RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 SHKBP1Q8TBC3 707 aa14.29□□□□□ -0.12
CLK3-213ENST00000563842 GIPC2Q8TF65 315 aa14.29□□□□□ -0.12
CLK3-213ENST00000563842 FAXDC2Q96IV6 333 aa14.29□□□□□ -0.12
CLK3-213ENST00000563842 LPIN3Q9BQK8 851 aa14.29□□□□□ -0.12
CLK3-213ENST00000563842 KCNH6Q9H252 994 aa14.29□□□□□ -0.12
CLK3-213ENST00000563842 ATXN3LQ9H3M9 355 aa14.29□□□□□ -0.12
CLK3-213ENST00000563842 MMRN2Q9H8L6 949 aa14.29□□□□□ -0.12
CLK3-213ENST00000563842 SLC2A4RGQ9NR83 387 aa14.29□□□□□ -0.12
CLK3-213ENST00000563842 EHD2Q9NZN4 543 aa14.29□□□□□ -0.12
CLK3-213ENST00000563842 ARMCX3Q9UH62 379 aaPredicted RBP14.29□□□□□ -0.12
CLK3-213ENST00000563842 ATP8B3O60423 1300 aa14.29□□□□□ -0.12
CLK3-213ENST00000563842 SOBPA7XYQ1 873 aa14.28□□□□□ -0.12
CLK3-213ENST00000563842 GOLGA6L22H0YM25 854 aa14.28□□□□□ -0.12
CLK3-213ENST00000563842 BIN1O00499 593 aa14.28□□□□□ -0.12
CLK3-213ENST00000563842 TRIM66O15016 1216 aa14.28□□□□□ -0.12
CLK3-213ENST00000563842 ATP2C2O75185 946 aa14.28□□□□□ -0.12
CLK3-213ENST00000563842 MOSPD3O75425 235 aa14.28□□□□□ -0.12
CLK3-213ENST00000563842 FGFR1OPO95684 399 aaKnown RBP14.28□□□□□ -0.12
CLK3-213ENST00000563842 ANXA13P27216 316 aa14.28□□□□□ -0.12
CLK3-213ENST00000563842 MXI1P50539 228 aa14.28□□□□□ -0.12
CLK3-213ENST00000563842 PSMC1P62191 440 aaKnown RBP14.28□□□□□ -0.12
CLK3-213ENST00000563842 PPP3CAQ08209 521 aa14.28□□□□□ -0.12
CLK3-213ENST00000563842 DDR2Q16832 855 aa14.28□□□□□ -0.12
CLK3-213ENST00000563842 MDH1BQ5I0G3 518 aa14.28□□□□□ -0.12
CLK3-213ENST00000563842 KLHL10Q6JEL2 608 aa14.28□□□□□ -0.12
CLK3-213ENST00000563842 GAREM2Q75VX8 874 aa14.28□□□□□ -0.12
CLK3-213ENST00000563842 FRMD5Q7Z6J6 570 aa14.28□□□□□ -0.12
CLK3-213ENST00000563842 FILIP1Q7Z7B0 1213 aa14.28□□□□□ -0.12
CLK3-213ENST00000563842 UNC93AQ86WB7 457 aa14.28□□□□□ -0.12
CLK3-213ENST00000563842 SCN4BQ8IWT1 228 aa14.28□□□□□ -0.12
CLK3-213ENST00000563842 B3GALNT2Q8NCR0 500 aa14.28□□□□□ -0.12
CLK3-213ENST00000563842 NELFBQ8WX92 580 aa14.28□□□□□ -0.12
CLK3-213ENST00000563842 SMARCD2Q92925 531 aa14.28□□□□□ -0.12
CLK3-213ENST00000563842 MYLPFQ96A32 169 aa14.28□□□□□ -0.12
CLK3-213ENST00000563842 EEF2KMTQ96G04 330 aa14.28□□□□□ -0.12
CLK3-213ENST00000563842 SPATA17Q96L03 361 aa14.28□□□□□ -0.12
CLK3-213ENST00000563842 ASB16Q96NS5 453 aa14.28□□□□□ -0.12
CLK3-213ENST00000563842 IPO9Q96P70 1041 aaKnown RBP14.28□□□□□ -0.12
CLK3-213ENST00000563842 SMOC2Q9H3U7 446 aa14.28□□□□□ -0.12
CLK3-213ENST00000563842 SMYD3Q9H7B4 428 aa14.28□□□□□ -0.12
CLK3-213ENST00000563842 CYP3A43Q9HB55 503 aa14.28□□□□□ -0.12
CLK3-213ENST00000563842 TRPV4Q9HBA0 871 aa14.28□□□□□ -0.12
CLK3-213ENST00000563842 CRTAC1Q9NQ79 661 aa14.28□□□□□ -0.12
CLK3-213ENST00000563842 MIA3Q5JRA6 1907 aa14.27□□□□□ -0.12
CLK3-213ENST00000563842 TRIM49BA6NDI0 452 aa14.27□□□□□ -0.13
CLK3-213ENST00000563842 PPP1R3GB7ZBB8 358 aa14.27□□□□□ -0.13
CLK3-213ENST00000563842 HCRTO43612 131 aa14.27□□□□□ -0.13
CLK3-213ENST00000563842 NARSO43776 548 aaKnown RBP14.27□□□□□ -0.13
CLK3-213ENST00000563842 GNA14O95837 355 aa14.27□□□□□ -0.13
CLK3-213ENST00000563842 CFHP08603 1231 aa14.27□□□□□ -0.13
CLK3-213ENST00000563842 CD44P16070 742 aaKnown RBP14.27□□□□□ -0.13
CLK3-213ENST00000563842 GJA1P17302 382 aa14.27□□□□□ -0.13
CLK3-213ENST00000563842 RFX1P22670 979 aa14.27□□□□□ -0.13
CLK3-213ENST00000563842 DDX6P26196 483 aaKnown RBP eCLIP14.27□□□□□ -0.13
CLK3-213ENST00000563842 GRIK1P39086 918 aa14.27□□□□□ -0.13
CLK3-213ENST00000563842 CDR1P51861 262 aa14.27□□□□□ -0.13
CLK3-213ENST00000563842 PMS1P54277 932 aaKnown RBP14.27□□□□□ -0.13
CLK3-213ENST00000563842 CDH8P55286 799 aa14.27□□□□□ -0.13
CLK3-213ENST00000563842 NOP14P78316 857 aaKnown RBP14.27□□□□□ -0.13
CLK3-213ENST00000563842 PAK1Q13153 545 aa14.27□□□□□ -0.13
CLK3-213ENST00000563842 CAMK4Q16566 473 aa14.27□□□□□ -0.13
CLK3-213ENST00000563842 DCAF17Q5H9S7 520 aaPredicted RBP14.27□□□□□ -0.13
CLK3-213ENST00000563842 WDR44Q5JSH3 913 aa14.27□□□□□ -0.13
CLK3-213ENST00000563842 FAM78AQ5JUQ0 283 aa14.27□□□□□ -0.13
CLK3-213ENST00000563842 SCARA5Q6ZMJ2 495 aa14.27□□□□□ -0.13
CLK3-213ENST00000563842 TTC39CQ8N584 583 aa14.27□□□□□ -0.13
CLK3-213ENST00000563842 FBXL13Q8NEE6 735 aa14.27□□□□□ -0.13
CLK3-213ENST00000563842 ZSCAN18Q8TBC5 510 aaPredicted RBP14.27□□□□□ -0.13
CLK3-213ENST00000563842 DEPDC1BQ8WUY9 529 aa14.27□□□□□ -0.13
CLK3-213ENST00000563842 TRMT2BQ96GJ1 504 aaKnown RBP14.27□□□□□ -0.13
CLK3-213ENST00000563842 PCED1BQ96HM7 432 aa14.27□□□□□ -0.13
CLK3-213ENST00000563842 SHDQ96IW2 340 aa14.27□□□□□ -0.13
CLK3-213ENST00000563842 PRRX2Q99811 253 aa14.27□□□□□ -0.13
CLK3-213ENST00000563842 KXD1Q9BQD3 176 aa14.27□□□□□ -0.13
CLK3-213ENST00000563842 ELOVL4Q9GZR5 314 aa14.27□□□□□ -0.13
CLK3-213ENST00000563842 FAM124BQ9H5Z6 455 aaPredicted RBP14.27□□□□□ -0.13
CLK3-213ENST00000563842 TASP1Q9H6P5 420 aa14.27□□□□□ -0.13
CLK3-213ENST00000563842 ZNF334Q9HCZ1 680 aaPredicted RBP14.27□□□□□ -0.13
CLK3-213ENST00000563842 MAGED2Q9UNF1 606 aaPredicted RBP14.27□□□□□ -0.13
CLK3-213ENST00000563842 KMT2EQ8IZD2 1858 aa14.27□□□□□ -0.13
CLK3-213ENST00000563842 SLC38A8A6NNN8 435 aa14.26□□□□□ -0.13
CLK3-213ENST00000563842 DPYSL4O14531 572 aa14.26□□□□□ -0.13
CLK3-213ENST00000563842 NOL4O94818 638 aa14.26□□□□□ -0.13
CLK3-213ENST00000563842 BMP6P22004 513 aa14.26□□□□□ -0.13
CLK3-213ENST00000563842 BDNFP23560 247 aa14.26□□□□□ -0.13
CLK3-213ENST00000563842 WEE1P30291 646 aa14.26□□□□□ -0.13
CLK3-213ENST00000563842 GPC5P78333 572 aa14.26□□□□□ -0.13
CLK3-213ENST00000563842 CCDC40Q4G0X9 1142 aa14.26□□□□□ -0.13
CLK3-213ENST00000563842 GPR158Q5T848 1215 aa14.26□□□□□ -0.13
CLK3-213ENST00000563842 TANGO2Q6ICL3 276 aa14.26□□□□□ -0.13
CLK3-213ENST00000563842 TTI2Q6NXR4 508 aa14.26□□□□□ -0.13
CLK3-213ENST00000563842 SIX5Q8N196 739 aa14.26□□□□□ -0.13
CLK3-213ENST00000563842 GPR152Q8TDT2 470 aa14.26□□□□□ -0.13
CLK3-213ENST00000563842 TAS1R2Q8TE23 839 aa14.26□□□□□ -0.13
CLK3-213ENST00000563842 MRPS31Q92665 395 aaKnown RBP14.26□□□□□ -0.13
CLK3-213ENST00000563842 MYRFLQ96LU7 910 aa14.26□□□□□ -0.13
CLK3-213ENST00000563842 RPP25Q9BUL9 199 aaKnown RBP14.26□□□□□ -0.13
CLK3-213ENST00000563842 TRMT61BQ9BVS5 477 aaKnown RBP14.26□□□□□ -0.13
CLK3-213ENST00000563842 BCO2Q9BYV7 579 aa14.26□□□□□ -0.13
CLK3-213ENST00000563842 NIF3L1Q9GZT8 377 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms