RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	ATP6V1C1	P21283	382 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	HADHA	P40939	763 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	MAPK10	P53779	464 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	GSC	P56915	257 aa	Predicted RBP	5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	MORF4L2	Q15014	288 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	DCAF12L1	Q5VU92	463 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	CC2D2B	Q6DHV5	1058 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	IYD	Q6PHW0	289 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	CRELD2	Q6UXH1	353 aa	Predicted RBP	5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	IRF2BP2	Q7Z5L9	587 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	NET1	Q7Z628	596 aa	Predicted RBP	5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	MCOLN2	Q8IZK6	566 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	SIX6OS1	Q8N1H7	587 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	GABPB2	Q8TAK5	448 aa	Predicted RBP	5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	USP33	Q8TEY7	942 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	INPP5D	Q92835	1189 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	APOPT1	Q96IL0	206 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	AGBL1	Q96MI9	1066 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	CATSPER2	Q96P56	530 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	MXRA8	Q9BRK3	442 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	SIKE1	Q9BRV8	207 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	STAU2	Q9NUL3	570 aa	Known RBP eCLIP	5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	HACD3	Q9P035	362 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	KCNG1	Q9UIX4	513 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	DNPEP	Q9ULA0	475 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	WDR27	A2RRH5	827 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	KCNA4	P22459	653 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	OCA2	Q04671	838 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	NCOA4	Q13772	614 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	NFIX	Q14938	502 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	EMC2	Q15006	297 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	FUT11	Q495W5	492 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	IL31	Q6EBC2	164 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	ARHGAP27	Q6ZUM4	889 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	ZNF720	Q7Z2F6	126 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	ZCCHC9	Q8N567	271 aa	Known RBP	5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	POU5F2	Q8N7G0	328 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	PBXIP1	Q96AQ6	731 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	FAM149B1	Q96BN6	582 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	ALKBH8	Q96BT7	664 aa	Known RBP	5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	TBC1D10A	Q9BXI6	508 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	C12orf65	Q9H3J6	166 aa	Known RBP	5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	TBC1D22B	Q9NU19	505 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	PRR12	Q9ULL5	1215 aa		5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	FNDC3A	Q9Y2H6	1198 aa	Known RBP	5.2	□□□□□ -1.58
SYNE2-223	ENST00000557005	DNALI1	O14645	258 aa	Predicted RBP	5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	TLR2	O60603	784 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	BBOX1	O75936	387 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	ALAD	P13716	330 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	FECH	P22830	423 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	MAP4	P27816	1152 aa	Known RBP	5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	SMARCA1	P28370	1054 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	SSTR1	P30872	391 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	BCAR1	P56945	870 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	JAM2	P57087	298 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	FAAP100	Q0VG06	881 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	FUT2	Q10981	343 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	XRCC4	Q13426	336 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	TTC27	Q6P3X3	843 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	KLC3	Q6P597	504 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	DEFB107A	Q8IZN7	70 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	ZNF786	Q8N393	782 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	CYP2W1	Q8TAV3	490 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	SH3TC2	Q8TF17	1288 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	SHISA4	Q96DD7	197 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	CMTM5	Q96DZ9	223 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	EML4	Q9HC35	981 aa	Known RBP	5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	SAE1	Q9UBE0	346 aa	Predicted RBP	5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	PCYOX1	Q9UHG3	505 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	USP20	Q9Y2K6	914 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	NDUFB10	O96000	172 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	NUDT17	P0C025	328 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	HSPA8	P11142	646 aa	Known RBP	5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	ABCD1	P33897	745 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	PTGIR	P43119	386 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	CYP24A1	Q07973	514 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	ATP1A4	Q13733	1029 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	GRIK5	Q16478	980 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	TFDP3	Q5H9I0	405 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	RBM44	Q6ZP01	1051 aa	Known RBP	5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	RIPOR1	Q6ZS17	1223 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	GPR141	Q7Z602	305 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	ECHDC2	Q86YB7	292 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	RNF169	Q8NCN4	708 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	UCMA	Q8WVF2	138 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	SPOCK2	Q92563	424 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	NRBF2	Q96F24	287 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	CEP19	Q96LK0	163 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	MRPS26	Q9BYN8	205 aa	Known RBP	5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	ING2	Q9H160	280 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	GTF3C4	Q9UKN8	822 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	POLI	Q9UNA4	740 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	P4HA2	O15460	535 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	RPS6KA4	O75676	772 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	GPD1	P21695	349 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	SLC25A3	Q00325	362 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	CCDC15	Q0P6D6	951 aa		5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	SF3B3	Q15393	1217 aa	Known RBP	5.19	□□□□□ -1.58
SYNE2-223	ENST00000557005	ANO4	Q32M45	955 aa		5.19	□□□□□ -1.58

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