RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 CHFRQ96EP1 664 aa12.31□□□□□ -0.44
NEK3-204ENST00000552973 ANKRD36BP1Q96IX9 119 aa12.31□□□□□ -0.44
NEK3-204ENST00000552973 SLC22A12Q96S37 553 aa12.31□□□□□ -0.44
NEK3-204ENST00000552973 PKMYT1Q99640 499 aa12.31□□□□□ -0.44
NEK3-204ENST00000552973 FBRSL1Q9HCM7 1045 aaKnown RBP12.31□□□□□ -0.44
NEK3-204ENST00000552973 SEMA4GQ9NTN9 838 aa12.31□□□□□ -0.44
NEK3-204ENST00000552973 INTS13Q9NVM9 706 aa12.31□□□□□ -0.44
NEK3-204ENST00000552973 GDAP2Q9NXN4 497 aa12.31□□□□□ -0.44
NEK3-204ENST00000552973 PATJQ8NI35 1801 aa12.31□□□□□ -0.44
NEK3-204ENST00000552973 EP300Q09472 2414 aaPredicted RBP12.31□□□□□ -0.44
NEK3-204ENST00000552973 PTPRJQ12913 1337 aa12.31□□□□□ -0.44
NEK3-204ENST00000552973 COL4A2P08572 1712 aa12.31□□□□□ -0.44
NEK3-204ENST00000552973 TICRRQ7Z2Z1 1910 aa12.31□□□□□ -0.44
NEK3-204ENST00000552973 GPR179Q6PRD1 2367 aa12.3□□□□□ -0.44
NEK3-204ENST00000552973 GVINP1Q7Z2Y8 2422 aa12.3□□□□□ -0.44
NEK3-204ENST00000552973 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.3□□□□□ -0.44
NEK3-204ENST00000552973 ZNF233A6NK53 670 aa12.3□□□□□ -0.44
NEK3-204ENST00000552973 GABRDO14764 452 aa12.3□□□□□ -0.44
NEK3-204ENST00000552973 NOL4O94818 638 aa12.3□□□□□ -0.44
NEK3-204ENST00000552973 PAPSS2O95340 614 aaPredicted RBP12.3□□□□□ -0.44
NEK3-204ENST00000552973 DDX6P26196 483 aaKnown RBP eCLIP12.3□□□□□ -0.44
NEK3-204ENST00000552973 LHX1P48742 406 aa12.3□□□□□ -0.44
NEK3-204ENST00000552973 NASPP49321 788 aaPredicted RBP12.3□□□□□ -0.44
NEK3-204ENST00000552973 MTF1Q14872 753 aa12.3□□□□□ -0.44
NEK3-204ENST00000552973 CCDC6Q16204 474 aa12.3□□□□□ -0.44
NEK3-204ENST00000552973 FOXD4L6Q3SYB3 417 aaPredicted RBP12.3□□□□□ -0.44
NEK3-204ENST00000552973 TMEM196Q5HYL7 178 aa12.3□□□□□ -0.44
NEK3-204ENST00000552973 FOXD4L3Q6VB84 417 aaPredicted RBP12.3□□□□□ -0.44
NEK3-204ENST00000552973 SYNPOQ8N3V7 929 aa12.3□□□□□ -0.44
NEK3-204ENST00000552973 FAM160A2Q8N612 972 aaPredicted RBP12.3□□□□□ -0.44
NEK3-204ENST00000552973 ARL14EPQ8N8R7 260 aaPredicted RBP12.3□□□□□ -0.44
NEK3-204ENST00000552973 LINC00301Q8NCQ3 95 aa12.3□□□□□ -0.44
NEK3-204ENST00000552973 LEO1Q8WVC0 666 aaPredicted RBP12.3□□□□□ -0.44
NEK3-204ENST00000552973 INTS4Q96HW7 963 aaKnown RBP12.3□□□□□ -0.44
NEK3-204ENST00000552973 HPDLQ96IR7 371 aa12.3□□□□□ -0.44
NEK3-204ENST00000552973 SYT15Q9BQS2 421 aa12.3□□□□□ -0.44
NEK3-204ENST00000552973 ZSCAN16Q9H4T2 348 aaPredicted RBP12.3□□□□□ -0.44
NEK3-204ENST00000552973 UXTQ9UBK9 157 aaPredicted RBP12.3□□□□□ -0.44
NEK3-204ENST00000552973 ZMYM5Q9UJ78 669 aa12.3□□□□□ -0.44
NEK3-204ENST00000552973 WNT6Q9Y6F9 365 aa12.3□□□□□ -0.44
NEK3-204ENST00000552973 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.29□□□□□ -0.44
NEK3-204ENST00000552973 C2orf78A6NCI8 922 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 TRDMT1O14717 391 aaKnown RBP12.29□□□□□ -0.44
NEK3-204ENST00000552973 AXIN1O15169 862 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 CLIC2O15247 247 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 SPTLC2O15270 562 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 GDF9O60383 454 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 RNF40O75150 1001 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 CST3P01034 146 aaPredicted RBP12.29□□□□□ -0.44
NEK3-204ENST00000552973 TNNC2P02585 160 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 CKMP06732 381 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 SDHBP21912 280 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 BDNFP23560 247 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 PCSK1P29120 753 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 CASP1P29466 404 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 CNR2P34972 360 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 GJA4P35212 333 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 HOXD13P35453 343 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 GRIK1P39086 918 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 ASIC1P78348 528 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 CYP27A1Q02318 531 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 FAM160A1Q05DH4 1040 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 MYO1EQ12965 1108 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 DUOXA2Q1HG44 320 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 FAM171BQ6P995 826 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 WDR5BQ86VZ2 330 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 NELFCDQ8IXH7 590 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 KBTBD7Q8WVZ9 684 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 MYLPFQ96A32 169 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 MYRFLQ96LU7 910 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 MMS19Q96T76 1030 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 P2RY13Q9BPV8 354 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 RTKNQ9BST9 563 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 TRIM9Q9C026 710 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 TNMDQ9H2S6 317 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 ECT2Q9H8V3 914 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 KIF9Q9HAQ2 790 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 ABCB6Q9NP58 842 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 DUS2Q9NX74 493 aaKnown RBP12.29□□□□□ -0.44
NEK3-204ENST00000552973 HSPBP1Q9NZL4 362 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 MAGEC2Q9UBF1 373 aaPredicted RBP12.29□□□□□ -0.44
NEK3-204ENST00000552973 SLC8A2Q9UPR5 921 aa12.29□□□□□ -0.44
NEK3-204ENST00000552973 FANCMQ8IYD8 2048 aa12.28□□□□□ -0.44
NEK3-204ENST00000552973 TRAV19A0A0A6YYK7 116 aa12.28□□□□□ -0.44
NEK3-204ENST00000552973 K7ELQ4 463 aaPredicted RBP12.28□□□□□ -0.44
NEK3-204ENST00000552973 USP17L7P0C7H9 530 aa12.28□□□□□ -0.44
NEK3-204ENST00000552973 DLATP10515 647 aaKnown RBP12.28□□□□□ -0.44
NEK3-204ENST00000552973 IFNAR2P48551 515 aa12.28□□□□□ -0.44
NEK3-204ENST00000552973 PSMD2Q13200 908 aa12.28□□□□□ -0.44
NEK3-204ENST00000552973 ZNF268Q14587 947 aaPredicted RBP12.28□□□□□ -0.44
NEK3-204ENST00000552973 PDGFRLQ15198 375 aa12.28□□□□□ -0.44
NEK3-204ENST00000552973 E2F4Q16254 413 aa12.28□□□□□ -0.44
NEK3-204ENST00000552973 CSRP2Q16527 193 aa12.28□□□□□ -0.44
NEK3-204ENST00000552973 CFAP221Q4G0U5 840 aa12.28□□□□□ -0.44
NEK3-204ENST00000552973 SHC4Q6S5L8 630 aa12.28□□□□□ -0.44
NEK3-204ENST00000552973 PRR23CQ6ZRP0 262 aa12.28□□□□□ -0.44
NEK3-204ENST00000552973 STXBP4Q6ZWJ1 553 aa12.28□□□□□ -0.44
NEK3-204ENST00000552973 SH3RF2Q8TEC5 729 aa12.28□□□□□ -0.44
NEK3-204ENST00000552973 OSCP1Q8WVF1 389 aa12.28□□□□□ -0.44
NEK3-204ENST00000552973 CCDC127Q96BQ5 260 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms