RNA–Protein interactions for RNA: ENST00000557703.5

SHMT2-234, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-234ENST00000557703 PCED1BQ96HM7 432 aa14.56□□□□□ -0.08
SHMT2-234ENST00000557703 C8orf48Q96LL4 319 aa14.56□□□□□ -0.08
SHMT2-234ENST00000557703 TMEM209Q96SK2 561 aa14.56□□□□□ -0.08
SHMT2-234ENST00000557703 HNRNPABQ99729 332 aaKnown RBP14.56□□□□□ -0.08
SHMT2-234ENST00000557703 GPR88Q9GZN0 384 aa14.56□□□□□ -0.08
SHMT2-234ENST00000557703 SDCBP2Q9H190 292 aa14.56□□□□□ -0.08
SHMT2-234ENST00000557703 PNPLA8Q9NP80 782 aa14.56□□□□□ -0.08
SHMT2-234ENST00000557703 COMMD8Q9NX08 183 aa14.56□□□□□ -0.08
SHMT2-234ENST00000557703 ABI2Q9NYB9 513 aaPredicted RBP14.56□□□□□ -0.08
SHMT2-234ENST00000557703 UXTQ9UBK9 157 aaPredicted RBP14.56□□□□□ -0.08
SHMT2-234ENST00000557703 YIPF1Q9Y548 306 aa14.56□□□□□ -0.08
SHMT2-234ENST00000557703 TTC28Q96AY4 2481 aa14.55□□□□□ -0.08
SHMT2-234ENST00000557703 LGALS16A8MUM7 142 aa14.55□□□□□ -0.08
SHMT2-234ENST00000557703 PES1O00541 588 aaKnown RBP14.55□□□□□ -0.08
SHMT2-234ENST00000557703 RFPL2O75678 378 aa14.55□□□□□ -0.08
SHMT2-234ENST00000557703 VNN2O95498 520 aa14.55□□□□□ -0.08
SHMT2-234ENST00000557703 ACAT1P24752 427 aaKnown RBP14.55□□□□□ -0.08
SHMT2-234ENST00000557703 PPP3CCP48454 512 aa14.55□□□□□ -0.08
SHMT2-234ENST00000557703 COPB1P53618 953 aaKnown RBP14.55□□□□□ -0.08
SHMT2-234ENST00000557703 RBM10P98175 930 aaKnown RBP14.55□□□□□ -0.08
SHMT2-234ENST00000557703 TFF2Q03403 129 aa14.55□□□□□ -0.08
SHMT2-234ENST00000557703 TWF1Q12792 350 aa14.55□□□□□ -0.08
SHMT2-234ENST00000557703 PABPC1LQ4VXU2 614 aaKnown RBP14.55□□□□□ -0.08
SHMT2-234ENST00000557703 OTOP3Q7RTS5 596 aa14.55□□□□□ -0.08
SHMT2-234ENST00000557703 ADHFE1Q8IWW8 467 aa14.55□□□□□ -0.08
SHMT2-234ENST00000557703 UBR7Q8N806 425 aa14.55□□□□□ -0.08
SHMT2-234ENST00000557703 WHAMMQ8TF30 809 aa14.55□□□□□ -0.08
SHMT2-234ENST00000557703 NXPE3Q969Y0 559 aa14.55□□□□□ -0.08
SHMT2-234ENST00000557703 ACSF2Q96CM8 615 aaPredicted RBP14.55□□□□□ -0.08
SHMT2-234ENST00000557703 TRMT2BQ96GJ1 504 aaKnown RBP14.55□□□□□ -0.08
SHMT2-234ENST00000557703 SMARCD1Q96GM5 515 aa14.55□□□□□ -0.08
SHMT2-234ENST00000557703 PGLYRP2Q96PD5 576 aa14.55□□□□□ -0.08
SHMT2-234ENST00000557703 ERGIC2Q96RQ1 377 aa14.55□□□□□ -0.08
SHMT2-234ENST00000557703 UBXN6Q9BZV1 441 aa14.55□□□□□ -0.08
SHMT2-234ENST00000557703 HSD3B7Q9H2F3 369 aa14.55□□□□□ -0.08
SHMT2-234ENST00000557703 TSPY26PQ9H489 355 aa14.55□□□□□ -0.08
SHMT2-234ENST00000557703 CBX8Q9HC52 389 aa14.55□□□□□ -0.08
SHMT2-234ENST00000557703 CEP72Q9P209 647 aa14.55□□□□□ -0.08
SHMT2-234ENST00000557703 CLUHO75153 1309 aa14.55□□□□□ -0.08
SHMT2-234ENST00000557703 VDRP11473 427 aa14.54□□□□□ -0.08
SHMT2-234ENST00000557703 ANXA13P27216 316 aa14.54□□□□□ -0.08
SHMT2-234ENST00000557703 BPIFB4P59827 614 aa14.54□□□□□ -0.08
SHMT2-234ENST00000557703 CYP27A1Q02318 531 aa14.54□□□□□ -0.08
SHMT2-234ENST00000557703 TAF12Q16514 161 aa14.54□□□□□ -0.08
SHMT2-234ENST00000557703 MDH1BQ5I0G3 518 aa14.54□□□□□ -0.08
SHMT2-234ENST00000557703 ARHGAP17Q68EM7 881 aa14.54□□□□□ -0.08
SHMT2-234ENST00000557703 PHLDB3Q6NSJ2 640 aa14.54□□□□□ -0.08
SHMT2-234ENST00000557703 ACOT1Q86TX2 421 aa14.54□□□□□ -0.08
SHMT2-234ENST00000557703 C12orf76Q8N812 135 aaPredicted RBP14.54□□□□□ -0.08
SHMT2-234ENST00000557703 MYLPFQ96A32 169 aa14.54□□□□□ -0.08
SHMT2-234ENST00000557703 IQCDQ96DY2 449 aa14.54□□□□□ -0.08
SHMT2-234ENST00000557703 CYFIP2Q96F07 1278 aa14.54□□□□□ -0.08
SHMT2-234ENST00000557703 MYRFLQ96LU7 910 aa14.54□□□□□ -0.08
SHMT2-234ENST00000557703 HEXIM2Q96MH2 286 aaKnown RBP14.54□□□□□ -0.08
SHMT2-234ENST00000557703 SEPT5Q99719 369 aaPredicted RBP14.54□□□□□ -0.08
SHMT2-234ENST00000557703 CRACR2AQ9BSW2 395 aa14.54□□□□□ -0.08
SHMT2-234ENST00000557703 VPS16Q9H269 839 aa14.54□□□□□ -0.08
SHMT2-234ENST00000557703 CSNK1G1Q9HCP0 422 aa14.54□□□□□ -0.08
SHMT2-234ENST00000557703 UBE2TQ9NPD8 197 aaPredicted RBP14.54□□□□□ -0.08
SHMT2-234ENST00000557703 PRDM6Q9NQX0 595 aa14.54□□□□□ -0.08
SHMT2-234ENST00000557703 ASAH2Q9NR71 780 aa14.54□□□□□ -0.08
SHMT2-234ENST00000557703 TMLHEQ9NVH6 421 aa14.54□□□□□ -0.08
SHMT2-234ENST00000557703 GDE1Q9NZC3 331 aa14.54□□□□□ -0.08
SHMT2-234ENST00000557703 SLC27A5Q9Y2P5 690 aa14.54□□□□□ -0.08
SHMT2-234ENST00000557703 A0A0C4DFX4 3053 aa14.54□□□□□ -0.08
SHMT2-234ENST00000557703 CCL16O15467 120 aa14.53□□□□□ -0.08
SHMT2-234ENST00000557703 ATP2C2O75185 946 aa14.53□□□□□ -0.08
SHMT2-234ENST00000557703 LRRN2O75325 713 aa14.53□□□□□ -0.08
SHMT2-234ENST00000557703 RTN3O95197 1032 aaPredicted RBP14.53□□□□□ -0.08
SHMT2-234ENST00000557703 TPM3P06753 285 aa14.53□□□□□ -0.08
SHMT2-234ENST00000557703 PFKLP17858 780 aa14.53□□□□□ -0.08
SHMT2-234ENST00000557703 CD58P19256 250 aa14.53□□□□□ -0.08
SHMT2-234ENST00000557703 SLC9A1P19634 815 aa14.53□□□□□ -0.08
SHMT2-234ENST00000557703 ACO1P21399 889 aaKnown RBP14.53□□□□□ -0.08
SHMT2-234ENST00000557703 BDNFP23560 247 aa14.53□□□□□ -0.08
SHMT2-234ENST00000557703 CYP2F1P24903 491 aa14.53□□□□□ -0.08
SHMT2-234ENST00000557703 CDC25CP30307 473 aa14.53□□□□□ -0.08
SHMT2-234ENST00000557703 GRIK1P39086 918 aa14.53□□□□□ -0.08
SHMT2-234ENST00000557703 RAP1GAPP47736 663 aa14.53□□□□□ -0.08
SHMT2-234ENST00000557703 RAD23BP54727 409 aa14.53□□□□□ -0.08
SHMT2-234ENST00000557703 PSMC1P62191 440 aaKnown RBP14.53□□□□□ -0.08
SHMT2-234ENST00000557703 SGO2Q562F6 1265 aa14.53□□□□□ -0.08
SHMT2-234ENST00000557703 HSP90AA4PQ58FG1 418 aa14.53□□□□□ -0.08
SHMT2-234ENST00000557703 KLHDC7AQ5VTJ3 777 aa14.53□□□□□ -0.08
SHMT2-234ENST00000557703 APTXQ7Z2E3 356 aaKnown RBP14.53□□□□□ -0.08
SHMT2-234ENST00000557703 DNAJB7Q7Z6W7 309 aaPredicted RBP14.53□□□□□ -0.08
SHMT2-234ENST00000557703 SLC4A11Q8NBS3 891 aa14.53□□□□□ -0.08
SHMT2-234ENST00000557703 OVCA2Q8WZ82 227 aa14.53□□□□□ -0.08
SHMT2-234ENST00000557703 DMAP1Q9NPF5 467 aaPredicted RBP14.53□□□□□ -0.08
SHMT2-234ENST00000557703 TAB2Q9NYJ8 693 aa14.53□□□□□ -0.08
SHMT2-234ENST00000557703 UNC80Q8N2C7 3258 aa14.53□□□□□ -0.08
SHMT2-234ENST00000557703 A0A1W2PQC6 194 aa14.52□□□□□ -0.09
SHMT2-234ENST00000557703 RHOP08100 348 aa14.52□□□□□ -0.09
SHMT2-234ENST00000557703 FAM200BP0CF97 657 aa14.52□□□□□ -0.09
SHMT2-234ENST00000557703 UCHL3P15374 230 aa14.52□□□□□ -0.09
SHMT2-234ENST00000557703 FSHRP23945 695 aa14.52□□□□□ -0.09
SHMT2-234ENST00000557703 DDX6P26196 483 aaKnown RBP eCLIP14.52□□□□□ -0.09
SHMT2-234ENST00000557703 WEE1P30291 646 aa14.52□□□□□ -0.09
SHMT2-234ENST00000557703 UBXN1Q04323 297 aa14.52□□□□□ -0.09
SHMT2-234ENST00000557703 LRMPQ12912 555 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms