 aaPredicted RBP17.23■□□□□ 0.35
CLN3-229ENST00000567963 KBTBD7Q8WVZ9 684 aa17.23■□□□□ 0.35
CLN3-229ENST00000567963 FOXD4L4Q8WXT5 416 aaPredicted RBP17.23■□□□□ 0.35
CLN3-229ENST00000567963 KIF9Q9HAQ2 790 aa17.23■□□□□ 0.35
CLN3-229ENST00000567963 HPS4Q9NQG7 708 aa17.23■□□□□ 0.35
CLN3-229ENST00000567963 AGPAT3Q9NRZ7 376 aa17.23■□□□□ 0.35
CLN3-229ENST00000567963 DLL3Q9NYJ7 618 aa17.23■□□□□ 0.35
CLN3-229ENST00000567963 OTOL1A6NHN0 477 aaPredicted RBP17.22■□□□□ 0.35
CLN3-229ENST00000567963 K7ESF4 209 aa17.22■□□□□ 0.35
CLN3-229ENST00000567963 POLR2DO15514 142 aaKnown RBP17.22■□□□□ 0.35
CLN3-229ENST00000567963 ATP2C2O75185 946 aa17.22■□□□□ 0.35
CLN3-229ENST00000567963 CST3P01034 146 aaPredicted RBP17.22■□□□□ 0.35
CLN3-229ENST00000567963 ZNF268Q14587 947 aaPredicted RBP17.22■□□□□ 0.35
CLN3-229ENST00000567963 SNRNP35Q16560 246 aaKnown RBP17.22■□□□□ 0.35
CLN3-229ENST00000567963 TRIM68Q6AZZ1 485 aa17.22■□□□□ 0.35
CLN3-229ENST00000567963 UNC13DQ70J99 1090 aa17.22■□□□□ 0.35
CLN3-229ENST00000567963 TRAPPC11Q7Z392 1133 aa17.22■□□□□ 0.35
CLN3-229ENST00000567963 RIN3Q8TB24 985 aa17.22■□□□□ 0.35
CLN3-229ENST00000567963 SCFD1Q8WVM8 642 aa17.22■□□□□ 0.35
CLN3-229ENST00000567963 EBF3Q9H4W6 596 aa17.22■□□□□ 0.35
CLN3-229ENST00000567963 MAGEF1Q9HAY2 307 aa17.22■□□□□ 0.35
CLN3-229ENST00000567963 C2orf42Q9NWW7 574 aa17.22■□□□□ 0.35
CLN3-229ENST00000567963 CDH9Q9ULB4 789 aa17.22■□□□□ 0.35
CLN3-229ENST00000567963 CLIC2O15247 247 aa17.21■□□□□ 0.35
CLN3-229ENST00000567963 ZSCAN22P10073 491 aaPredicted RBP17.21■□□□□ 0.35
CLN3-229ENST00000567963 TGM1P22735 817 aa17.21■□□□□ 0.35
CLN3-229ENST00000567963 CASP1P29466 404 aa17.21■□□□□ 0.35
CLN3-229ENST00000567963 MAGEA11P43364 429 aa17.21■□□□□ 0.35
CLN3-229ENST00000567963 SNRPFP62306 86 aaKnown RBP17.21■□□□□ 0.35
CLN3-229ENST00000567963 DMWDQ09019 674 aa17.21■□□□□ 0.35
CLN3-229ENST00000567963 FOXD4L6Q3SYB3 417 aaPredicted RBP17.21■□□□□ 0.35
CLN3-229ENST00000567963 FOXD4L3Q6VB84 417 aaPredicted RBP17.21■□□□□ 0.35
CLN3-229ENST00000567963 C4orf50Q6ZRC1 276 aa17.21■□□□□ 0.35
CLN3-229ENST00000567963 DGLUCYQ7Z3D6 616 aa17.21■□□□□ 0.35
CLN3-229ENST00000567963 SCN4BQ8IWT1 228 aa17.21■□□□□ 0.35
CLN3-229ENST00000567963 CHFRQ96EP1 664 aa17.21■□□□□ 0.35
CLN3-229ENST00000567963 CYP2S1Q96SQ9 504 aa17.21■□□□□ 0.35
CLN3-229ENST00000567963 MMS19Q96T76 1030 aa17.21■□□□□ 0.35
CLN3-229ENST00000567963 SYT15Q9BQS2 421 aa17.21■□□□□ 0.35
CLN3-229ENST00000567963 CRTAC1Q9NQ79 661 aa17.21■□□□□ 0.35
CLN3-229ENST00000567963 MAGEC2Q9UBF1 373 aaPredicted RBP17.21■□□□□ 0.35
CLN3-229ENST00000567963 GMEB2Q9UKD1 530 aa17.21■□□□□ 0.35
CLN3-229ENST00000567963 RAB23Q9ULC3 237 aa17.21■□□□□ 0.35
CLN3-229ENST00000567963 PCDHA7Q9UN72 937 aa17.21■□□□□ 0.35
CLN3-229ENST00000567963 GREB1Q4ZG55 1949 aa17.2■□□□□ 0.34
CLN3-229ENST00000567963 CHURC1-FNTBB4DL54 471 aa17.2■□□□□ 0.34
CLN3-229ENST00000567963 TRDMT1O14717 391 aaKnown RBP17.2■□□□□ 0.34
CLN3-229ENST00000567963 HRO43593 1189 aa17.2■□□□□ 0.34
CLN3-229ENST00000567963 F13A1P00488 732 aa17.2■□□□□ 0.34
CLN3-229ENST00000567963 PDGFRBP09619 1106 aa17.2■□□□□ 0.34
CLN3-229ENST00000567963 DLATP10515 647 aaKnown RBP17.2■□□□□ 0.34
CLN3-229ENST00000567963 TNNI1P19237 187 aa17.2■□□□□ 0.34
CLN3-229ENST00000567963 WARSP23381 471 aaKnown RBP17.2■□□□□ 0.34
CLN3-229ENST00000567963 CNR2P34972 360 aa17.2■□□□□ 0.34
CLN3-229ENST00000567963 FNTBP49356 437 aa17.2■□□□□ 0.34
CLN3-229ENST00000567963 PSMC1P62191 440 aaKnown RBP17.2■□□□□ 0.34
CLN3-229ENST00000567963 FAM160A1Q05DH4 1040 aa17.2■□□□□ 0.34
CLN3-229ENST00000567963 MAPRE1Q15691 268 aaKnown RBP17.2■□□□□ 0.34
CLN3-229ENST00000567963 RSPO4Q2I0M5 234 aaPredicted RBP17.2■□□□□ 0.34
CLN3-229ENST00000567963 TMEM196Q5HYL7 178 aa17.2■□□□□ 0.34
CLN3-229ENST00000567963 CC2D1AQ6P1N0 951 aaPredicted RBP17.2■□□□□ 0.34
CLN3-229ENST00000567963 LONP2Q86WA8 852 aa17.2■□□□□ 0.34
CLN3-229ENST00000567963 NELFCDQ8IXH7 590 aa17.2■□□□□ 0.34
CLN3-229ENST00000567963 FSIP1Q8NA03 581 aa17.2■□□□□ 0.34
CLN3-229ENST00000567963 FNBP1Q96RU3 617 aa17.2■□□□□ 0.34
CLN3-229ENST00000567963 SLC22A12Q96S37 553 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms