RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 TMEM110Q86TL2 294 aa13.4□□□□□ -0.26
USP3-213ENST00000559711 RTN4RL1Q86UN2 441 aaPredicted RBP13.4□□□□□ -0.26
USP3-213ENST00000559711 OSTM1Q86WC4 334 aa13.4□□□□□ -0.26
USP3-213ENST00000559711 SLC13A5Q86YT5 568 aaPredicted RBP13.4□□□□□ -0.26
USP3-213ENST00000559711 KLHL7Q8IXQ5 586 aa13.4□□□□□ -0.26
USP3-213ENST00000559711 TNIP3Q96KP6 325 aa13.4□□□□□ -0.26
USP3-213ENST00000559711 SLC4A5Q9BY07 1137 aa13.4□□□□□ -0.26
USP3-213ENST00000559711 HESX1Q9UBX0 185 aa13.4□□□□□ -0.26
USP3-213ENST00000559711 C9IYK1 514 aa13.39□□□□□ -0.27
USP3-213ENST00000559711 BHMG1C9JSJ3 638 aaPredicted RBP13.39□□□□□ -0.27
USP3-213ENST00000559711 F8VP50 259 aa13.39□□□□□ -0.27
USP3-213ENST00000559711 GOLGA8SH3BPF8 625 aa13.39□□□□□ -0.27
USP3-213ENST00000559711 FSCN2O14926 492 aa13.39□□□□□ -0.27
USP3-213ENST00000559711 RAD51CO43502 376 aa13.39□□□□□ -0.27
USP3-213ENST00000559711 ZMYND10O75800 440 aa13.39□□□□□ -0.27
USP3-213ENST00000559711 EOMESO95936 686 aa13.39□□□□□ -0.27
USP3-213ENST00000559711 GLI1P08151 1106 aa13.39□□□□□ -0.27
USP3-213ENST00000559711 PAX3P23760 479 aa13.39□□□□□ -0.27
USP3-213ENST00000559711 CLCNKBP51801 687 aa13.39□□□□□ -0.27
USP3-213ENST00000559711 MRPS25P82663 173 aaKnown RBP13.39□□□□□ -0.27
USP3-213ENST00000559711 UPP1Q16831 310 aa13.39□□□□□ -0.27
USP3-213ENST00000559711 KATNAL2Q8IYT4 538 aa13.39□□□□□ -0.27
USP3-213ENST00000559711 TMEM86AQ8N2M4 240 aa13.39□□□□□ -0.27
USP3-213ENST00000559711 ANKRD52Q8NB46 1076 aa13.39□□□□□ -0.27
USP3-213ENST00000559711 IPO4Q8TEX9 1081 aaKnown RBP13.39□□□□□ -0.27
USP3-213ENST00000559711 SENP8Q96LD8 212 aa13.39□□□□□ -0.27
USP3-213ENST00000559711 BEGAINQ9BUH8 593 aa13.39□□□□□ -0.27
USP3-213ENST00000559711 GDF3Q9NR23 364 aa13.39□□□□□ -0.27
USP3-213ENST00000559711 FAM49BQ9NUQ9 324 aa13.39□□□□□ -0.27
USP3-213ENST00000559711 OGDHLQ9ULD0 1010 aa13.39□□□□□ -0.27
USP3-213ENST00000559711 TRIP11Q15643 1979 aa13.39□□□□□ -0.27
USP3-213ENST00000559711 GOLGA6L10A0A0M3HER8 536 aa13.38□□□□□ -0.27
USP3-213ENST00000559711 HCRTO43612 131 aa13.38□□□□□ -0.27
USP3-213ENST00000559711 SELPP16109 830 aa13.38□□□□□ -0.27
USP3-213ENST00000559711 RPL34P49207 117 aaKnown RBP13.38□□□□□ -0.27
USP3-213ENST00000559711 GRIK3Q13003 919 aa13.38□□□□□ -0.27
USP3-213ENST00000559711 MAP9Q49MG5 647 aa13.38□□□□□ -0.27
USP3-213ENST00000559711 WSCD1Q658N2 575 aa13.38□□□□□ -0.27
USP3-213ENST00000559711 PMF1Q6P1K2 205 aa13.38□□□□□ -0.27
USP3-213ENST00000559711 FAM43BQ6ZT52 329 aaPredicted RBP13.38□□□□□ -0.27
USP3-213ENST00000559711 SLC24A5Q71RS6 500 aa13.38□□□□□ -0.27
USP3-213ENST00000559711 MAATS1Q7Z4T9 603 aa13.38□□□□□ -0.27
USP3-213ENST00000559711 FAM126BQ8IXS8 530 aa13.38□□□□□ -0.27
USP3-213ENST00000559711 IFT20Q8IY31 132 aa13.38□□□□□ -0.27
USP3-213ENST00000559711 ZDHHC14Q8IZN3 488 aa13.38□□□□□ -0.27
USP3-213ENST00000559711 RNF169Q8NCN4 708 aa13.38□□□□□ -0.27
USP3-213ENST00000559711 C3orf58Q8NDZ4 430 aa13.38□□□□□ -0.27
USP3-213ENST00000559711 CCDC26Q8TAB7 109 aa13.38□□□□□ -0.27
USP3-213ENST00000559711 JOSD2Q8TAC2 188 aa13.38□□□□□ -0.27
USP3-213ENST00000559711 DDX47Q9H0S4 455 aaKnown RBP13.38□□□□□ -0.27
USP3-213ENST00000559711 CYLDQ9NQC7 956 aa13.38□□□□□ -0.27
USP3-213ENST00000559711 ST7Q9NRC1 585 aa13.38□□□□□ -0.27
USP3-213ENST00000559711 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.38□□□□□ -0.27
USP3-213ENST00000559711 PDCD11Q14690 1871 aaKnown RBP13.38□□□□□ -0.27
USP3-213ENST00000559711 E5RJQ4 531 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 TULP2O00295 520 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 HEXIM1O94992 359 aaKnown RBP13.37□□□□□ -0.27
USP3-213ENST00000559711 LHX1P48742 406 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 BCAT1P54687 386 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 SNX16P57768 344 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 PDE4CQ08493 712 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 TUSC3Q13454 348 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 BFSP2Q13515 415 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 ACAP1Q15027 740 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 MTFR1Q15390 333 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 SIX1Q15475 284 aaPredicted RBP13.37□□□□□ -0.27
USP3-213ENST00000559711 CYP1B1Q16678 543 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 DAB2IPQ5VWQ8 1189 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 LRRC8DQ7L1W4 858 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 PRELID2Q8N945 189 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 B3GALNT2Q8NCR0 500 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 EXD1Q8NHP7 514 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 LINC01599Q8WXQ3 324 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 UROC1Q96N76 676 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 DEFB118Q96PH6 123 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 HNRNPABQ99729 332 aaKnown RBP13.37□□□□□ -0.27
USP3-213ENST00000559711 LPIN3Q9BQK8 851 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 FTHL17Q9BXU8 183 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 FUT8Q9BYC5 575 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 METTL5Q9NRN9 209 aaKnown RBP13.37□□□□□ -0.27
USP3-213ENST00000559711 FAM53CQ9NYF3 392 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 CACNG4Q9UBN1 327 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 MTUS1Q9ULD2 1270 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 USTQ9Y2C2 406 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 CASTOR2A6NHX0 329 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 MAP2K7O14733 419 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 GABBR2O75899 941 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 POMCP01189 267 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 MYBL2P10244 700 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 RARAP10276 462 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 CCDC130P13994 396 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 PTPN1P18031 435 aaKnown RBP13.37□□□□□ -0.27
USP3-213ENST00000559711 PSMA2P25787 234 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 GUCY2DQ02846 1103 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 BST2Q10589 180 aaKnown RBP13.37□□□□□ -0.27
USP3-213ENST00000559711 POLNQ7Z5Q5 900 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 ADAT2Q7Z6V5 191 aaKnown RBP13.37□□□□□ -0.27
USP3-213ENST00000559711 ZDHHC17Q8IUH5 632 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 RCOR2Q8IZ40 523 aa13.37□□□□□ -0.27
USP3-213ENST00000559711 EIF1ADQ8N9N8 165 aaKnown RBP13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms