RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 OR10T2Q8NGX3 314 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 IRF7Q92985 503 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 CEP63Q96MT8 703 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 MYADMQ96S97 322 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 IKZF4Q9H2S9 585 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 ATXN3LQ9H3M9 355 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 CYP3A43Q9HB55 503 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 ARMCX3Q9UH62 379 aaPredicted RBP9.25□□□□□ -0.93
USP3-208ENST00000558285 SIX4Q9UIU6 781 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 MAPK8IP1Q9UQF2 711 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 PCDHA5Q9Y5H7 936 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 NUMBLQ9Y6R0 609 aa9.25□□□□□ -0.93
USP3-208ENST00000558285 COL6A3P12111 3177 aa9.24□□□□□ -0.93
USP3-208ENST00000558285 GABRDO14764 452 aa9.24□□□□□ -0.93
USP3-208ENST00000558285 ASGR2P07307 311 aa9.24□□□□□ -0.93
USP3-208ENST00000558285 OR4Q2P0C623 313 aa9.24□□□□□ -0.93
USP3-208ENST00000558285 PFKLP17858 780 aa9.24□□□□□ -0.93
USP3-208ENST00000558285 COL9A1P20849 921 aa9.24□□□□□ -0.93
USP3-208ENST00000558285 AVPR1AP37288 418 aa9.24□□□□□ -0.93
USP3-208ENST00000558285 MAGEA9P43362 315 aa9.24□□□□□ -0.93
USP3-208ENST00000558285 CLCN5P51795 746 aa9.24□□□□□ -0.93
USP3-208ENST00000558285 CYP27A1Q02318 531 aa9.24□□□□□ -0.93
USP3-208ENST00000558285 PRKCQQ04759 706 aa9.24□□□□□ -0.93
USP3-208ENST00000558285 SNW1Q13573 536 aaKnown RBP9.24□□□□□ -0.93
USP3-208ENST00000558285 SOWAHAQ2M3V2 549 aa9.24□□□□□ -0.93
USP3-208ENST00000558285 ZACNQ401N2 412 aa9.24□□□□□ -0.93
USP3-208ENST00000558285 CCDC40Q4G0X9 1142 aa9.24□□□□□ -0.93
USP3-208ENST00000558285 TCERG1LQ5VWI1 586 aa9.24□□□□□ -0.93
USP3-208ENST00000558285 UNC93AQ86WB7 457 aa9.24□□□□□ -0.93
USP3-208ENST00000558285 SLC44A3Q8N4M1 653 aa9.24□□□□□ -0.93
USP3-208ENST00000558285 ENGASEQ8NFI3 743 aa9.24□□□□□ -0.93
USP3-208ENST00000558285 MYCBPAPQ8TBZ2 947 aa9.24□□□□□ -0.93
USP3-208ENST00000558285 DNASE1L2Q92874 299 aa9.24□□□□□ -0.93
USP3-208ENST00000558285 MCRS1Q96EZ8 462 aa9.24□□□□□ -0.93
USP3-208ENST00000558285 BORCS6Q96GS4 357 aa9.24□□□□□ -0.93
USP3-208ENST00000558285 TRMT61BQ9BVS5 477 aaKnown RBP9.24□□□□□ -0.93
USP3-208ENST00000558285 KIF9Q9HAQ2 790 aa9.24□□□□□ -0.93
USP3-208ENST00000558285 TMEM8AQ9HCN3 771 aa9.24□□□□□ -0.93
USP3-208ENST00000558285 OBP2AQ9NY56 170 aa9.24□□□□□ -0.93
USP3-208ENST00000558285 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.24□□□□□ -0.93
USP3-208ENST00000558285 SLC27A5Q9Y2P5 690 aa9.24□□□□□ -0.93
USP3-208ENST00000558285 MTCL1Q9Y4B5 1905 aaKnown RBP9.24□□□□□ -0.93
USP3-208ENST00000558285 TRIP11Q15643 1979 aa9.23□□□□□ -0.93
USP3-208ENST00000558285 FAM86C2PA6NEL3 165 aa9.23□□□□□ -0.93
USP3-208ENST00000558285 LRRIQ3A6PVS8 624 aaPredicted RBP9.23□□□□□ -0.93
USP3-208ENST00000558285 MAN2B1O00754 1011 aa9.23□□□□□ -0.93
USP3-208ENST00000558285 CCDC192P0DO97 292 aa9.23□□□□□ -0.93
USP3-208ENST00000558285 PSMC3P17980 439 aa9.23□□□□□ -0.93
USP3-208ENST00000558285 CCNE1P24864 410 aa9.23□□□□□ -0.93
USP3-208ENST00000558285 GABRR2P28476 465 aa9.23□□□□□ -0.93
USP3-208ENST00000558285 GRIK1P39086 918 aa9.23□□□□□ -0.93
USP3-208ENST00000558285 MXI1P50539 228 aa9.23□□□□□ -0.93
USP3-208ENST00000558285 MYL6P60660 151 aa9.23□□□□□ -0.93
USP3-208ENST00000558285 TPD52L1Q16890 204 aaPredicted RBP9.23□□□□□ -0.93
USP3-208ENST00000558285 CC2D1AQ6P1N0 951 aaPredicted RBP9.23□□□□□ -0.93
USP3-208ENST00000558285 SCN4BQ8IWT1 228 aa9.23□□□□□ -0.93
USP3-208ENST00000558285 EFCAB3Q8N7B9 438 aa9.23□□□□□ -0.93
USP3-208ENST00000558285 STKLD1Q8NE28 680 aa9.23□□□□□ -0.93
USP3-208ENST00000558285 PDZD8Q8NEN9 1154 aa9.23□□□□□ -0.93
USP3-208ENST00000558285 SPATA20Q8TB22 786 aa9.23□□□□□ -0.93
USP3-208ENST00000558285 CSGALNACT1Q8TDX6 532 aa9.23□□□□□ -0.93
USP3-208ENST00000558285 ING5Q8WYH8 240 aa9.23□□□□□ -0.93
USP3-208ENST00000558285 FAM81BQ96LP2 452 aa9.23□□□□□ -0.93
USP3-208ENST00000558285 SLITRK1Q96PX8 696 aa9.23□□□□□ -0.93
USP3-208ENST00000558285 MED10Q9BTT4 135 aa9.23□□□□□ -0.93
USP3-208ENST00000558285 PI4K2AQ9BTU6 479 aa9.23□□□□□ -0.93
USP3-208ENST00000558285 TASP1Q9H6P5 420 aa9.23□□□□□ -0.93
USP3-208ENST00000558285 BRD9Q9H8M2 597 aa9.23□□□□□ -0.93
USP3-208ENST00000558285 HCFC1R1Q9NWW0 138 aa9.23□□□□□ -0.93
USP3-208ENST00000558285 CDH22Q9UJ99 828 aa9.23□□□□□ -0.93
USP3-208ENST00000558285 PLXNA3P51805 1871 aa9.23□□□□□ -0.93
USP3-208ENST00000558285 ZNF263O14978 683 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 RTN3O95197 1032 aaPredicted RBP9.22□□□□□ -0.93
USP3-208ENST00000558285 C4BPAP04003 597 aaKnown RBP9.22□□□□□ -0.93
USP3-208ENST00000558285 GLULP15104 373 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 IGFBP6P24592 240 aaPredicted RBP9.22□□□□□ -0.93
USP3-208ENST00000558285 WEE1P30291 646 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 PRCPP42785 496 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 PTPN5P54829 565 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 NTHL1P78549 312 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 PPP2R5DQ14738 602 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 ARHGAP29Q52LW3 1261 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 DCAF17Q5H9S7 520 aaPredicted RBP9.22□□□□□ -0.93
USP3-208ENST00000558285 PRSS36Q5K4E3 855 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 GPR158Q5T848 1215 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 TDRD10Q5VZ19 366 aaKnown RBP9.22□□□□□ -0.93
USP3-208ENST00000558285 SV2AQ7L0J3 742 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 FRMD5Q7Z6J6 570 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 FAM114A1Q8IWE2 563 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 ADSSL1Q8N142 457 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 SIX5Q8N196 739 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 B3GALNT2Q8NCR0 500 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 FBXL13Q8NEE6 735 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 ZSWIM2Q8NEG5 633 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 ITFG1Q8TB96 612 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 ZSCAN18Q8TBC5 510 aaPredicted RBP9.22□□□□□ -0.93
USP3-208ENST00000558285 TRMT2BQ96GJ1 504 aaKnown RBP9.22□□□□□ -0.93
USP3-208ENST00000558285 SMARCD1Q96GM5 515 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 SPATA17Q96L03 361 aa9.22□□□□□ -0.93
USP3-208ENST00000558285 NIF3L1Q9GZT8 377 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms