RNA–Protein interactions for RNA: ENST00000558072.5

TPM1-209, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-209ENST00000558072 DPP7Q9UHL4 492 aa13.15□□□□□ -0.3
TPM1-209ENST00000558072 LCMT1Q9UIC8 334 aa13.15□□□□□ -0.3
TPM1-209ENST00000558072 NAGPAQ9UK23 515 aa13.15□□□□□ -0.3
TPM1-209ENST00000558072 STRIP2Q9ULQ0 834 aa13.15□□□□□ -0.3
TPM1-209ENST00000558072 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.15□□□□□ -0.3
TPM1-209ENST00000558072 O00370 1275 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 KRT86O43790 486 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 CALCAP01258 141 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 CYP1A1P04798 512 aaPredicted RBP13.14□□□□□ -0.31
TPM1-209ENST00000558072 CALB1P05937 261 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 H2AFZP0C0S5 128 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 FAM200BP0CF97 657 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 PNMA6AP0CW24 399 aaPredicted RBP13.14□□□□□ -0.31
TPM1-209ENST00000558072 CTSAP10619 480 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 BRD2P25440 801 aaKnown RBP13.14□□□□□ -0.31
TPM1-209ENST00000558072 LMO2P25791 158 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 MSNP26038 577 aaKnown RBP13.14□□□□□ -0.31
TPM1-209ENST00000558072 CDH5P33151 784 aaPredicted RBP13.14□□□□□ -0.31
TPM1-209ENST00000558072 MAGEA1P43355 309 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 ERVK-21P61565 698 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 SMAD3P84022 425 aaKnown RBP13.14□□□□□ -0.31
TPM1-209ENST00000558072 FMO1Q01740 532 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 BST2Q10589 180 aaKnown RBP13.14□□□□□ -0.31
TPM1-209ENST00000558072 KIF5AQ12840 1032 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 GPR17Q13304 367 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 ORC1Q13415 861 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 PSMD5Q16401 504 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 CLEC16AQ2KHT3 1053 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 LIN9Q5TKA1 542 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 TAF3Q5VWG9 929 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 E4F1Q66K89 784 aaPredicted RBP13.14□□□□□ -0.31
TPM1-209ENST00000558072 PPP2R2DQ66LE6 453 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 SLC8B1Q6J4K2 584 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 VSTM1Q6UX27 236 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 ZNF662Q6ZS27 426 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 H2AFVQ71UI9 128 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 RTL10Q7L3V2 364 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 ZDHHC17Q8IUH5 632 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 SPATA2LQ8IUW3 424 aaPredicted RBP13.14□□□□□ -0.31
TPM1-209ENST00000558072 VPS52Q8N1B4 723 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 KLHL23Q8NBE8 558 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 IPO4Q8TEX9 1081 aaKnown RBP13.14□□□□□ -0.31
TPM1-209ENST00000558072 CTNNBL1Q8WYA6 563 aaPredicted RBP13.14□□□□□ -0.31
TPM1-209ENST00000558072 RIN2Q8WYP3 895 aaPredicted RBP13.14□□□□□ -0.31
TPM1-209ENST00000558072 SMARCD1Q96GM5 515 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 HSFY1Q96LI6 401 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 SYT11Q9BT88 431 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 ALG13Q9NP73 1137 aaKnown RBP13.14□□□□□ -0.31
TPM1-209ENST00000558072 PNPLA8Q9NP80 782 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 EHD2Q9NZN4 543 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 WDR35Q9P2L0 1181 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 MTRRQ9UBK8 725 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 TSPAN16Q9UKR8 245 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 ZKSCAN5Q9Y2L8 839 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 NME7Q9Y5B8 376 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 PCDHB5Q9Y5E4 795 aa13.14□□□□□ -0.31
TPM1-209ENST00000558072 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.14□□□□□ -0.31
TPM1-209ENST00000558072 ANKRD62A6NC57 917 aa13.13□□□□□ -0.31
TPM1-209ENST00000558072 M0QYV0 167 aa13.13□□□□□ -0.31
TPM1-209ENST00000558072 DDX3XO00571 662 aaKnown RBP eCLIP13.13□□□□□ -0.31
TPM1-209ENST00000558072 TRIM66O15016 1216 aa13.13□□□□□ -0.31
TPM1-209ENST00000558072 TUBB4AP04350 444 aa13.13□□□□□ -0.31
TPM1-209ENST00000558072 MMEP08473 750 aa13.13□□□□□ -0.31
TPM1-209ENST00000558072 CPB1P15086 417 aa13.13□□□□□ -0.31
TPM1-209ENST00000558072 DESP17661 470 aa13.13□□□□□ -0.31
TPM1-209ENST00000558072 DNAJB1P25685 340 aa13.13□□□□□ -0.31
TPM1-209ENST00000558072 MAGEA11P43364 429 aa13.13□□□□□ -0.31
TPM1-209ENST00000558072 TUFMP49411 452 aaKnown RBP13.13□□□□□ -0.31
TPM1-209ENST00000558072 CENPCQ03188 943 aa13.13□□□□□ -0.31
TPM1-209ENST00000558072 C1QBPQ07021 282 aaKnown RBP13.13□□□□□ -0.31
TPM1-209ENST00000558072 SMC1AQ14683 1233 aaKnown RBP13.13□□□□□ -0.31
TPM1-209ENST00000558072 CFAP221Q4G0U5 840 aa13.13□□□□□ -0.31
TPM1-209ENST00000558072 MDH1BQ5I0G3 518 aa13.13□□□□□ -0.31
TPM1-209ENST00000558072 TMC7Q7Z402 723 aa13.13□□□□□ -0.31
TPM1-209ENST00000558072 OSTM1Q86WC4 334 aa13.13□□□□□ -0.31
TPM1-209ENST00000558072 ERICH1Q86X53 443 aa13.13□□□□□ -0.31
TPM1-209ENST00000558072 PHF13Q86YI8 300 aaPredicted RBP13.13□□□□□ -0.31
TPM1-209ENST00000558072 FBXO22Q8NEZ5 403 aa13.13□□□□□ -0.31
TPM1-209ENST00000558072 LNX1Q8TBB1 728 aaPredicted RBP13.13□□□□□ -0.31
TPM1-209ENST00000558072 ARNTL2Q8WYA1 636 aa13.13□□□□□ -0.31
TPM1-209ENST00000558072 TIFAQ96CG3 184 aa13.13□□□□□ -0.31
TPM1-209ENST00000558072 TWNKQ96RR1 684 aa13.13□□□□□ -0.31
TPM1-209ENST00000558072 LPIN3Q9BQK8 851 aa13.13□□□□□ -0.31
TPM1-209ENST00000558072 DUSP16Q9BY84 665 aa13.13□□□□□ -0.31
TPM1-209ENST00000558072 ISCUQ9H1K1 167 aa13.13□□□□□ -0.31
TPM1-209ENST00000558072 SYNCQ9H7C4 482 aa13.13□□□□□ -0.31
TPM1-209ENST00000558072 SLC28A3Q9HAS3 691 aa13.13□□□□□ -0.31
TPM1-209ENST00000558072 MRPL47Q9HD33 250 aaKnown RBP13.13□□□□□ -0.31
TPM1-209ENST00000558072 KCND1Q9NSA2 647 aa13.13□□□□□ -0.31
TPM1-209ENST00000558072 TMEM51Q9NW97 253 aa13.13□□□□□ -0.31
TPM1-209ENST00000558072 HMGXB4Q9UGU5 601 aa13.13□□□□□ -0.31
TPM1-209ENST00000558072 PCDHA13Q9Y5I0 950 aa13.13□□□□□ -0.31
TPM1-209ENST00000558072 IRAK3Q9Y616 596 aa13.13□□□□□ -0.31
TPM1-209ENST00000558072 ADGRG1Q9Y653 693 aa13.13□□□□□ -0.31
TPM1-209ENST00000558072 A0A087X0T9 212 aa13.12□□□□□ -0.31
TPM1-209ENST00000558072 XPO1O14980 1071 aaKnown RBP13.12□□□□□ -0.31
TPM1-209ENST00000558072 GRM6O15303 877 aa13.12□□□□□ -0.31
TPM1-209ENST00000558072 SART1O43290 800 aaKnown RBP13.12□□□□□ -0.31
TPM1-209ENST00000558072 TBC1D4O60343 1298 aa13.12□□□□□ -0.31
TPM1-209ENST00000558072 MICAL2O94851 1124 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms