RNA–Protein interactions for RNA: ENST00000564899.1

SF3B3-205, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-205ENST00000564899 FAM228BP0C875 321 aa11.78□□□□□ -0.52
SF3B3-205ENST00000564899 CHRNB2P17787 502 aa11.78□□□□□ -0.52
SF3B3-205ENST00000564899 TYMPP19971 482 aa11.78□□□□□ -0.52
SF3B3-205ENST00000564899 MSNP26038 577 aaKnown RBP11.78□□□□□ -0.52
SF3B3-205ENST00000564899 PBX3P40426 434 aa11.78□□□□□ -0.52
SF3B3-205ENST00000564899 LHX1P48742 406 aa11.78□□□□□ -0.52
SF3B3-205ENST00000564899 BCAR1P56945 870 aa11.78□□□□□ -0.52
SF3B3-205ENST00000564899 KRT83P78385 493 aa11.78□□□□□ -0.52
SF3B3-205ENST00000564899 FMO1Q01740 532 aa11.78□□□□□ -0.52
SF3B3-205ENST00000564899 SMAD2Q15796 467 aaKnown RBP11.78□□□□□ -0.52
SF3B3-205ENST00000564899 CTC1Q2NKJ3 1217 aa11.78□□□□□ -0.52
SF3B3-205ENST00000564899 METTL23Q86XA0 190 aa11.78□□□□□ -0.52
SF3B3-205ENST00000564899 RNF135Q8IUD6 432 aa11.78□□□□□ -0.52
SF3B3-205ENST00000564899 OLIG1Q8TAK6 271 aa11.78□□□□□ -0.52
SF3B3-205ENST00000564899 SPATA18Q8TC71 538 aa11.78□□□□□ -0.52
SF3B3-205ENST00000564899 KIAA1524Q8TCG1 905 aa11.78□□□□□ -0.52
SF3B3-205ENST00000564899 PDCL3Q9H2J4 239 aa11.78□□□□□ -0.52
SF3B3-205ENST00000564899 NSUN3Q9H649 340 aaKnown RBP11.78□□□□□ -0.52
SF3B3-205ENST00000564899 CWH43Q9H720 699 aa11.78□□□□□ -0.52
SF3B3-205ENST00000564899 ADAM28Q9UKQ2 775 aa11.78□□□□□ -0.52
SF3B3-205ENST00000564899 PCDHB8Q9UN66 801 aa11.78□□□□□ -0.52
SF3B3-205ENST00000564899 PPP2R2CQ9Y2T4 447 aa11.78□□□□□ -0.52
SF3B3-205ENST00000564899 NME7Q9Y5B8 376 aa11.78□□□□□ -0.52
SF3B3-205ENST00000564899 ADGRG1Q9Y653 693 aa11.78□□□□□ -0.52
SF3B3-205ENST00000564899 MRPL42Q9Y6G3 142 aaKnown RBP11.78□□□□□ -0.52
SF3B3-205ENST00000564899 DNAH14Q0VDD8 3507 aa11.78□□□□□ -0.52
SF3B3-205ENST00000564899 TDRD15B5MCY1 1934 aaKnown RBP11.78□□□□□ -0.52
SF3B3-205ENST00000564899 RIF1Q5UIP0 2472 aaKnown RBP11.78□□□□□ -0.52
SF3B3-205ENST00000564899 PTPRZ1P23471 2315 aaPredicted RBP11.77□□□□□ -0.52
SF3B3-205ENST00000564899 NT5C1B-RDH14C9J2C7 533 aa11.77□□□□□ -0.53
SF3B3-205ENST00000564899 GABRDO14764 452 aa11.77□□□□□ -0.53
SF3B3-205ENST00000564899 ZNF263O14978 683 aa11.77□□□□□ -0.53
SF3B3-205ENST00000564899 MED7O43513 233 aa11.77□□□□□ -0.53
SF3B3-205ENST00000564899 HCRTO43612 131 aa11.77□□□□□ -0.53
SF3B3-205ENST00000564899 LCA5LO95447 670 aa11.77□□□□□ -0.53
SF3B3-205ENST00000564899 CYP11A1P05108 521 aa11.77□□□□□ -0.53
SF3B3-205ENST00000564899 PDGFRBP09619 1106 aa11.77□□□□□ -0.53
SF3B3-205ENST00000564899 VDRP11473 427 aa11.77□□□□□ -0.53
SF3B3-205ENST00000564899 LAG3P18627 525 aa11.77□□□□□ -0.53
SF3B3-205ENST00000564899 ALDH7A1P49419 539 aaKnown RBP11.77□□□□□ -0.53
SF3B3-205ENST00000564899 CYP27A1Q02318 531 aa11.77□□□□□ -0.53
SF3B3-205ENST00000564899 ELAVL2Q12926 359 aaKnown RBP11.77□□□□□ -0.53
SF3B3-205ENST00000564899 CAMK1Q14012 370 aa11.77□□□□□ -0.53
SF3B3-205ENST00000564899 PTPROQ16827 1216 aa11.77□□□□□ -0.53
SF3B3-205ENST00000564899 PUS10Q3MIT2 529 aaKnown RBP11.77□□□□□ -0.53
SF3B3-205ENST00000564899 SGO2Q562F6 1265 aa11.77□□□□□ -0.53
SF3B3-205ENST00000564899 ACOT1Q86TX2 421 aa11.77□□□□□ -0.53
SF3B3-205ENST00000564899 TMEM173Q86WV6 379 aaPredicted RBP11.77□□□□□ -0.53
SF3B3-205ENST00000564899 PALB2Q86YC2 1186 aa11.77□□□□□ -0.53
SF3B3-205ENST00000564899 C17orf53Q8N3J3 647 aaPredicted RBP11.77□□□□□ -0.53
SF3B3-205ENST00000564899 SLC30A5Q8TAD4 765 aa11.77□□□□□ -0.53
SF3B3-205ENST00000564899 ZNF606Q8WXB4 792 aa11.77□□□□□ -0.53
SF3B3-205ENST00000564899 TFAP2BQ92481 460 aa11.77□□□□□ -0.53
SF3B3-205ENST00000564899 TNIP3Q96KP6 325 aa11.77□□□□□ -0.53
SF3B3-205ENST00000564899 HEXIM2Q96MH2 286 aaKnown RBP11.77□□□□□ -0.53
SF3B3-205ENST00000564899 ZNF558Q96NG5 402 aa11.77□□□□□ -0.53
SF3B3-205ENST00000564899 PCDHB18PQ96TA0 734 aa11.77□□□□□ -0.53
SF3B3-205ENST00000564899 ZSWIM1Q9BR11 485 aa11.77□□□□□ -0.53
SF3B3-205ENST00000564899 KCNH6Q9H252 994 aa11.77□□□□□ -0.53
SF3B3-205ENST00000564899 DPEP3Q9H4B8 488 aa11.77□□□□□ -0.53
SF3B3-205ENST00000564899 LUC7LQ9NQ29 371 aaKnown RBP11.77□□□□□ -0.53
SF3B3-205ENST00000564899 DDX43Q9NXZ2 648 aaKnown RBP11.77□□□□□ -0.53
SF3B3-205ENST00000564899 PRKAG3Q9UGI9 489 aa11.77□□□□□ -0.53
SF3B3-205ENST00000564899 NAGPAQ9UK23 515 aa11.77□□□□□ -0.53
SF3B3-205ENST00000564899 KIAA1257Q9ULG3 409 aa11.77□□□□□ -0.53
SF3B3-205ENST00000564899 REXO2Q9Y3B8 237 aaKnown RBP11.77□□□□□ -0.53
SF3B3-205ENST00000564899 SF3B1O75533 1304 aaKnown RBP eCLIP11.77□□□□□ -0.53
SF3B3-205ENST00000564899 DMXL1Q9Y485 3027 aa11.76□□□□□ -0.53
SF3B3-205ENST00000564899 CARNS1A5YM72 827 aa11.76□□□□□ -0.53
SF3B3-205ENST00000564899 TMCO5BA8MYB1 307 aa11.76□□□□□ -0.53
SF3B3-205ENST00000564899 SYN3O14994 580 aa11.76□□□□□ -0.53
SF3B3-205ENST00000564899 CCP110O43303 1012 aa11.76□□□□□ -0.53
SF3B3-205ENST00000564899 ZSCAN12O43309 604 aa11.76□□□□□ -0.53
SF3B3-205ENST00000564899 ACAT1P24752 427 aaKnown RBP11.76□□□□□ -0.53
SF3B3-205ENST00000564899 LMO2P25791 158 aa11.76□□□□□ -0.53
SF3B3-205ENST00000564899 PCSK1P29120 753 aa11.76□□□□□ -0.53
SF3B3-205ENST00000564899 TKTP29401 623 aaKnown RBP11.76□□□□□ -0.53
SF3B3-205ENST00000564899 MAGEA1P43355 309 aa11.76□□□□□ -0.53
SF3B3-205ENST00000564899 PSMC1P62191 440 aaKnown RBP11.76□□□□□ -0.53
SF3B3-205ENST00000564899 CLEC16AQ2KHT3 1053 aa11.76□□□□□ -0.53
SF3B3-205ENST00000564899 CCDC122Q5T0U0 273 aa11.76□□□□□ -0.53
SF3B3-205ENST00000564899 OVOS1Q6IE37 1185 aa11.76□□□□□ -0.53
SF3B3-205ENST00000564899 FUT10Q6P4F1 479 aa11.76□□□□□ -0.53
SF3B3-205ENST00000564899 ALKBH5Q6P6C2 394 aaKnown RBP11.76□□□□□ -0.53
SF3B3-205ENST00000564899 KCNT2Q6UVM3 1135 aa11.76□□□□□ -0.53
SF3B3-205ENST00000564899 TRIM72Q6ZMU5 477 aa11.76□□□□□ -0.53
SF3B3-205ENST00000564899 KIAA1328Q86T90 577 aa11.76□□□□□ -0.53
SF3B3-205ENST00000564899 PASD1Q8IV76 773 aa11.76□□□□□ -0.53
SF3B3-205ENST00000564899 CCAR2Q8N163 923 aaKnown RBP11.76□□□□□ -0.53
SF3B3-205ENST00000564899 CRYBG2Q8N1P7 616 aa11.76□□□□□ -0.53
SF3B3-205ENST00000564899 FIBCD1Q8N539 461 aa11.76□□□□□ -0.53
SF3B3-205ENST00000564899 BCL7CQ8WUZ0 217 aaPredicted RBP11.76□□□□□ -0.53
SF3B3-205ENST00000564899 SYT15Q9BQS2 421 aa11.76□□□□□ -0.53
SF3B3-205ENST00000564899 TRMT1Q9NXH9 659 aaKnown RBP11.76□□□□□ -0.53
SF3B3-205ENST00000564899 NENFQ9UMX5 172 aa11.76□□□□□ -0.53
SF3B3-205ENST00000564899 PCDHGC3Q9UN70 934 aa11.76□□□□□ -0.53
SF3B3-205ENST00000564899 PCDHA13Q9Y5I0 950 aa11.76□□□□□ -0.53
SF3B3-205ENST00000564899 KIAA1671Q9BY89 1806 aa11.75□□□□□ -0.53
SF3B3-205ENST00000564899 PLXNA3P51805 1871 aa11.75□□□□□ -0.53
SF3B3-205ENST00000564899 FNDC1Q4ZHG4 1894 aaPredicted RBP11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms