RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 GNPTABQ3T906 1256 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 CENPUQ71F23 418 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 OTOAQ7RTW8 1153 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 TRIM50Q86XT4 487 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 TDRPQ86YL5 185 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 RHPN2Q8IUC4 686 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 BRSK2Q8IWQ3 736 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 UNC45BQ8IWX7 931 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 MICALL2Q8IY33 904 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 THNSL1Q8IYQ7 743 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 SCYL3Q8IZE3 742 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 TMEM35BQ8NCS4 154 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 SLC35B2Q8TB61 432 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 LRRC8CQ8TDW0 803 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 C10orf82Q8WW14 230 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 TEX13BQ9BXU2 312 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 IMPG2Q9BZV3 1241 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 SLC17A7Q9P2U7 560 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 NXF1Q9UBU9 619 aaKnown RBP7.88□□□□□ -1.15
LIMA1-213ENST00000552720 ADAMTS5Q9UNA0 930 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 AGTPBP1Q9UPW5 1226 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 DRG1Q9Y295 367 aaKnown RBP7.88□□□□□ -1.15
LIMA1-213ENST00000552720 STARD13Q9Y3M8 1113 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 PTPRFP10586 1907 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 PAPPA2Q9BXP8 1791 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 ADCY3O60266 1144 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 ATG7O95352 703 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 ITGAVP06756 1048 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 CD19P15391 556 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 GM2AP17900 193 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 UBA1P22314 1058 aaKnown RBP7.88□□□□□ -1.15
LIMA1-213ENST00000552720 RPL22P35268 128 aaKnown RBP7.88□□□□□ -1.15
LIMA1-213ENST00000552720 YARSP54577 528 aaKnown RBP7.88□□□□□ -1.15
LIMA1-213ENST00000552720 TNFAIP1Q13829 316 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 NAA25Q14CX7 972 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 HHATQ5VTY9 493 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 IGDCC3Q8IVU1 814 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 TMEM192Q8IY95 271 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 FBXO36Q8NEA4 188 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 FBF1Q8TES7 1133 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 LRRN4Q8WUT4 740 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 ZNF75CPQ92670 426 aaPredicted RBP7.88□□□□□ -1.15
LIMA1-213ENST00000552720 PTPRN2Q92932 1015 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 NKD2Q969F2 451 aaPredicted RBP7.88□□□□□ -1.15
LIMA1-213ENST00000552720 GRAMD1AQ96CP6 724 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 SLC7A6OSQ96CW6 309 aaPredicted RBP7.88□□□□□ -1.15
LIMA1-213ENST00000552720 TTC25Q96NG3 672 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 LRRC37BQ96QE4 947 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 PAFAH2Q99487 392 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 PCDH9Q9HC56 1237 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 NPHS2Q9NP85 383 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 UBN1Q9NPG3 1134 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 HMGXB4Q9UGU5 601 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 DCTN4Q9UJW0 460 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 CEP83Q9Y592 693 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 GJA3Q9Y6H8 435 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 USH1CQ9Y6N9 552 aa7.88□□□□□ -1.15
LIMA1-213ENST00000552720 SPDYE16A6NNV3 312 aaPredicted RBP7.87□□□□□ -1.15
LIMA1-213ENST00000552720 B4GALT5O43286 388 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 SKAP2O75563 359 aaPredicted RBP7.87□□□□□ -1.15
LIMA1-213ENST00000552720 CCND1P24385 295 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 EPHB2P29323 1055 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 ASPAP45381 313 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 MMRN1Q13201 1228 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 PIGHQ14442 188 aaPredicted RBP7.87□□□□□ -1.15
LIMA1-213ENST00000552720 TARBP2Q15633 366 aaKnown RBP7.87□□□□□ -1.15
LIMA1-213ENST00000552720 STXBP2Q15833 593 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 BBS9Q3SYG4 887 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 EFHC2Q5JST6 749 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 SH3PXD2AQ5TCZ1 1133 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 NPNTQ6UXI9 565 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 DLK2Q6UY11 383 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 C3orf62Q6ZUJ4 267 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 ZNF276Q8N554 614 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 FAM71DQ8N9W8 422 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 RFWD2Q8NHY2 731 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 TCP10LQ8TDR4 215 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 PYROXD1Q8WU10 500 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 MZB1Q8WU39 189 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 TRAPPC12Q8WVT3 735 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 PRR11Q96HE9 360 aaPredicted RBP7.87□□□□□ -1.15
LIMA1-213ENST00000552720 CDHR1Q96JP9 859 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 TWNKQ96RR1 684 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 CPXM1Q96SM3 734 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 LBHD1Q9BQE6 289 aaPredicted RBP7.87□□□□□ -1.15
LIMA1-213ENST00000552720 PLCD4Q9BRC7 762 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 FOXP3Q9BZS1 431 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 NIF3L1Q9GZT8 377 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 METTL5Q9NRN9 209 aaKnown RBP7.87□□□□□ -1.15
LIMA1-213ENST00000552720 STK32BQ9NY57 414 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 NOP53Q9NZM5 478 aaKnown RBP7.87□□□□□ -1.15
LIMA1-213ENST00000552720 KANSL3Q9P2N6 904 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 PSMC3IPQ9P2W1 217 aaPredicted RBP7.87□□□□□ -1.15
LIMA1-213ENST00000552720 ZMYND8Q9ULU4 1186 aaPredicted RBP7.87□□□□□ -1.15
LIMA1-213ENST00000552720 SHOC2Q9UQ13 582 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 FARP2O94887 1054 aaPredicted RBP7.87□□□□□ -1.15
LIMA1-213ENST00000552720 MAP3K6O95382 1288 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 KRT19P08727 400 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 HOXC6P09630 235 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 KRT3P12035 628 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms