RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 MMP17Q9ULZ9 603 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 DNM3Q9UQ16 869 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 WNT6Q9Y6F9 365 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 ATXN2Q99700 1313 aaKnown RBP7.92□□□□□ -1.14
VPS4A-203ENST00000564399 TSC2P49815 1807 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 MAST4O15021 2626 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 FAM221BA6H8Z2 402 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 UPK3BL1B0FP48 263 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 UPK3BL2E5RIL1 263 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 CYB561D2O14569 222 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 PRPF40AO75400 957 aaKnown RBP7.91□□□□□ -1.14
VPS4A-203ENST00000564399 CKMP06732 381 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 USP17L7P0C7H9 530 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 CSH1P0DML2 217 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 CSH2P0DML3 217 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 HMGA1P17096 107 aaKnown RBP7.91□□□□□ -1.14
VPS4A-203ENST00000564399 PAX3P23760 479 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 P2RY2P41231 377 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 DPP6P42658 865 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 FAM193AP78312 1265 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 GFPT1Q06210 699 aaPredicted RBP7.91□□□□□ -1.14
VPS4A-203ENST00000564399 RAD51AP2Q09MP3 1159 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 SMARCB1Q12824 385 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 MAPK7Q13164 816 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 BYSLQ13895 437 aaKnown RBP7.91□□□□□ -1.14
VPS4A-203ENST00000564399 CRY1Q16526 586 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 KYAT1Q16773 422 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 EML3Q32P44 896 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 SDHAF4Q5VUM1 108 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 SPATA1Q5VX52 437 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 LYSMD4Q5XG99 296 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 RINT1Q6NUQ1 792 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 SLC23A3Q6PIS1 610 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 ZPBP2Q6X784 338 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 CENPQQ7L2Z9 268 aaPredicted RBP7.91□□□□□ -1.14
VPS4A-203ENST00000564399 LRRTM3Q86VH5 581 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 EFCAB13Q8IY85 973 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 DCP1BQ8IZD4 617 aaKnown RBP7.91□□□□□ -1.14
VPS4A-203ENST00000564399 FRMD1Q8N878 549 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 STKLD1Q8NE28 680 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 WHAMMQ8TF30 809 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 HNRNPLLQ8WVV9 542 aaKnown RBP7.91□□□□□ -1.14
VPS4A-203ENST00000564399 HMGB4Q8WW32 186 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 FNBP1Q96RU3 617 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 CYP2S1Q96SQ9 504 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 PYM1Q9BRP8 204 aaKnown RBP7.91□□□□□ -1.14
VPS4A-203ENST00000564399 PI4K2AQ9BTU6 479 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 LINC00597Q9H2U6 94 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 CCDC86Q9H6F5 360 aaKnown RBP7.91□□□□□ -1.14
VPS4A-203ENST00000564399 POLMQ9NP87 494 aaPredicted RBP7.91□□□□□ -1.14
VPS4A-203ENST00000564399 FSCN3Q9NQT6 498 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 KCNG1Q9UIX4 513 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 SLC6A14Q9UN76 642 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 PCDHB9Q9Y5E1 797 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 PCDHB5Q9Y5E4 795 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 PLXND1Q9Y4D7 1925 aa7.91□□□□□ -1.14
VPS4A-203ENST00000564399 TRAV19A0A0A6YYK7 116 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 ANTXRLA6NF34 631 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 K7EQS6 105 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 EPB41L2O43491 1005 aaKnown RBP7.9□□□□□ -1.14
VPS4A-203ENST00000564399 KLF8O95600 359 aaPredicted RBP7.9□□□□□ -1.14
VPS4A-203ENST00000564399 NFATC1O95644 943 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 CAPNS1P04632 268 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 CYP11A1P05108 521 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 MAPTP10636 758 aaKnown RBP7.9□□□□□ -1.14
VPS4A-203ENST00000564399 PLS3P13797 630 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 ITPKAP23677 461 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 GPR15P49685 360 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 LIG4P49917 911 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 GUCY1B3Q02153 619 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 ORC2Q13416 577 aaPredicted RBP7.9□□□□□ -1.14
VPS4A-203ENST00000564399 HNRNPDQ14103 355 aaKnown RBP7.9□□□□□ -1.14
VPS4A-203ENST00000564399 ANKRD1Q15327 319 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 ZRSR1Q15695 479 aaKnown RBP7.9□□□□□ -1.14
VPS4A-203ENST00000564399 ZNF77Q15935 545 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 ENOX2Q16206 610 aaKnown RBP7.9□□□□□ -1.14
VPS4A-203ENST00000564399 DUOXA1Q1HG43 343 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 TTC38Q5R3I4 469 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 C9orf57Q5W0N0 161 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 KRT79Q5XKE5 535 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 WSCD1Q658N2 575 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 JADE1Q6IE81 842 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 TMEM92Q6UXU6 159 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 C1orf186Q6ZWK4 172 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 RAB44Q7Z6P3 723 aaPredicted RBP7.9□□□□□ -1.14
VPS4A-203ENST00000564399 MINDY1Q8N5J2 469 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 DEFB119Q8N690 84 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 ALLCQ8N6M5 410 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 ARL14EPQ8N8R7 260 aaPredicted RBP7.9□□□□□ -1.14
VPS4A-203ENST00000564399 TXNDC5Q8NBS9 432 aaKnown RBP7.9□□□□□ -1.14
VPS4A-203ENST00000564399 SPRYD3Q8NCJ5 442 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 TMEM161BQ8NDZ6 487 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 OLIG1Q8TAK6 271 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 CEP76Q8TAP6 659 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 SH3RF2Q8TEC5 729 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 SPIRE2Q8WWL2 714 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 LRIG1Q96JA1 1093 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 SLC22A12Q96S37 553 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 TSPAN18Q96SJ8 248 aa7.9□□□□□ -1.14
VPS4A-203ENST00000564399 NTPCRQ9BSD7 190 aaKnown RBP7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms