RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 TSSK1BQ9BXA7 367 aa17.09■□□□□ 0.33
SHMT2-232ENST00000557487 IMPG2Q9BZV3 1241 aa17.09■□□□□ 0.33
SHMT2-232ENST00000557487 APOBEC3GQ9HC16 384 aaKnown RBP17.09■□□□□ 0.33
SHMT2-232ENST00000557487 KLF11O14901 512 aa17.09■□□□□ 0.33
SHMT2-232ENST00000557487 FAM155BO75949 473 aa17.09■□□□□ 0.33
SHMT2-232ENST00000557487 ATP5BP06576 529 aaKnown RBP17.09■□□□□ 0.33
SHMT2-232ENST00000557487 KRT7P08729 469 aa17.09■□□□□ 0.33
SHMT2-232ENST00000557487 GSTA2P09210 222 aa17.09■□□□□ 0.33
SHMT2-232ENST00000557487 CTCFP49711 727 aaPredicted RBP17.09■□□□□ 0.33
SHMT2-232ENST00000557487 RPS6P62753 249 aaKnown RBP17.09■□□□□ 0.33
SHMT2-232ENST00000557487 NOP14P78316 857 aaKnown RBP17.09■□□□□ 0.33
SHMT2-232ENST00000557487 CDK16Q00536 496 aa17.09■□□□□ 0.33
SHMT2-232ENST00000557487 PLCB3Q01970 1234 aa17.09■□□□□ 0.33
SHMT2-232ENST00000557487 SPDYE2Q495Y8 402 aa17.09■□□□□ 0.33
SHMT2-232ENST00000557487 CCDC62Q6P9F0 684 aa17.09■□□□□ 0.33
SHMT2-232ENST00000557487 FAM83AQ86UY5 434 aa17.09■□□□□ 0.33
SHMT2-232ENST00000557487 TRIM42Q8IWZ5 723 aa17.09■□□□□ 0.33
SHMT2-232ENST00000557487 GPC2Q8N158 579 aa17.09■□□□□ 0.33
SHMT2-232ENST00000557487 PDIK1LQ8N165 341 aa17.09■□□□□ 0.33
SHMT2-232ENST00000557487 UBR7Q8N806 425 aa17.09■□□□□ 0.33
SHMT2-232ENST00000557487 DDX51Q8N8A6 666 aaKnown RBP eCLIP17.09■□□□□ 0.33
SHMT2-232ENST00000557487 CEP120Q8N960 986 aa17.09■□□□□ 0.33
SHMT2-232ENST00000557487 TCP10LQ8TDR4 215 aa17.09■□□□□ 0.33
SHMT2-232ENST00000557487 APBB2Q92870 758 aa17.09■□□□□ 0.33
SHMT2-232ENST00000557487 CYTH2Q99418 400 aa17.09■□□□□ 0.33
SHMT2-232ENST00000557487 CADM1Q9BY67 442 aaKnown RBP17.09■□□□□ 0.33
SHMT2-232ENST00000557487 SYNCQ9H7C4 482 aa17.09■□□□□ 0.33
SHMT2-232ENST00000557487 GABBR1Q9UBS5 961 aa17.09■□□□□ 0.33
SHMT2-232ENST00000557487 STRIP2Q9ULQ0 834 aa17.09■□□□□ 0.33
SHMT2-232ENST00000557487 CNTNAP1P78357 1384 aa17.09■□□□□ 0.33
SHMT2-232ENST00000557487 GSC2O15499 205 aa17.08■□□□□ 0.33
SHMT2-232ENST00000557487 ENTPD5O75356 428 aa17.08■□□□□ 0.33
SHMT2-232ENST00000557487 DDNO94850 711 aaPredicted RBP17.08■□□□□ 0.33
SHMT2-232ENST00000557487 MYCLP12524 364 aaPredicted RBP17.08■□□□□ 0.33
SHMT2-232ENST00000557487 ETS1P14921 441 aa17.08■□□□□ 0.33
SHMT2-232ENST00000557487 CCND2P30279 289 aa17.08■□□□□ 0.33
SHMT2-232ENST00000557487 CDH5P33151 784 aaPredicted RBP17.08■□□□□ 0.33
SHMT2-232ENST00000557487 RPL7AP62424 266 aaKnown RBP17.08■□□□□ 0.33
SHMT2-232ENST00000557487 MAP3K10Q02779 954 aa17.08■□□□□ 0.33
SHMT2-232ENST00000557487 DLGAP5Q15398 846 aa17.08■□□□□ 0.33
SHMT2-232ENST00000557487 NBPF20Q3BBV1 942 aa17.08■□□□□ 0.33
SHMT2-232ENST00000557487 ATP13A4Q4VNC1 1196 aa17.08■□□□□ 0.33
SHMT2-232ENST00000557487 PPP1R15BQ5SWA1 713 aa17.08■□□□□ 0.33
SHMT2-232ENST00000557487 ARHGEF16Q5VV41 709 aa17.08■□□□□ 0.33
SHMT2-232ENST00000557487 C3orf62Q6ZUJ4 267 aa17.08■□□□□ 0.33
SHMT2-232ENST00000557487 PAXIP1Q6ZW49 1069 aaPredicted RBP17.08■□□□□ 0.33
SHMT2-232ENST00000557487 PALM2Q8IXS6 379 aa17.08■□□□□ 0.33
SHMT2-232ENST00000557487 THNSL1Q8IYQ7 743 aa17.08■□□□□ 0.33
SHMT2-232ENST00000557487 TTC8Q8TAM2 541 aa17.08■□□□□ 0.33
SHMT2-232ENST00000557487 DCAKDQ8WVC6 231 aa17.08■□□□□ 0.33
SHMT2-232ENST00000557487 SKA1Q96BD8 255 aa17.08■□□□□ 0.33
SHMT2-232ENST00000557487 MIPEPQ99797 713 aa17.08■□□□□ 0.33
SHMT2-232ENST00000557487 POLR3FQ9H1D9 316 aaPredicted RBP17.08■□□□□ 0.33
SHMT2-232ENST00000557487 XPNPEP1Q9NQW7 623 aa17.08■□□□□ 0.33
SHMT2-232ENST00000557487 GINM1Q9NU53 330 aa17.08■□□□□ 0.33
SHMT2-232ENST00000557487 RBAKQ9NYW8 714 aaPredicted RBP17.08■□□□□ 0.33
SHMT2-232ENST00000557487 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.08■□□□□ 0.33
SHMT2-232ENST00000557487 WDR90Q96KV7 1748 aa17.08■□□□□ 0.32
SHMT2-232ENST00000557487 GYG2O15488 501 aa17.08■□□□□ 0.32
SHMT2-232ENST00000557487 IFNB1P01574 187 aa17.08■□□□□ 0.32
SHMT2-232ENST00000557487 MT-ND3P03897 115 aa17.08■□□□□ 0.32
SHMT2-232ENST00000557487 CFHP08603 1231 aa17.08■□□□□ 0.32
SHMT2-232ENST00000557487 FGFR1P11362 822 aa17.08■□□□□ 0.32
SHMT2-232ENST00000557487 EIF4BP23588 611 aaKnown RBP17.08■□□□□ 0.32
SHMT2-232ENST00000557487 SLC34A1Q06495 639 aa17.08■□□□□ 0.32
SHMT2-232ENST00000557487 CDK18Q07002 472 aa17.08■□□□□ 0.32
SHMT2-232ENST00000557487 ZNF252P-AS1Q0IIN9 211 aa17.08■□□□□ 0.32
SHMT2-232ENST00000557487 GRM1Q13255 1194 aa17.08■□□□□ 0.32
SHMT2-232ENST00000557487 TFDP1Q14186 410 aa17.08■□□□□ 0.32
SHMT2-232ENST00000557487 TAZQ16635 292 aa17.08■□□□□ 0.32
SHMT2-232ENST00000557487 PLEKHG4Q58EX7 1191 aa17.08■□□□□ 0.32
SHMT2-232ENST00000557487 SPOPLQ6IQ16 392 aa17.08■□□□□ 0.32
SHMT2-232ENST00000557487 BBS12Q6ZW61 710 aa17.08■□□□□ 0.32
SHMT2-232ENST00000557487 PPFIBP2Q8ND30 876 aa17.08■□□□□ 0.32
SHMT2-232ENST00000557487 CPT1BQ92523 772 aa17.08■□□□□ 0.32
SHMT2-232ENST00000557487 MCUR1Q96AQ8 359 aa17.08■□□□□ 0.32
SHMT2-232ENST00000557487 ELMO3Q96BJ8 720 aa17.08■□□□□ 0.32
SHMT2-232ENST00000557487 FAM136AQ96C01 138 aa17.08■□□□□ 0.32
SHMT2-232ENST00000557487 CDHR1Q96JP9 859 aa17.08■□□□□ 0.32
SHMT2-232ENST00000557487 TMEM121Q9BTD3 319 aa17.08■□□□□ 0.32
SHMT2-232ENST00000557487 NMRK2Q9NPI5 230 aa17.08■□□□□ 0.32
SHMT2-232ENST00000557487 CYP26B1Q9NR63 512 aa17.08■□□□□ 0.32
SHMT2-232ENST00000557487 KLHL11Q9NVR0 708 aa17.08■□□□□ 0.32
SHMT2-232ENST00000557487 HEY2Q9UBP5 337 aa17.08■□□□□ 0.32
SHMT2-232ENST00000557487 ARID2Q68CP9 1835 aa17.07■□□□□ 0.32
SHMT2-232ENST00000557487 DPPA5A6NC42 116 aa17.07■□□□□ 0.32
SHMT2-232ENST00000557487 YDJCA8MPS7 323 aa17.07■□□□□ 0.32
SHMT2-232ENST00000557487 ZNF862O60290 1169 aa17.07■□□□□ 0.32
SHMT2-232ENST00000557487 NLRP11P59045 1033 aaKnown RBP17.07■□□□□ 0.32
SHMT2-232ENST00000557487 MXRA7P84157 204 aa17.07■□□□□ 0.32
SHMT2-232ENST00000557487 SLC18A2Q05940 514 aa17.07■□□□□ 0.32
SHMT2-232ENST00000557487 CXCL9Q07325 125 aa17.07■□□□□ 0.32
SHMT2-232ENST00000557487 HADHQ16836 314 aaKnown RBP17.07■□□□□ 0.32
SHMT2-232ENST00000557487 VPS52Q8N1B4 723 aa17.07■□□□□ 0.32
SHMT2-232ENST00000557487 FNIP1Q8TF40 1166 aa17.07■□□□□ 0.32
SHMT2-232ENST00000557487 RSAD2Q8WXG1 361 aa17.07■□□□□ 0.32
SHMT2-232ENST00000557487 APOPT1Q96IL0 206 aa17.07■□□□□ 0.32
SHMT2-232ENST00000557487 MCEEQ96PE7 176 aa17.07■□□□□ 0.32
SHMT2-232ENST00000557487 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.07■□□□□ 0.326e-6■■□□□ 12.1
SHMT2-232ENST00000557487 NMRK1Q9NWW6 199 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms