RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 TMEM191BP0C7N4 346 aa18.37■□□□□ 0.53
CLN3-216ENST00000565316 PCSK1P29120 753 aa18.37■□□□□ 0.53
CLN3-216ENST00000565316 CNR2P34972 360 aa18.37■□□□□ 0.53
CLN3-216ENST00000565316 FNTBP49356 437 aa18.37■□□□□ 0.53
CLN3-216ENST00000565316 ARHGAP8P85298 464 aa18.37■□□□□ 0.53
CLN3-216ENST00000565316 LMNB2Q03252 620 aa18.37■□□□□ 0.53
CLN3-216ENST00000565316 SURF1Q15526 300 aa18.37■□□□□ 0.53
CLN3-216ENST00000565316 SDHAF4Q5VUM1 108 aa18.37■□□□□ 0.53
CLN3-216ENST00000565316 FAM171BQ6P995 826 aa18.37■□□□□ 0.53
CLN3-216ENST00000565316 STXBP4Q6ZWJ1 553 aa18.37■□□□□ 0.53
CLN3-216ENST00000565316 EPM2AIP1Q7L775 607 aaPredicted RBP18.37■□□□□ 0.53
CLN3-216ENST00000565316 LONP2Q86WA8 852 aa18.37■□□□□ 0.53
CLN3-216ENST00000565316 ADGRF2Q8IZF7 708 aa18.37■□□□□ 0.53
CLN3-216ENST00000565316 OR5B17Q8NGF7 314 aa18.37■□□□□ 0.53
CLN3-216ENST00000565316 RIN3Q8TB24 985 aa18.37■□□□□ 0.53
CLN3-216ENST00000565316 CHFRQ96EP1 664 aa18.37■□□□□ 0.53
CLN3-216ENST00000565316 FUBP3Q96I24 572 aaKnown RBP eCLIP18.37■□□□□ 0.53
CLN3-216ENST00000565316 ANKRD36BP1Q96IX9 119 aa18.37■□□□□ 0.53
CLN3-216ENST00000565316 BACH2Q9BYV9 841 aa18.37■□□□□ 0.53
CLN3-216ENST00000565316 UXTQ9UBK9 157 aaPredicted RBP18.37■□□□□ 0.53
CLN3-216ENST00000565316 RAB23Q9ULC3 237 aa18.37■□□□□ 0.53
CLN3-216ENST00000565316 DENND4CQ5VZ89 1909 aa18.36■□□□□ 0.53
CLN3-216ENST00000565316 OTOL1A6NHN0 477 aaPredicted RBP18.36■□□□□ 0.53
CLN3-216ENST00000565316 TRDMT1O14717 391 aaKnown RBP18.36■□□□□ 0.53
CLN3-216ENST00000565316 EIF3DO15371 548 aaKnown RBP eCLIP18.36■□□□□ 0.53
CLN3-216ENST00000565316 LRP3O75074 770 aa18.36■□□□□ 0.53
CLN3-216ENST00000565316 RETP07949 1114 aa18.36■□□□□ 0.53
CLN3-216ENST00000565316 MAGEA11P43364 429 aa18.36■□□□□ 0.53
CLN3-216ENST00000565316 MYO1EQ12965 1108 aa18.36■□□□□ 0.53
CLN3-216ENST00000565316 RUNX3Q13761 415 aa18.36■□□□□ 0.53
CLN3-216ENST00000565316 CCDC142Q17RM4 750 aa18.36■□□□□ 0.53
CLN3-216ENST00000565316 DUOXA2Q1HG44 320 aa18.36■□□□□ 0.53
CLN3-216ENST00000565316 TMEM196Q5HYL7 178 aa18.36■□□□□ 0.53
CLN3-216ENST00000565316 LMBRD2Q68DH5 695 aaPredicted RBP18.36■□□□□ 0.53
CLN3-216ENST00000565316 CBWD2Q8IUF1 395 aa18.36■□□□□ 0.53
CLN3-216ENST00000565316 STKLD1Q8NE28 680 aa18.36■□□□□ 0.53
CLN3-216ENST00000565316 NOC3LQ8WTT2 800 aaKnown RBP18.36■□□□□ 0.53
CLN3-216ENST00000565316 KBTBD7Q8WVZ9 684 aa18.36■□□□□ 0.53
CLN3-216ENST00000565316 HPS3Q969F9 1004 aa18.36■□□□□ 0.53
CLN3-216ENST00000565316 HPDLQ96IR7 371 aa18.36■□□□□ 0.53
CLN3-216ENST00000565316 KIAA1586Q9HCI6 787 aa18.36■□□□□ 0.53
CLN3-216ENST00000565316 FOXD4L1Q9NU39 408 aa18.36■□□□□ 0.53
CLN3-216ENST00000565316 HSPBP1Q9NZL4 362 aa18.36■□□□□ 0.53
CLN3-216ENST00000565316 MAGED2Q9UNF1 606 aaPredicted RBP18.36■□□□□ 0.53
CLN3-216ENST00000565316 TULP1O00294 542 aaPredicted RBP18.35■□□□□ 0.53
CLN3-216ENST00000565316 HCRTO43612 131 aa18.35■□□□□ 0.53
CLN3-216ENST00000565316 AMPD3Q01432 767 aa18.35■□□□□ 0.53
CLN3-216ENST00000565316 PDGFRLQ15198 375 aa18.35■□□□□ 0.53
CLN3-216ENST00000565316 TRIM68Q6AZZ1 485 aa18.35■□□□□ 0.53
CLN3-216ENST00000565316 ZNF507Q8TCN5 953 aa18.35■□□□□ 0.53
CLN3-216ENST00000565316 ZNF396Q96N95 335 aaPredicted RBP18.35■□□□□ 0.53
CLN3-216ENST00000565316 EBF3Q9H4W6 596 aa18.35■□□□□ 0.53
CLN3-216ENST00000565316 SPTBN2O15020 2390 aa18.34■□□□□ 0.53
CLN3-216ENST00000565316 CUTAO60888 179 aa18.34■□□□□ 0.53
CLN3-216ENST00000565316 YEATS4O95619 227 aa18.34■□□□□ 0.53
CLN3-216ENST00000565316 TNNC2P02585 160 aa18.34■□□□□ 0.53
CLN3-216ENST00000565316 LMO2P25791 158 aa18.34■□□□□ 0.53
CLN3-216ENST00000565316 ATXN1P54253 815 aaKnown RBP18.34■□□□□ 0.53
CLN3-216ENST00000565316 SIM2Q14190 667 aaPredicted RBP18.34■□□□□ 0.53
CLN3-216ENST00000565316 LPAL2Q16609 132 aa18.34■□□□□ 0.53
CLN3-216ENST00000565316 FSTL4Q6MZW2 842 aa18.34■□□□□ 0.53
CLN3-216ENST00000565316 WDR5BQ86VZ2 330 aa18.34■□□□□ 0.53
CLN3-216ENST00000565316 SPATA2LQ8IUW3 424 aaPredicted RBP18.34■□□□□ 0.53
CLN3-216ENST00000565316 WDR49Q8IV35 697 aa18.34■□□□□ 0.53
CLN3-216ENST00000565316 IQUBQ8NA54 791 aa18.34■□□□□ 0.53
CLN3-216ENST00000565316 CEP295NLQ96MC4 621 aa18.34■□□□□ 0.53
CLN3-216ENST00000565316 C7orf25Q9BPX7 421 aa18.34■□□□□ 0.53
CLN3-216ENST00000565316 TFIP11Q9UBB9 837 aaKnown RBP18.34■□□□□ 0.53
CLN3-216ENST00000565316 CDH9Q9ULB4 789 aa18.34■□□□□ 0.53
CLN3-216ENST00000565316 USP18Q9UMW8 372 aa18.34■□□□□ 0.53
CLN3-216ENST00000565316 TGFB1I1O43294 461 aa18.33■□□□□ 0.53
CLN3-216ENST00000565316 ATP2C2O75185 946 aa18.33■□□□□ 0.53
CLN3-216ENST00000565316 ARSAP15289 507 aa18.33■□□□□ 0.53
CLN3-216ENST00000565316 WARSP23381 471 aaKnown RBP18.33■□□□□ 0.53
CLN3-216ENST00000565316 FAM160A1Q05DH4 1040 aa18.33■□□□□ 0.53
CLN3-216ENST00000565316 EHHADHQ08426 723 aa18.33■□□□□ 0.53
CLN3-216ENST00000565316 GRSF1Q12849 480 aaKnown RBP eCLIP18.33■□□□□ 0.53
CLN3-216ENST00000565316 ZNF77Q15935 545 aa18.33■□□□□ 0.53
CLN3-216ENST00000565316 CC2D1AQ6P1N0 951 aaPredicted RBP18.33■□□□□ 0.53
CLN3-216ENST00000565316 PKN3Q6P5Z2 889 aa18.33■□□□□ 0.53
CLN3-216ENST00000565316 SHC4Q6S5L8 630 aa18.33■□□□□ 0.53
CLN3-216ENST00000565316 VSTM1Q6UX27 236 aa18.33■□□□□ 0.53
CLN3-216ENST00000565316 C4orf50Q6ZRC1 276 aa18.33■□□□□ 0.53
CLN3-216ENST00000565316 PRR23BQ6ZRT6 265 aa18.33■□□□□ 0.53
CLN3-216ENST00000565316 TRAPPC11Q7Z392 1133 aa18.33■□□□□ 0.53
CLN3-216ENST00000565316 SPATA17Q96L03 361 aa18.33■□□□□ 0.53
CLN3-216ENST00000565316 SLC22A12Q96S37 553 aa18.33■□□□□ 0.53
CLN3-216ENST00000565316 SYT15Q9BQS2 421 aa18.33■□□□□ 0.53
CLN3-216ENST00000565316 CRTAC1Q9NQ79 661 aa18.33■□□□□ 0.53
CLN3-216ENST00000565316 AGPAT3Q9NRZ7 376 aa18.33■□□□□ 0.53
CLN3-216ENST00000565316 GCNT4Q9P109 453 aa18.33■□□□□ 0.53
CLN3-216ENST00000565316 R3HCC1Q9Y3T6 440 aaKnown RBP18.33■□□□□ 0.53
CLN3-216ENST00000565316 OBSL1O75147 1896 aa18.33■□□□□ 0.52
CLN3-216ENST00000565316 TRAV19A0A0A6YYK7 116 aa18.32■□□□□ 0.52
CLN3-216ENST00000565316 USP17L7P0C7H9 530 aa18.32■□□□□ 0.52
CLN3-216ENST00000565316 HOXC13P31276 330 aa18.32■□□□□ 0.52
CLN3-216ENST00000565316 SNRPFP62306 86 aaKnown RBP18.32■□□□□ 0.52
CLN3-216ENST00000565316 ASIC1P78348 528 aa18.32■□□□□ 0.52
CLN3-216ENST00000565316 AMPD2Q01433 879 aa18.32■□□□□ 0.52
CLN3-216ENST00000565316 SPEM2Q0P670 501 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms