RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 ATAT1Q5SQI0 421 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 DENND5AQ6IQ26 1287 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 C17orf99Q6UX52 265 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 METTL7BQ6UX53 244 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 MAMDC4Q6UXC1 1216 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 GPR142Q7Z601 462 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 KSR1Q8IVT5 923 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 ZZZ3Q8IYH5 903 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 DTWD1Q8N5C7 304 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 GOLGA6L1Q8N7Z2 621 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 ZNF610Q8N9Z0 462 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 CYP2W1Q8TAV3 490 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 ENOX1Q8TC92 643 aaKnown RBP5.58□□□□□ -1.52
LDLR-209ENST00000558528 SEPT1Q8WYJ6 367 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 DHTKD1Q96HY7 919 aaPredicted RBP5.58□□□□□ -1.52
LDLR-209ENST00000558528 FAM167AQ96KS9 214 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 CTAGE1Q96RT6 745 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 PTPN18Q99952 460 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 PLCD4Q9BRC7 762 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 MMTAG2Q9BU76 263 aaKnown RBP5.58□□□□□ -1.52
LDLR-209ENST00000558528 C1QTNF1Q9BXJ1 281 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 TMPRSS13Q9BYE2 586 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 TRIM9Q9C026 710 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 PRDM14Q9GZV8 571 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 UNC45AQ9H3U1 944 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 ABHD16BQ9H3Z7 469 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 GSX1Q9H4S2 264 aaPredicted RBP5.58□□□□□ -1.52
LDLR-209ENST00000558528 AZI2Q9H6S1 392 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 C17orf75Q9HAS0 396 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 TXNRD2Q9NNW7 524 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 ARFGAP3Q9NP61 516 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 LARSQ9P2J5 1176 aaKnown RBP5.58□□□□□ -1.52
LDLR-209ENST00000558528 SEL1LQ9UBV2 794 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 NRBP1Q9UHY1 535 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 KLF15Q9UIH9 416 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 DBR1Q9UK59 544 aaKnown RBP5.58□□□□□ -1.52
LDLR-209ENST00000558528 MAN1B1Q9UKM7 699 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 VAV3Q9UKW4 847 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 ODF2LQ9ULJ1 636 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 SPO11Q9Y5K1 396 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 DOCK1Q14185 1865 aa5.58□□□□□ -1.52
LDLR-209ENST00000558528 CACNA1GO43497 2377 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 PHLPP2Q6ZVD8 1323 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 PP2D1A8MPX8 630 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 TM4SF5O14894 197 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 DHX15O43143 795 aaKnown RBP5.57□□□□□ -1.52
LDLR-209ENST00000558528 TIMM44O43615 452 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 GAS2O43903 313 aaKnown RBP5.57□□□□□ -1.52
LDLR-209ENST00000558528 PCDHGA12O60330 932 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 PIP5K1CO60331 668 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 RNGTTO60942 597 aaKnown RBP5.57□□□□□ -1.52
LDLR-209ENST00000558528 TBCAO75347 108 aaKnown RBP5.57□□□□□ -1.52
LDLR-209ENST00000558528 MED24O75448 989 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 ZRANB2O95218 330 aaKnown RBP eCLIP5.57□□□□□ -1.52
LDLR-209ENST00000558528 GJB1P08034 283 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 SRGAP2CP0DJJ0 459 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 SPATA31C1P0DKV0 1188 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 HSD3B1P14060 373 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 IDEP14735 1019 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 KCNA2P16389 499 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 ADORA2AP29274 412 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 PRMT2P55345 433 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 SNRPFP62306 86 aaKnown RBP5.57□□□□□ -1.52
LDLR-209ENST00000558528 MYL5Q02045 173 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 CCDC173Q0VFZ6 552 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 CUL4BQ13620 913 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 ACAP2Q15057 778 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 CRY1Q16526 586 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 FILIP1LQ4L180 1135 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 XKR3Q5GH77 459 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 SPATA1Q5VX52 437 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 OLFML2BQ68BL8 750 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 LETMD1Q6P1Q0 360 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 SLCO4C1Q6ZQN7 724 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 SEPT14Q6ZU15 432 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 ARHGAP30Q7Z6I6 1101 aaPredicted RBP5.57□□□□□ -1.52
LDLR-209ENST00000558528 FAM114A1Q8IWE2 563 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 SMYD4Q8IYR2 804 aaPredicted RBP5.57□□□□□ -1.52
LDLR-209ENST00000558528 VWA5B2Q8N398 1253 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 SMG8Q8ND04 991 aaKnown RBP5.57□□□□□ -1.52
LDLR-209ENST00000558528 DEPTORQ8TB45 409 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 PARD3BQ8TEW8 1205 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 FRS2Q8WU20 508 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 LMBR1Q8WVP7 490 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 HPS3Q969F9 1004 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 DYDC2Q96IM9 177 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 CCDC138Q96M89 665 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 CDX2Q99626 313 aaPredicted RBP5.57□□□□□ -1.52
LDLR-209ENST00000558528 TSG101Q99816 390 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 NAA15Q9BXJ9 866 aaKnown RBP5.57□□□□□ -1.52
LDLR-209ENST00000558528 RNF208Q9H0X6 261 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 BLOC1S4Q9NUP1 217 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 PANK4Q9NVE7 773 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 GFOD1Q9NXC2 390 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 RWDD2AQ9UIY3 292 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 LRCH1Q9Y2L9 728 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 Q9Y3F1 56 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 PCDHGA9Q9Y5G4 932 aaKnown RBP5.57□□□□□ -1.52
LDLR-209ENST00000558528 PCDHGA8Q9Y5G5 932 aa5.57□□□□□ -1.52
LDLR-209ENST00000558528 PCDHGA7Q9Y5G6 932 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms