RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 PPP3CCP48454 512 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 NCKAP1LP55160 1127 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 RAB14P61106 215 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 CCDC15Q0P6D6 951 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 CRYMQ14894 314 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 FIGNQ5HY92 759 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 MRNIPQ6NTE8 343 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 KIAA1257Q9ULG3 409 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 F8W810 466 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 PDGFRBP09619 1106 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 SLC2A3P11169 496 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 NQO1P15559 274 aaKnown RBP13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 NUDT2P50583 147 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 DCAF6Q58WW2 860 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 CEP78Q5JTW2 689 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 IYDQ6PHW0 289 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 GPR141Q7Z602 305 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 FAM71DQ8N9W8 422 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 SLC7A14Q8TBB6 771 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 MAGEB18Q96M61 343 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 LBHD1Q9BQE6 289 aaPredicted RBP13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 MXRA8Q9BRK3 442 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 DAGLAQ9Y4D2 1042 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 GAS2O43903 313 aaKnown RBP13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 GTF2H1P32780 548 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 CHRNB3Q05901 458 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 STRIP1Q5VSL9 837 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 CACHD1Q5VU97 1274 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 LAYNQ6UX15 382 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 USP49Q70CQ1 688 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 TFB1MQ8WVM0 346 aaKnown RBP13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 PPP2R3CQ969Q6 453 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 SMARCAL1Q9NZC9 954 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 HEY2Q9UBP5 337 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 KDM6AO15550 1401 aaPredicted RBP13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 UGGT1Q9NYU2 1555 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 VWA5AO00534 786 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 CAPZA2P47755 286 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 GEMP55040 296 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 PCSK7Q16549 785 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 HDDC2Q7Z4H3 204 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 ZNF512Q96ME7 567 aaPredicted RBP13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 ANKRD27Q96NW4 1050 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 THUMPD3Q9BV44 507 aaKnown RBP13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 MUC3BQ9H195 1237 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 PRR12Q9ULL5 1215 aa13.72□□□□□ -0.21
CSPG4P11-201ENST00000560634 FLT1P17948 1338 aa13.71□□□□□ -0.21
CSPG4P11-201ENST00000560634 STX7O15400 261 aaKnown RBP13.71□□□□□ -0.21
CSPG4P11-201ENST00000560634 TWF1Q12792 350 aa13.71□□□□□ -0.21
CSPG4P11-201ENST00000560634 MAPRE1Q15691 268 aaKnown RBP13.71□□□□□ -0.21
CSPG4P11-201ENST00000560634 KRT78Q8N1N4 520 aa13.71□□□□□ -0.21
CSPG4P11-201ENST00000560634 VCPKMTQ9H867 229 aa13.71□□□□□ -0.21
CSPG4P11-201ENST00000560634 WHRNQ9P202 907 aa13.71□□□□□ -0.21
CSPG4P11-201ENST00000560634 PPP1R3GB7ZBB8 358 aa13.71□□□□□ -0.21
CSPG4P11-201ENST00000560634 HBP1O60381 514 aa13.71□□□□□ -0.21
CSPG4P11-201ENST00000560634 DGKIO75912 1065 aa13.71□□□□□ -0.21
CSPG4P11-201ENST00000560634 MYCP01106 439 aaPredicted RBP13.71□□□□□ -0.21
CSPG4P11-201ENST00000560634 ATP6V1B1P15313 513 aa13.71□□□□□ -0.21
CSPG4P11-201ENST00000560634 BRD2P25440 801 aaKnown RBP13.71□□□□□ -0.21
CSPG4P11-201ENST00000560634 CPA2P48052 419 aa13.71□□□□□ -0.21
CSPG4P11-201ENST00000560634 PRKCEQ02156 737 aa13.71□□□□□ -0.21
CSPG4P11-201ENST00000560634 RCN1Q15293 331 aa13.71□□□□□ -0.21
CSPG4P11-201ENST00000560634 APBB2Q92870 758 aa13.71□□□□□ -0.21
CSPG4P11-201ENST00000560634 VPS50Q96JG6 964 aa13.71□□□□□ -0.21
CSPG4P11-201ENST00000560634 FAM111AQ96PZ2 611 aa13.71□□□□□ -0.21
CSPG4P11-201ENST00000560634 DIABLOQ9NR28 239 aa13.71□□□□□ -0.21
CSPG4P11-201ENST00000560634 CTNNAL1Q9UBT7 734 aa13.71□□□□□ -0.21
CSPG4P11-201ENST00000560634 CNTFP26441 200 aa13.71□□□□□ -0.22
CSPG4P11-201ENST00000560634 PRIM2P49643 509 aa13.71□□□□□ -0.22
CSPG4P11-201ENST00000560634 CTCFP49711 727 aaPredicted RBP13.71□□□□□ -0.22
CSPG4P11-201ENST00000560634 ATXN3P54252 364 aaPredicted RBP13.71□□□□□ -0.22
CSPG4P11-201ENST00000560634 SF3B3Q15393 1217 aaKnown RBP13.71□□□□□ -0.22
CSPG4P11-201ENST00000560634 ZC2HC1CQ53FD0 456 aaPredicted RBP13.71□□□□□ -0.22
CSPG4P11-201ENST00000560634 ZNF786Q8N393 782 aa13.71□□□□□ -0.22
CSPG4P11-201ENST00000560634 SPASTQ9UBP0 616 aa13.71□□□□□ -0.22
CSPG4P11-201ENST00000560634 FKBP6O75344 327 aa13.71□□□□□ -0.22
CSPG4P11-201ENST00000560634 GRAP2O75791 330 aa13.71□□□□□ -0.22
CSPG4P11-201ENST00000560634 TGM2P21980 687 aa13.71□□□□□ -0.22
CSPG4P11-201ENST00000560634 GRK2P25098 689 aa13.71□□□□□ -0.22
CSPG4P11-201ENST00000560634 BTKQ06187 659 aa13.71□□□□□ -0.22
CSPG4P11-201ENST00000560634 HHIPL2Q6UWX4 724 aa13.71□□□□□ -0.22
CSPG4P11-201ENST00000560634 C16orf86Q6ZW13 317 aa13.71□□□□□ -0.22
CSPG4P11-201ENST00000560634 SLC25A41Q8N5S1 370 aa13.71□□□□□ -0.22
CSPG4P11-201ENST00000560634 GTF3C2Q8WUA4 911 aaPredicted RBP13.71□□□□□ -0.22
CSPG4P11-201ENST00000560634 JADE3Q92613 823 aa13.71□□□□□ -0.22
CSPG4P11-201ENST00000560634 CRAMP1Q96RY5 1269 aa13.71□□□□□ -0.22
CSPG4P11-201ENST00000560634 IL1RL2Q9HB29 575 aa13.71□□□□□ -0.22
CSPG4P11-201ENST00000560634 USE1Q9NZ43 259 aa13.71□□□□□ -0.22
CSPG4P11-201ENST00000560634 KDM6BO15054 1643 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 RNF103O00237 685 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 ZBTB39O15060 712 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 PDHBP11177 359 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 ITGA4P13612 1032 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 CYP11B2P19099 503 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 NCALDP61601 193 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 GLB1LQ6UWU2 654 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 DDX53Q86TM3 631 aaKnown RBP13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 KCNB2Q92953 911 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 SLITRK1Q96PX8 696 aa13.7□□□□□ -0.22
CSPG4P11-201ENST00000560634 RPS6KL1Q9Y6S9 549 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms