RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 DDX50Q9BQ39 737 aaKnown RBP6.5□□□□□ -1.37
CLK3-212ENST00000563418 AIFM2Q9BRQ8 373 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 TMEM206Q9H813 350 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 PNMA3Q9UL41 463 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 ZNF652Q9Y2D9 606 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 ASB3Q9Y575 518 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 NUP153P49790 1475 aaKnown RBP6.5□□□□□ -1.37
CLK3-212ENST00000563418 KRT19P08727 400 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 CPA2P48052 419 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 CCR3P51677 355 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 ITGA1P56199 1179 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 MAPK11Q15759 364 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 EZH2Q15910 746 aaKnown RBP6.5□□□□□ -1.37
CLK3-212ENST00000563418 MTHFSDQ2M296 383 aaKnown RBP6.5□□□□□ -1.37
CLK3-212ENST00000563418 SRBD1Q8N5C6 995 aaKnown RBP6.5□□□□□ -1.37
CLK3-212ENST00000563418 SLC35G2Q8TBE7 412 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 XAGE3Q8WTP9 111 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 H7C0S8 307 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 CRYZL1O95825 349 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 ATF6P18850 670 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 FASP25445 335 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 HNRNPFP52597 415 aaKnown RBP6.5□□□□□ -1.37
CLK3-212ENST00000563418 HK2P52789 917 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 THOP1P52888 689 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 AQP5P55064 265 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 C12orf60Q5U649 245 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 TRIQKQ629K1 86 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 C12orf56Q8IXR9 622 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 PPM1KQ8N3J5 372 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 CHCHD4Q8N4Q1 142 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 TLR10Q9BXR5 811 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 ZNF277Q9NRM2 450 aaPredicted RBP6.5□□□□□ -1.37
CLK3-212ENST00000563418 QPCTLQ9NXS2 382 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 ARPP21Q9UBL0 812 aaPredicted RBP6.5□□□□□ -1.37
CLK3-212ENST00000563418 CHD2O14647 1828 aaKnown RBP6.5□□□□□ -1.37
CLK3-212ENST00000563418 WDR64B1ANS9 1081 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 TM7SF2O76062 418 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 PRKACBP22694 351 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 GRK3P35626 688 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 CASP2P42575 452 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 KCNH2Q12809 1159 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 KRT74Q7RTS7 529 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 OR8H2Q8N162 312 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 MED30Q96HR3 178 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 AIFM3Q96NN9 605 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 C6orf62Q9GZU0 229 aaPredicted RBP6.5□□□□□ -1.37
CLK3-212ENST00000563418 COG4Q9H9E3 785 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 CACYBPQ9HB71 228 aaKnown RBP6.5□□□□□ -1.37
CLK3-212ENST00000563418 S100A14Q9HCY8 104 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 CCDC177Q9NQR7 707 aaPredicted RBP6.5□□□□□ -1.37
CLK3-212ENST00000563418 EMILIN3Q9NT22 766 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 TMEM9Q9P0T7 183 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 ASAP1Q9ULH1 1129 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 ZMYM2Q9UBW7 1377 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 MADDQ8WXG6 1647 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 CIAO1O76071 339 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 NADKO95544 446 aaPredicted RBP6.5□□□□□ -1.37
CLK3-212ENST00000563418 CCNFP41002 786 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 LAMC2Q13753 1193 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 PUM3Q15397 648 aaKnown RBP6.5□□□□□ -1.37
CLK3-212ENST00000563418 FAM45BPQ6NSW5 357 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 TBC1D16Q8TBP0 767 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 CELF4Q9BZC1 486 aaKnown RBP6.5□□□□□ -1.37
CLK3-212ENST00000563418 DENND2DQ9H6A0 471 aaPredicted RBP6.5□□□□□ -1.37
CLK3-212ENST00000563418 EPB41L4AQ9HCS5 686 aaPredicted RBP6.5□□□□□ -1.37
CLK3-212ENST00000563418 PSMD13Q9UNM6 376 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 INPP5FQ9Y2H2 1132 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 IQGAP1P46940 1657 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 A6NJR5 290 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 SPDYE16A6NNV3 312 aaPredicted RBP6.5□□□□□ -1.37
CLK3-212ENST00000563418 TTC34A8MYJ7 566 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 SULT1B1O43704 296 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 COBLO75128 1261 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 ARSEP51690 589 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 KLHDC7AQ5VTJ3 777 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 C4orf22Q6V702 233 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 STRA8Q7Z7C7 330 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 CCDC60Q8IWA6 550 aaPredicted RBP6.5□□□□□ -1.37
CLK3-212ENST00000563418 METTL13Q8N6R0 699 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 TTC8Q8TAM2 541 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 SMARCAL1Q9NZC9 954 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 PCSK1NQ9UHG2 260 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 RAPGEFL1Q9UHV5 662 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 MOSPD1Q9UJG1 213 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 MKLN1Q9UL63 735 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 AFG3L2Q9Y4W6 797 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 FRMPD4Q14CM0 1322 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 SNAP23O00161 211 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 APOL3O95236 402 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 PDGFRBP09619 1106 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 DDX5P17844 614 aaKnown RBP6.5□□□□□ -1.37
CLK3-212ENST00000563418 EXOSC10Q01780 885 aaKnown RBP6.5□□□□□ -1.37
CLK3-212ENST00000563418 MOGQ16653 247 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 ANKARQ7Z5J8 1434 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 SGMS1Q86VZ5 419 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 ZSWIM1Q9BR11 485 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 PICK1Q9NRD5 415 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 THAP1Q9NVV9 213 aa6.5□□□□□ -1.37
CLK3-212ENST00000563418 SETD1BQ9UPS6 1966 aaKnown RBP6.5□□□□□ -1.37
CLK3-212ENST00000563418 CLOCKO15516 846 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms