RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 RALAP11233 206 aa27.78■■■□□ 2.04
CCDC88C-205ENST00000553403 PSMA2P25787 234 aa27.78■■■□□ 2.04
CCDC88C-205ENST00000553403 CCND3P30281 292 aaPredicted RBP27.78■■■□□ 2.04
CCDC88C-205ENST00000553403 TAF6P49848 677 aa27.78■■■□□ 2.04
CCDC88C-205ENST00000553403 GOLGA7BQ2TAP0 167 aa27.78■■■□□ 2.04
CCDC88C-205ENST00000553403 SV2CQ496J9 727 aa27.78■■■□□ 2.04
CCDC88C-205ENST00000553403 ARHGAP17Q68EM7 881 aa27.78■■■□□ 2.04
CCDC88C-205ENST00000553403 CCSAPQ6IQ19 270 aaPredicted RBP27.78■■■□□ 2.04
CCDC88C-205ENST00000553403 SYDE1Q6ZW31 735 aaPredicted RBP27.78■■■□□ 2.04
CCDC88C-205ENST00000553403 LIMS2Q7Z4I7 341 aa27.78■■■□□ 2.04
CCDC88C-205ENST00000553403 POLNQ7Z5Q5 900 aa27.78■■■□□ 2.04
CCDC88C-205ENST00000553403 ARRDC4Q8NCT1 418 aa27.78■■■□□ 2.04
CCDC88C-205ENST00000553403 JOSD2Q8TAC2 188 aa27.78■■■□□ 2.04
CCDC88C-205ENST00000553403 DCLK3Q9C098 648 aa27.78■■■□□ 2.04
CCDC88C-205ENST00000553403 ST3GAL5Q9UNP4 418 aa27.78■■■□□ 2.04
CCDC88C-205ENST00000553403 KPNA7A9QM74 516 aa27.77■■■□□ 2.04
CCDC88C-205ENST00000553403 OPA1O60313 960 aa27.77■■■□□ 2.04
CCDC88C-205ENST00000553403 PFKMP08237 780 aa27.77■■■□□ 2.04
CCDC88C-205ENST00000553403 PRKAR2AP13861 404 aaKnown RBP27.77■■■□□ 2.04
CCDC88C-205ENST00000553403 LRPAP1P30533 357 aa27.77■■■□□ 2.04
CCDC88C-205ENST00000553403 CAP1Q01518 475 aa27.77■■■□□ 2.04
CCDC88C-205ENST00000553403 ACAP1Q15027 740 aa27.77■■■□□ 2.04
CCDC88C-205ENST00000553403 KCNA10Q16322 511 aa27.77■■■□□ 2.04
CCDC88C-205ENST00000553403 PKDCCQ504Y2 493 aa27.77■■■□□ 2.04
CCDC88C-205ENST00000553403 CFAP58Q5T655 872 aa27.77■■■□□ 2.04
CCDC88C-205ENST00000553403 ACOT1Q86TX2 421 aa27.77■■■□□ 2.04
CCDC88C-205ENST00000553403 HACE1Q8IYU2 909 aa27.77■■■□□ 2.04
CCDC88C-205ENST00000553403 IQCKQ8N0W5 287 aa27.77■■■□□ 2.04
CCDC88C-205ENST00000553403 SH3GL2Q99962 352 aa27.77■■■□□ 2.04
CCDC88C-205ENST00000553403 HERPUD2Q9BSE4 406 aa27.77■■■□□ 2.04
CCDC88C-205ENST00000553403 CFHR5Q9BXR6 569 aa27.77■■■□□ 2.04
CCDC88C-205ENST00000553403 METTL5Q9NRN9 209 aaKnown RBP27.77■■■□□ 2.04
CCDC88C-205ENST00000553403 CCDC85CA6NKD9 419 aa27.76■■■□□ 2.03
CCDC88C-205ENST00000553403 ECEL1O95672 775 aa27.76■■■□□ 2.03
CCDC88C-205ENST00000553403 CHRNA1P02708 482 aa27.76■■■□□ 2.03
CCDC88C-205ENST00000553403 PTPN7P35236 360 aa27.76■■■□□ 2.03
CCDC88C-205ENST00000553403 GJC1P36383 396 aa27.76■■■□□ 2.03
CCDC88C-205ENST00000553403 NFX1Q12986 1120 aaKnown RBP27.76■■■□□ 2.03
CCDC88C-205ENST00000553403 TERF2Q15554 542 aa27.76■■■□□ 2.03
CCDC88C-205ENST00000553403 DPH6Q7L8W6 267 aa27.76■■■□□ 2.03
CCDC88C-205ENST00000553403 OR6B3Q8NGW1 331 aa27.76■■■□□ 2.03
CCDC88C-205ENST00000553403 C1orf54Q8WWF1 131 aa27.76■■■□□ 2.03
CCDC88C-205ENST00000553403 WNT8BQ93098 351 aa27.76■■■□□ 2.03
CCDC88C-205ENST00000553403 SLITRK1Q96PX8 696 aa27.76■■■□□ 2.03
CCDC88C-205ENST00000553403 FAM129AQ9BZQ8 928 aa27.76■■■□□ 2.03
CCDC88C-205ENST00000553403 TRIM31Q9BZY9 425 aa27.76■■■□□ 2.03
CCDC88C-205ENST00000553403 FEZ2Q9UHY8 353 aaPredicted RBP27.76■■■□□ 2.03
CCDC88C-205ENST00000553403 NME7Q9Y5B8 376 aa27.76■■■□□ 2.03
CCDC88C-205ENST00000553403 KRT1P04264 644 aa27.75■■■□□ 2.03
CCDC88C-205ENST00000553403 SOX4Q06945 474 aaPredicted RBP27.75■■■□□ 2.03
CCDC88C-205ENST00000553403 PPP1R26Q5T8A7 1209 aaPredicted RBP27.75■■■□□ 2.03
CCDC88C-205ENST00000553403 C12orf29Q8N999 325 aa27.75■■■□□ 2.03
CCDC88C-205ENST00000553403 PCSK9Q8NBP7 692 aaKnown RBP27.75■■■□□ 2.03
CCDC88C-205ENST00000553403 GRK7Q8WTQ7 553 aa27.75■■■□□ 2.03
CCDC88C-205ENST00000553403 RUFY1Q96T51 708 aa27.75■■■□□ 2.03
CCDC88C-205ENST00000553403 ZDHHC18Q9NUE0 388 aa27.75■■■□□ 2.03
CCDC88C-205ENST00000553403 RNF19AQ9NV58 838 aa27.75■■■□□ 2.03
CCDC88C-205ENST00000553403 FAN1Q9Y2M0 1017 aa27.75■■■□□ 2.03
CCDC88C-205ENST00000553403 GTF3C5Q9Y5Q8 519 aaPredicted RBP27.75■■■□□ 2.03
CCDC88C-205ENST00000553403 GPR182O15218 404 aa27.75■■■□□ 2.03
CCDC88C-205ENST00000553403 FAM163BP0C2L3 166 aa27.75■■■□□ 2.03
CCDC88C-205ENST00000553403 TCF4P15884 667 aa27.75■■■□□ 2.03
CCDC88C-205ENST00000553403 HOXD10P28358 340 aa27.75■■■□□ 2.03
CCDC88C-205ENST00000553403 MTMR3Q13615 1198 aa27.75■■■□□ 2.03
CCDC88C-205ENST00000553403 CCNG2Q16589 344 aa27.75■■■□□ 2.03
CCDC88C-205ENST00000553403 HADHQ16836 314 aaKnown RBP27.75■■■□□ 2.03
CCDC88C-205ENST00000553403 CRYBG2Q8N1P7 616 aa27.75■■■□□ 2.03
CCDC88C-205ENST00000553403 PPP1R10Q96QC0 940 aaKnown RBP27.75■■■□□ 2.03
CCDC88C-205ENST00000553403 FAM105AQ9NUU6 356 aa27.75■■■□□ 2.03
CCDC88C-205ENST00000553403 SRRDQ9UH36 339 aa27.75■■■□□ 2.03
CCDC88C-205ENST00000553403 SNX24Q9Y343 169 aa27.75■■■□□ 2.03
CCDC88C-205ENST00000553403 A8MXQ7 604 aa27.74■■■□□ 2.03
CCDC88C-205ENST00000553403 SPTLC1O15269 473 aa27.74■■■□□ 2.03
CCDC88C-205ENST00000553403 KCNJ1P48048 391 aa27.74■■■□□ 2.03
CCDC88C-205ENST00000553403 SNX16P57768 344 aa27.74■■■□□ 2.03
CCDC88C-205ENST00000553403 STK32AQ8WU08 396 aa27.74■■■□□ 2.03
CCDC88C-205ENST00000553403 KBTBD7Q8WVZ9 684 aa27.74■■■□□ 2.03
CCDC88C-205ENST00000553403 PIK3R5Q8WYR1 880 aa27.74■■■□□ 2.03
CCDC88C-205ENST00000553403 RNF25Q96BH1 459 aaPredicted RBP27.74■■■□□ 2.03
CCDC88C-205ENST00000553403 ZIM3Q96PE6 472 aa27.74■■■□□ 2.03
CCDC88C-205ENST00000553403 FMO2Q99518 471 aa27.74■■■□□ 2.03
CCDC88C-205ENST00000553403 CHST7Q9NS84 486 aa27.74■■■□□ 2.03
CCDC88C-205ENST00000553403 VPS18Q9P253 973 aa27.74■■■□□ 2.03
CCDC88C-205ENST00000553403 HESX1Q9UBX0 185 aa27.74■■■□□ 2.03
CCDC88C-205ENST00000553403 PTGESO14684 152 aa27.73■■■□□ 2.03
CCDC88C-205ENST00000553403 RNF40O75150 1001 aa27.73■■■□□ 2.03
CCDC88C-205ENST00000553403 KRT7P08729 469 aa27.73■■■□□ 2.03
CCDC88C-205ENST00000553403 ELNP15502 786 aa27.73■■■□□ 2.03
CCDC88C-205ENST00000553403 LLGL1Q15334 1064 aa27.73■■■□□ 2.03
CCDC88C-205ENST00000553403 ATP13A4Q4VNC1 1196 aa27.73■■■□□ 2.03
CCDC88C-205ENST00000553403 SPDYCQ5MJ68 293 aa27.73■■■□□ 2.03
CCDC88C-205ENST00000553403 SPOCD1Q6ZMY3 1216 aa27.73■■■□□ 2.03
CCDC88C-205ENST00000553403 CTU1Q7Z7A3 348 aaKnown RBP27.73■■■□□ 2.03
CCDC88C-205ENST00000553403 APPL2Q8NEU8 664 aa27.73■■■□□ 2.03
CCDC88C-205ENST00000553403 ZNF296Q8WUU4 475 aaPredicted RBP27.73■■■□□ 2.03
CCDC88C-205ENST00000553403 HEMGNQ9BXL5 484 aa27.73■■■□□ 2.03
CCDC88C-205ENST00000553403 SLC4A5Q9BY07 1137 aa27.73■■■□□ 2.03
CCDC88C-205ENST00000553403 SNX25Q9H3E2 840 aa27.73■■■□□ 2.03
CCDC88C-205ENST00000553403 SLC38A7Q9NVC3 462 aa27.73■■■□□ 2.03
CCDC88C-205ENST00000553403 GRHL1Q9NZI5 618 aa27.73■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms