RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 FHOD1Q9Y613 1164 aa10.71□□□□□ -0.69
USP3-216ENST00000559873 LINC01565O15544 149 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 MED7O43513 233 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 HCRTO43612 131 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 GLP2RO95838 553 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 TPM1P09493 284 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 CCDC172P0C7W6 258 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 SPATA31D3P0C874 917 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 FAM200BP0CF97 657 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 HAPLN1P10915 354 aaPredicted RBP10.7□□□□□ -0.7
USP3-216ENST00000559873 VDRP11473 427 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 ACO1P21399 889 aaKnown RBP10.7□□□□□ -0.7
USP3-216ENST00000559873 KCNA5P22460 613 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 RAD23BP54727 409 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 EPHB3P54753 998 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 BPIFB4P59827 614 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 POLR2FP61218 127 aaKnown RBP10.7□□□□□ -0.7
USP3-216ENST00000559873 DUSP4Q13115 394 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 ORC1Q13415 861 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 TRIM14Q14142 442 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 NR1I3Q14994 352 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 PUS10Q3MIT2 529 aaKnown RBP10.7□□□□□ -0.7
USP3-216ENST00000559873 IQCEQ6IPM2 695 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 SARM1Q6SZW1 724 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 SPATA31D4Q6ZUB0 917 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 FAM35AQ86V20 835 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 LRRTM3Q86VH5 581 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 SLC4A11Q8NBS3 891 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 ATAD1Q8NBU5 361 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 LEMD2Q8NC56 503 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 SLC2A14Q8TDB8 520 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 WHAMMQ8TF30 809 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 KAT5Q92993 513 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 CYFIP2Q96F07 1278 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 NECTIN4Q96NY8 510 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 TWNKQ96RR1 684 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 STK33Q9BYT3 514 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 XPO4Q9C0E2 1151 aaKnown RBP10.7□□□□□ -0.7
USP3-216ENST00000559873 GANQ9H2C0 597 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 DMAP1Q9NPF5 467 aaPredicted RBP10.7□□□□□ -0.7
USP3-216ENST00000559873 KRT82Q9NSB4 513 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 FAM49BQ9NUQ9 324 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 THEGQ9P2T0 379 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 CD207Q9UJ71 328 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 CNTN6Q9UQ52 1028 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 ASB3Q9Y575 518 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 PLXNA3P51805 1871 aa10.7□□□□□ -0.7
USP3-216ENST00000559873 ITIH6Q6UXX5 1313 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 F8VZ95 297 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 TEX33O43247 280 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 ATP2C2O75185 946 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 AP1G2O75843 785 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 FGF19O95750 216 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 CCDC130P13994 396 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 ADORA2BP29275 332 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 GNA15P30679 374 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 GRIK1P39086 918 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 STAT1P42224 750 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 MTHFRP42898 656 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 PDE6CP51160 858 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 ZNF132P52740 706 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 BCAT1P54687 386 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 APBA1Q02410 837 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 PTK2Q05397 1052 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 TWF1Q12792 350 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 SMAD4Q13485 552 aaKnown RBP10.69□□□□□ -0.7
USP3-216ENST00000559873 DRAP1Q14919 205 aaPredicted RBP10.69□□□□□ -0.7
USP3-216ENST00000559873 MEA1Q16626 185 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 FIGNQ5HY92 759 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 ATAT1Q5SQI0 421 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 RARS2Q5T160 578 aaKnown RBP10.69□□□□□ -0.7
USP3-216ENST00000559873 ARHGAP17Q68EM7 881 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 GJB7Q6PEY0 223 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 SCN4BQ8IWT1 228 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 SMRP1Q8NCR6 262 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 SMG7Q92540 1137 aaKnown RBP10.69□□□□□ -0.7
USP3-216ENST00000559873 C8orf48Q96LL4 319 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 ZNF512Q96ME7 567 aaPredicted RBP10.69□□□□□ -0.7
USP3-216ENST00000559873 NAP1L5Q96NT1 182 aaPredicted RBP10.69□□□□□ -0.7
USP3-216ENST00000559873 GCNAQ96QF7 691 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 HNRNPABQ99729 332 aaKnown RBP10.69□□□□□ -0.7
USP3-216ENST00000559873 NAA15Q9BXJ9 866 aaKnown RBP10.69□□□□□ -0.7
USP3-216ENST00000559873 PRKD2Q9BZL6 878 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 EDEM3Q9BZQ6 932 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 TRIM5Q9C035 493 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 ZNF518BQ9C0D4 1074 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 NUCKS1Q9H1E3 243 aaKnown RBP10.69□□□□□ -0.7
USP3-216ENST00000559873 RBSNQ9H1K0 784 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 ADAM7Q9H2U9 754 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 NLRC4Q9NPP4 1024 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 ASAH2Q9NR71 780 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 TMLHEQ9NVH6 421 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 CLEC1BQ9P126 229 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 MYO6Q9UM54 1294 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 NME7Q9Y5B8 376 aa10.69□□□□□ -0.7
USP3-216ENST00000559873 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.69□□□□□ -0.7
USP3-216ENST00000559873 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.68□□□□□ -0.7
USP3-216ENST00000559873 CCDC195A0A1B0GUA6 201 aa10.68□□□□□ -0.7
USP3-216ENST00000559873 H3BQ06 376 aaPredicted RBP10.68□□□□□ -0.7
USP3-216ENST00000559873 CCL16O15467 120 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms