RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 POLLQ9UGP5 575 aa7.25□□□□□ -1.25
RTF1-204ENST00000558117 GABRQQ9UN88 632 aa7.25□□□□□ -1.25
RTF1-204ENST00000558117 SIK3Q9Y2K2 1263 aa7.25□□□□□ -1.25
RTF1-204ENST00000558117 MRFAP1Q9Y605 127 aa7.25□□□□□ -1.25
RTF1-204ENST00000558117 RIF1Q5UIP0 2472 aaKnown RBP7.25□□□□□ -1.25
RTF1-204ENST00000558117 SCN9AQ15858 1988 aa7.24□□□□□ -1.25
RTF1-204ENST00000558117 IBTKQ9P2D0 1353 aaPredicted RBP7.24□□□□□ -1.25
RTF1-204ENST00000558117 ZNF318Q5VUA4 2279 aa7.24□□□□□ -1.25
RTF1-204ENST00000558117 PRR5-ARHGAP8B1AHC4 643 aa7.24□□□□□ -1.25
RTF1-204ENST00000558117 HK1P19367 917 aa7.24□□□□□ -1.25
RTF1-204ENST00000558117 ECHS1P30084 290 aa7.24□□□□□ -1.25
RTF1-204ENST00000558117 SREBF1P36956 1147 aa7.24□□□□□ -1.25
RTF1-204ENST00000558117 LRRC26Q2I0M4 334 aa7.24□□□□□ -1.25
RTF1-204ENST00000558117 MIIPQ5JXC2 388 aa7.24□□□□□ -1.25
RTF1-204ENST00000558117 MFSD14BQ5SR56 506 aa7.24□□□□□ -1.25
RTF1-204ENST00000558117 SUSD4Q5VX71 490 aa7.24□□□□□ -1.25
RTF1-204ENST00000558117 ANKS6Q68DC2 871 aa7.24□□□□□ -1.25
RTF1-204ENST00000558117 ZNF790Q6PG37 636 aa7.24□□□□□ -1.25
RTF1-204ENST00000558117 CRIP3Q6Q6R5 217 aa7.24□□□□□ -1.25
RTF1-204ENST00000558117 DOK3Q7L591 496 aa7.24□□□□□ -1.25
RTF1-204ENST00000558117 TRMT2AQ8IZ69 625 aaKnown RBP7.24□□□□□ -1.25
RTF1-204ENST00000558117 OR7D4Q8NG98 312 aa7.24□□□□□ -1.25
RTF1-204ENST00000558117 OPTNQ96CV9 577 aa7.24□□□□□ -1.25
RTF1-204ENST00000558117 MNTQ99583 582 aa7.24□□□□□ -1.25
RTF1-204ENST00000558117 PDCD2LQ9BRP1 358 aa7.24□□□□□ -1.25
RTF1-204ENST00000558117 LSM14BQ9BX40 385 aaKnown RBP7.24□□□□□ -1.25
RTF1-204ENST00000558117 XRN2Q9H0D6 950 aaKnown RBP eCLIP7.24□□□□□ -1.25
RTF1-204ENST00000558117 INTUQ9ULD6 942 aa7.24□□□□□ -1.25
RTF1-204ENST00000558117 CLCA2Q9UQC9 943 aa7.24□□□□□ -1.25
RTF1-204ENST00000558117 USP16Q9Y5T5 823 aa7.24□□□□□ -1.25
RTF1-204ENST00000558117 ZNF292O60281 2723 aa7.23□□□□□ -1.25
RTF1-204ENST00000558117 ALDH1L1O75891 902 aa7.23□□□□□ -1.25
RTF1-204ENST00000558117 NTSR2O95665 410 aa7.23□□□□□ -1.25
RTF1-204ENST00000558117 C1SP09871 688 aa7.23□□□□□ -1.25
RTF1-204ENST00000558117 PTPN7P35236 360 aa7.23□□□□□ -1.25
RTF1-204ENST00000558117 SLC6A9P48067 706 aa7.23□□□□□ -1.25
RTF1-204ENST00000558117 NEK2P51955 445 aa7.23□□□□□ -1.25
RTF1-204ENST00000558117 RABGGTBP53611 331 aa7.23□□□□□ -1.25
RTF1-204ENST00000558117 PER3P56645 1201 aa7.23□□□□□ -1.25
RTF1-204ENST00000558117 MGAT2Q10469 447 aa7.23□□□□□ -1.25
RTF1-204ENST00000558117 LSM12Q3MHD2 195 aaKnown RBP7.23□□□□□ -1.25
RTF1-204ENST00000558117 APOBEC3FQ8IUX4 373 aaKnown RBP7.23□□□□□ -1.25
RTF1-204ENST00000558117 PQLC1Q8N2U9 271 aa7.23□□□□□ -1.25
RTF1-204ENST00000558117 STON2Q8WXE9 905 aa7.23□□□□□ -1.25
RTF1-204ENST00000558117 ZNF503Q96F45 646 aa7.23□□□□□ -1.25
RTF1-204ENST00000558117 LDAHQ9H6V9 325 aa7.23□□□□□ -1.25
RTF1-204ENST00000558117 BCO1Q9HAY6 547 aa7.23□□□□□ -1.25
RTF1-204ENST00000558117 ZCCHC17Q9NP64 241 aaKnown RBP7.23□□□□□ -1.25
RTF1-204ENST00000558117 CPA4Q9UI42 421 aa7.23□□□□□ -1.25
RTF1-204ENST00000558117 SERPINB13Q9UIV8 391 aa7.23□□□□□ -1.25
RTF1-204ENST00000558117 UBN2Q6ZU65 1347 aa7.23□□□□□ -1.25
RTF1-204ENST00000558117 CACNA1HO95180 2353 aa7.22□□□□□ -1.25
RTF1-204ENST00000558117 B5MCH6 92 aa7.22□□□□□ -1.25
RTF1-204ENST00000558117 BTBD19C9JJ37 291 aa7.22□□□□□ -1.25
RTF1-204ENST00000558117 FZD7O75084 574 aa7.22□□□□□ -1.25
RTF1-204ENST00000558117 WDHD1O75717 1129 aaPredicted RBP7.22□□□□□ -1.25
RTF1-204ENST00000558117 ZRANB2O95218 330 aaKnown RBP eCLIP7.22□□□□□ -1.25
RTF1-204ENST00000558117 GDF5P43026 501 aa7.22□□□□□ -1.25
RTF1-204ENST00000558117 CSRP2Q16527 193 aa7.22□□□□□ -1.25
RTF1-204ENST00000558117 AAK1Q2M2I8 961 aa7.22□□□□□ -1.25
RTF1-204ENST00000558117 METTL24Q5JXM2 366 aa7.22□□□□□ -1.25
RTF1-204ENST00000558117 SLC10A5Q5PT55 438 aa7.22□□□□□ -1.25
RTF1-204ENST00000558117 C1QL3Q5VWW1 255 aa7.22□□□□□ -1.25
RTF1-204ENST00000558117 ZBTB46Q86UZ6 589 aa7.22□□□□□ -1.25
RTF1-204ENST00000558117 ANKRD13AQ8IZ07 590 aa7.22□□□□□ -1.25
RTF1-204ENST00000558117 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.22□□□□□ -1.25
RTF1-204ENST00000558117 FAM193BQ96PV7 902 aaPredicted RBP7.22□□□□□ -1.25
RTF1-204ENST00000558117 DEFB129Q9H1M3 183 aa7.22□□□□□ -1.25
RTF1-204ENST00000558117 ZNF703Q9H7S9 590 aaPredicted RBP7.22□□□□□ -1.25
RTF1-204ENST00000558117 OGDHLQ9ULD0 1010 aa7.22□□□□□ -1.25
RTF1-204ENST00000558117 LIMCH1Q9UPQ0 1083 aa7.22□□□□□ -1.25
RTF1-204ENST00000558117 EDNRBP24530 442 aa7.21□□□□□ -1.26
RTF1-204ENST00000558117 WASP42768 502 aa7.21□□□□□ -1.26
RTF1-204ENST00000558117 FLT3LGP49771 235 aa7.21□□□□□ -1.26
RTF1-204ENST00000558117 GRAPQ13588 217 aa7.21□□□□□ -1.26
RTF1-204ENST00000558117 TUBA3CQ13748 450 aa7.21□□□□□ -1.26
RTF1-204ENST00000558117 TUBA3EQ6PEY2 450 aa7.21□□□□□ -1.26
RTF1-204ENST00000558117 GRAPLQ8TC17 118 aaPredicted RBP7.21□□□□□ -1.26
RTF1-204ENST00000558117 CACTINQ8WUQ7 758 aaKnown RBP7.21□□□□□ -1.26
RTF1-204ENST00000558117 ANKS1AQ92625 1134 aa7.21□□□□□ -1.26
RTF1-204ENST00000558117 COA7Q96BR5 231 aa7.21□□□□□ -1.26
RTF1-204ENST00000558117 CHMP4CQ96CF2 233 aa7.21□□□□□ -1.26
RTF1-204ENST00000558117 CPEB1Q9BZB8 566 aaKnown RBP7.21□□□□□ -1.26
RTF1-204ENST00000558117 DDX60LQ5H9U9 1706 aaKnown RBP7.21□□□□□ -1.26
RTF1-204ENST00000558117 ATRNL1Q5VV63 1379 aa7.2□□□□□ -1.26
RTF1-204ENST00000558117 CHD7Q9P2D1 2997 aa7.2□□□□□ -1.26
RTF1-204ENST00000558117 COL1A1P02452 1464 aaPredicted RBP7.2□□□□□ -1.26
RTF1-204ENST00000558117 HTRA2O43464 458 aaPredicted RBP7.2□□□□□ -1.26
RTF1-204ENST00000558117 RECQL4O94761 1208 aa7.2□□□□□ -1.26
RTF1-204ENST00000558117 ENDOD1O94919 500 aa7.2□□□□□ -1.26
RTF1-204ENST00000558117 SNUPNO95149 360 aaKnown RBP7.2□□□□□ -1.26
RTF1-204ENST00000558117 FSHBP01225 129 aa7.2□□□□□ -1.26
RTF1-204ENST00000558117 U2AF1L5P0DN76 240 aaPredicted RBP7.2□□□□□ -1.26
RTF1-204ENST00000558117 GPTP24298 496 aa7.2□□□□□ -1.26
RTF1-204ENST00000558117 RECQLP46063 649 aaPredicted RBP7.2□□□□□ -1.26
RTF1-204ENST00000558117 PTTG1IPP53801 180 aa7.2□□□□□ -1.26
RTF1-204ENST00000558117 GPSM2P81274 684 aa7.2□□□□□ -1.26
RTF1-204ENST00000558117 DGCR2P98153 550 aa7.2□□□□□ -1.26
RTF1-204ENST00000558117 U2AF1Q01081 240 aaKnown RBP eCLIP7.2□□□□□ -1.26
RTF1-204ENST00000558117 TTF1Q15361 905 aaPredicted RBP7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms