RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 NR2E1Q9Y466 385 aa12.2□□□□□ -0.46
CCDC88C-212ENST00000556767 ATP8B3O60423 1300 aa12.19□□□□□ -0.46
CCDC88C-212ENST00000556767 SMTNL1A8MU46 457 aa12.19□□□□□ -0.46
CCDC88C-212ENST00000556767 CLDN5O00501 218 aa12.19□□□□□ -0.46
CCDC88C-212ENST00000556767 CILPO75339 1184 aa12.19□□□□□ -0.46
CCDC88C-212ENST00000556767 RHOP08100 348 aa12.19□□□□□ -0.46
CCDC88C-212ENST00000556767 POU2F2P09086 479 aa12.19□□□□□ -0.46
CCDC88C-212ENST00000556767 ATF6P18850 670 aa12.19□□□□□ -0.46
CCDC88C-212ENST00000556767 ANXA13P27216 316 aa12.19□□□□□ -0.46
CCDC88C-212ENST00000556767 ZP2Q05996 745 aa12.19□□□□□ -0.46
CCDC88C-212ENST00000556767 INCA1Q0VD86 236 aa12.19□□□□□ -0.46
CCDC88C-212ENST00000556767 DDR2Q16832 855 aa12.19□□□□□ -0.46
CCDC88C-212ENST00000556767 CFAP221Q4G0U5 840 aa12.19□□□□□ -0.46
CCDC88C-212ENST00000556767 CDKAL1Q5VV42 579 aa12.19□□□□□ -0.46
CCDC88C-212ENST00000556767 PDZD4Q76G19 769 aaPredicted RBP12.19□□□□□ -0.46
CCDC88C-212ENST00000556767 RRAGAQ7L523 313 aa12.19□□□□□ -0.46
CCDC88C-212ENST00000556767 OTOP3Q7RTS5 596 aa12.19□□□□□ -0.46
CCDC88C-212ENST00000556767 DNAJB7Q7Z6W7 309 aaPredicted RBP12.19□□□□□ -0.46
CCDC88C-212ENST00000556767 HS6ST3Q8IZP7 471 aa12.19□□□□□ -0.46
CCDC88C-212ENST00000556767 TDRD5Q8NAT2 981 aaKnown RBP12.19□□□□□ -0.46
CCDC88C-212ENST00000556767 LMO3Q8TAP4 145 aa12.19□□□□□ -0.46
CCDC88C-212ENST00000556767 ACSF2Q96CM8 615 aaPredicted RBP12.19□□□□□ -0.46
CCDC88C-212ENST00000556767 FUBP3Q96I24 572 aaKnown RBP eCLIP12.19□□□□□ -0.46
CCDC88C-212ENST00000556767 FAXDC2Q96IV6 333 aa12.19□□□□□ -0.46
CCDC88C-212ENST00000556767 HEXIM2Q96MH2 286 aaKnown RBP12.19□□□□□ -0.46
CCDC88C-212ENST00000556767 TWNKQ96RR1 684 aa12.19□□□□□ -0.46
CCDC88C-212ENST00000556767 B3GNT5Q9BYG0 378 aa12.19□□□□□ -0.46
CCDC88C-212ENST00000556767 VPS16Q9H269 839 aa12.19□□□□□ -0.46
CCDC88C-212ENST00000556767 ABCB6Q9NP58 842 aa12.19□□□□□ -0.46
CCDC88C-212ENST00000556767 ASAH2Q9NR71 780 aa12.19□□□□□ -0.46
CCDC88C-212ENST00000556767 FAM49BQ9NUQ9 324 aa12.19□□□□□ -0.46
CCDC88C-212ENST00000556767 MAGED2Q9UNF1 606 aaPredicted RBP12.19□□□□□ -0.46
CCDC88C-212ENST00000556767 MRPS23Q9Y3D9 190 aaKnown RBP12.19□□□□□ -0.46
CCDC88C-212ENST00000556767 CCDC130P13994 396 aa12.18□□□□□ -0.46
CCDC88C-212ENST00000556767 SLC9A1P19634 815 aa12.18□□□□□ -0.46
CCDC88C-212ENST00000556767 ADORA2BP29275 332 aa12.18□□□□□ -0.46
CCDC88C-212ENST00000556767 NCAPHQ15003 741 aa12.18□□□□□ -0.46
CCDC88C-212ENST00000556767 KRT31Q15323 416 aa12.18□□□□□ -0.46
CCDC88C-212ENST00000556767 EXOC3L4Q17RC7 722 aa12.18□□□□□ -0.46
CCDC88C-212ENST00000556767 ARHGEF19Q8IW93 802 aa12.18□□□□□ -0.46
CCDC88C-212ENST00000556767 GJD3Q8N144 294 aa12.18□□□□□ -0.46
CCDC88C-212ENST00000556767 CRYBG2Q8N1P7 616 aa12.18□□□□□ -0.46
CCDC88C-212ENST00000556767 C12orf29Q8N999 325 aa12.18□□□□□ -0.46
CCDC88C-212ENST00000556767 STKLD1Q8NE28 680 aa12.18□□□□□ -0.46
CCDC88C-212ENST00000556767 ING5Q8WYH8 240 aa12.18□□□□□ -0.46
CCDC88C-212ENST00000556767 KAT5Q92993 513 aa12.18□□□□□ -0.46
CCDC88C-212ENST00000556767 BPIFA3Q9BQP9 254 aa12.18□□□□□ -0.46
CCDC88C-212ENST00000556767 FUCA2Q9BTY2 467 aa12.18□□□□□ -0.46
CCDC88C-212ENST00000556767 ZNF518BQ9C0D4 1074 aa12.18□□□□□ -0.46
CCDC88C-212ENST00000556767 ELOVL4Q9GZR5 314 aa12.18□□□□□ -0.46
CCDC88C-212ENST00000556767 UBE2TQ9NPD8 197 aaPredicted RBP12.18□□□□□ -0.46
CCDC88C-212ENST00000556767 ASB3Q9Y575 518 aa12.18□□□□□ -0.46
CCDC88C-212ENST00000556767 PCDHB4Q9Y5E5 795 aa12.18□□□□□ -0.46
CCDC88C-212ENST00000556767 GTPBP10A4D1E9 387 aaKnown RBP12.17□□□□□ -0.46
CCDC88C-212ENST00000556767 C2CD4DB7Z1M9 353 aa12.17□□□□□ -0.46
CCDC88C-212ENST00000556767 ZNF197O14709 1029 aa12.17□□□□□ -0.46
CCDC88C-212ENST00000556767 TRIM66O15016 1216 aa12.17□□□□□ -0.46
CCDC88C-212ENST00000556767 PAPLNO95428 1278 aa12.17□□□□□ -0.46
CCDC88C-212ENST00000556767 CD19P15391 556 aa12.17□□□□□ -0.46
CCDC88C-212ENST00000556767 GJA1P17302 382 aa12.17□□□□□ -0.46
CCDC88C-212ENST00000556767 MAGEA11P43364 429 aa12.17□□□□□ -0.46
CCDC88C-212ENST00000556767 MIIPQ5JXC2 388 aa12.17□□□□□ -0.46
CCDC88C-212ENST00000556767 FKBP15Q5T1M5 1219 aa12.17□□□□□ -0.46
CCDC88C-212ENST00000556767 PHLDB3Q6NSJ2 640 aa12.17□□□□□ -0.46
CCDC88C-212ENST00000556767 TRIM65Q6PJ69 517 aa12.17□□□□□ -0.46
CCDC88C-212ENST00000556767 TMEM270Q6UE05 265 aa12.17□□□□□ -0.46
CCDC88C-212ENST00000556767 VSTM1Q6UX27 236 aa12.17□□□□□ -0.46
CCDC88C-212ENST00000556767 FAM35AQ86V20 835 aa12.17□□□□□ -0.46
CCDC88C-212ENST00000556767 DHX40Q8IX18 779 aaKnown RBP12.17□□□□□ -0.46
CCDC88C-212ENST00000556767 LEMD2Q8NC56 503 aa12.17□□□□□ -0.46
CCDC88C-212ENST00000556767 ITFG1Q8TB96 612 aa12.17□□□□□ -0.46
CCDC88C-212ENST00000556767 SLC2A14Q8TDB8 520 aa12.17□□□□□ -0.46
CCDC88C-212ENST00000556767 WHAMMQ8TF30 809 aa12.17□□□□□ -0.46
CCDC88C-212ENST00000556767 PSMG2Q969U7 264 aa12.17□□□□□ -0.46
CCDC88C-212ENST00000556767 CYFIP2Q96F07 1278 aa12.17□□□□□ -0.46
CCDC88C-212ENST00000556767 TMEM176AQ96HP8 235 aa12.17□□□□□ -0.46
CCDC88C-212ENST00000556767 KRT82Q9NSB4 513 aa12.17□□□□□ -0.46
CCDC88C-212ENST00000556767 DOCK6Q96HP0 2047 aa12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 SLC38A8A6NNN8 435 aa12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 F8VP50 259 aa12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 AP1G2O75843 785 aa12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 CSH1P0DML2 217 aa12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 CSH2P0DML3 217 aa12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 KRT5P13647 590 aa12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 PON1P27169 355 aa12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 GABRR2P28476 465 aa12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 USP8P40818 1118 aa12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 COPB1P53618 953 aaKnown RBP12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 RAD23BP54727 409 aa12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 MFAP3P55082 362 aa12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 TPM4P67936 248 aa12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 APBA1Q02410 837 aa12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 GCNT1Q02742 428 aa12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 IFRD2Q12894 506 aaPredicted RBP12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 MTMR3Q13615 1198 aa12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 ARHGAP44Q17R89 818 aa12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 SLC5A9Q2M3M2 681 aa12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 GJB7Q6PEY0 223 aa12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 FUKQ8N0W3 1084 aa12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 SLC4A11Q8NBS3 891 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms