RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 C7orf25Q9BPX7 421 aa15.69■□□□□ 0.1
SHMT2-235ENST00000557740 AGPAT3Q9NRZ7 376 aa15.69■□□□□ 0.1
SHMT2-235ENST00000557740 RBM12Q9NTZ6 932 aaKnown RBP15.69■□□□□ 0.1
SHMT2-235ENST00000557740 GTF3C4Q9UKN8 822 aa15.69■□□□□ 0.1
SHMT2-235ENST00000557740 RAB23Q9ULC3 237 aa15.69■□□□□ 0.1
SHMT2-235ENST00000557740 GABRDO14764 452 aa15.68■□□□□ 0.1
SHMT2-235ENST00000557740 POLR2DO15514 142 aaKnown RBP15.68■□□□□ 0.1
SHMT2-235ENST00000557740 TDGF1P13385 188 aa15.68■□□□□ 0.1
SHMT2-235ENST00000557740 HOXD13P35453 343 aa15.68■□□□□ 0.1
SHMT2-235ENST00000557740 CYP2J2P51589 502 aa15.68■□□□□ 0.1
SHMT2-235ENST00000557740 SATB1Q01826 763 aa15.68■□□□□ 0.1
SHMT2-235ENST00000557740 CCDC142Q17RM4 750 aa15.68■□□□□ 0.1
SHMT2-235ENST00000557740 CFAP221Q4G0U5 840 aa15.68■□□□□ 0.1
SHMT2-235ENST00000557740 TXNDC8Q6A555 127 aa15.68■□□□□ 0.1
SHMT2-235ENST00000557740 SCARA3Q6AZY7 606 aa15.68■□□□□ 0.1
SHMT2-235ENST00000557740 CC2D1AQ6P1N0 951 aaPredicted RBP15.68■□□□□ 0.1
SHMT2-235ENST00000557740 UNC13DQ70J99 1090 aa15.68■□□□□ 0.1
SHMT2-235ENST00000557740 EPM2AIP1Q7L775 607 aaPredicted RBP15.68■□□□□ 0.1
SHMT2-235ENST00000557740 DPH6Q7L8W6 267 aa15.68■□□□□ 0.1
SHMT2-235ENST00000557740 ERMP1Q7Z2K6 904 aa15.68■□□□□ 0.1
SHMT2-235ENST00000557740 MON1AQ86VX9 555 aa15.68■□□□□ 0.1
SHMT2-235ENST00000557740 NELFCDQ8IXH7 590 aa15.68■□□□□ 0.1
SHMT2-235ENST00000557740 ZNF507Q8TCN5 953 aa15.68■□□□□ 0.1
SHMT2-235ENST00000557740 USP13Q92995 863 aaPredicted RBP15.68■□□□□ 0.1
SHMT2-235ENST00000557740 TRMT2BQ96GJ1 504 aaKnown RBP15.68■□□□□ 0.1
SHMT2-235ENST00000557740 MMS19Q96T76 1030 aa15.68■□□□□ 0.1
SHMT2-235ENST00000557740 SYT15Q9BQS2 421 aa15.68■□□□□ 0.1
SHMT2-235ENST00000557740 TRPC7Q9HCX4 862 aa15.68■□□□□ 0.1
SHMT2-235ENST00000557740 TDP1Q9NUW8 608 aa15.68■□□□□ 0.1
SHMT2-235ENST00000557740 GMEB2Q9UKD1 530 aa15.68■□□□□ 0.1
SHMT2-235ENST00000557740 CCL26Q9Y258 94 aa15.68■□□□□ 0.1
SHMT2-235ENST00000557740 NUP210Q8TEM1 1887 aaPredicted RBP15.67■□□□□ 0.1
SHMT2-235ENST00000557740 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.67■□□□□ 0.1
SHMT2-235ENST00000557740 SOBPA7XYQ1 873 aa15.67■□□□□ 0.1
SHMT2-235ENST00000557740 HCRTO43612 131 aa15.67■□□□□ 0.1
SHMT2-235ENST00000557740 NOL4O94818 638 aa15.67■□□□□ 0.1
SHMT2-235ENST00000557740 TNNI1P19237 187 aa15.67■□□□□ 0.1
SHMT2-235ENST00000557740 PSMC1P62191 440 aaKnown RBP15.67■□□□□ 0.1
SHMT2-235ENST00000557740 SNRPFP62306 86 aaKnown RBP15.67■□□□□ 0.1
SHMT2-235ENST00000557740 MAPRE1Q15691 268 aaKnown RBP15.67■□□□□ 0.1
SHMT2-235ENST00000557740 Q6ZS52 159 aa15.67■□□□□ 0.1
SHMT2-235ENST00000557740 XXYLT1Q8NBI6 393 aa15.67■□□□□ 0.1
SHMT2-235ENST00000557740 RDH13Q8NBN7 331 aa15.67■□□□□ 0.1
SHMT2-235ENST00000557740 KBTBD7Q8WVZ9 684 aa15.67■□□□□ 0.1
SHMT2-235ENST00000557740 RMDN1Q96DB5 314 aa15.67■□□□□ 0.1
SHMT2-235ENST00000557740 CGRRF1Q99675 332 aa15.67■□□□□ 0.1
SHMT2-235ENST00000557740 BLZF1Q9H2G9 400 aa15.67■□□□□ 0.1
SHMT2-235ENST00000557740 GKN1Q9NS71 199 aa15.67■□□□□ 0.1
SHMT2-235ENST00000557740 CDH9Q9ULB4 789 aa15.67■□□□□ 0.1
SHMT2-235ENST00000557740 CEP250Q9BV73 2442 aa15.67■□□□□ 0.1
SHMT2-235ENST00000557740 CLIC2O15247 247 aa15.66■□□□□ 0.1
SHMT2-235ENST00000557740 TGFB1I1O43294 461 aa15.66■□□□□ 0.1
SHMT2-235ENST00000557740 TADA3O75528 432 aa15.66■□□□□ 0.1
SHMT2-235ENST00000557740 WARSP23381 471 aaKnown RBP15.66■□□□□ 0.1
SHMT2-235ENST00000557740 MAGEA11P43364 429 aa15.66■□□□□ 0.1
SHMT2-235ENST00000557740 AFMP43652 599 aa15.66■□□□□ 0.1
SHMT2-235ENST00000557740 CYP24A1Q07973 514 aa15.66■□□□□ 0.1
SHMT2-235ENST00000557740 GAS6Q14393 721 aa15.66■□□□□ 0.1
SHMT2-235ENST00000557740 ZNF268Q14587 947 aaPredicted RBP15.66■□□□□ 0.1
SHMT2-235ENST00000557740 PSMD6Q15008 389 aa15.66■□□□□ 0.1
SHMT2-235ENST00000557740 RESP18Q5W5W9 173 aa15.66■□□□□ 0.1
SHMT2-235ENST00000557740 ATL3Q6DD88 541 aa15.66■□□□□ 0.1
SHMT2-235ENST00000557740 TRAPPC11Q7Z392 1133 aa15.66■□□□□ 0.1
SHMT2-235ENST00000557740 CEP57L1Q8IYX8 460 aa15.66■□□□□ 0.1
SHMT2-235ENST00000557740 GPR161Q8N6U8 529 aaKnown RBP15.66■□□□□ 0.1
SHMT2-235ENST00000557740 FSIP1Q8NA03 581 aa15.66■□□□□ 0.1
SHMT2-235ENST00000557740 TTC16Q8NEE8 873 aa15.66■□□□□ 0.1
SHMT2-235ENST00000557740 SCFD1Q8WVM8 642 aa15.66■□□□□ 0.1
SHMT2-235ENST00000557740 MYLPFQ96A32 169 aa15.66■□□□□ 0.1
SHMT2-235ENST00000557740 CCDC127Q96BQ5 260 aa15.66■□□□□ 0.1
SHMT2-235ENST00000557740 MYRFLQ96LU7 910 aa15.66■□□□□ 0.1
SHMT2-235ENST00000557740 MAGEC2Q9UBF1 373 aaPredicted RBP15.66■□□□□ 0.1
SHMT2-235ENST00000557740 CFAP45Q9UL16 551 aa15.66■□□□□ 0.1
SHMT2-235ENST00000557740 PCDHA7Q9UN72 937 aa15.66■□□□□ 0.1
SHMT2-235ENST00000557740 TRAV19A0A0A6YYK7 116 aa15.65■□□□□ 0.1
SHMT2-235ENST00000557740 PVALEFA0A1B0GWK0 134 aa15.65■□□□□ 0.1
SHMT2-235ENST00000557740 ATP2C2O75185 946 aa15.65■□□□□ 0.1
SHMT2-235ENST00000557740 CLSTN1O94985 981 aa15.65■□□□□ 0.1
SHMT2-235ENST00000557740 PAPSS2O95340 614 aaPredicted RBP15.65■□□□□ 0.1
SHMT2-235ENST00000557740 CKMP06732 381 aa15.65■□□□□ 0.1
SHMT2-235ENST00000557740 PDGFRBP09619 1106 aa15.65■□□□□ 0.1
SHMT2-235ENST00000557740 USP17L7P0C7H9 530 aa15.65■□□□□ 0.1
SHMT2-235ENST00000557740 ANXA13P27216 316 aa15.65■□□□□ 0.1
SHMT2-235ENST00000557740 CASP1P29466 404 aa15.65■□□□□ 0.1
SHMT2-235ENST00000557740 TNNC1P63316 161 aa15.65■□□□□ 0.1
SHMT2-235ENST00000557740 AMPD2Q01433 879 aa15.65■□□□□ 0.1
SHMT2-235ENST00000557740 CYP27A1Q02318 531 aa15.65■□□□□ 0.1
SHMT2-235ENST00000557740 EHHADHQ08426 723 aa15.65■□□□□ 0.1
SHMT2-235ENST00000557740 GRSF1Q12849 480 aaKnown RBP eCLIP15.65■□□□□ 0.1
SHMT2-235ENST00000557740 RUNX3Q13761 415 aa15.65■□□□□ 0.1
SHMT2-235ENST00000557740 CCINQ13939 588 aa15.65■□□□□ 0.1
SHMT2-235ENST00000557740 KCNB1Q14721 858 aa15.65■□□□□ 0.1
SHMT2-235ENST00000557740 PDGFRLQ15198 375 aa15.65■□□□□ 0.1
SHMT2-235ENST00000557740 TRIM68Q6AZZ1 485 aa15.65■□□□□ 0.1
SHMT2-235ENST00000557740 FAM171BQ6P995 826 aa15.65■□□□□ 0.1
SHMT2-235ENST00000557740 PRR23BQ6ZRT6 265 aa15.65■□□□□ 0.1
SHMT2-235ENST00000557740 LIMS2Q7Z4I7 341 aa15.65■□□□□ 0.1
SHMT2-235ENST00000557740 SYNPOQ8N3V7 929 aa15.65■□□□□ 0.1
SHMT2-235ENST00000557740 FAM83CQ9BQN1 747 aa15.65■□□□□ 0.1
SHMT2-235ENST00000557740 SNX25Q9H3E2 840 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms