RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 CSGALNACT2Q8N6G5 542 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 CXorf38Q8TB03 319 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 MSANTD3Q96H12 275 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 ZNF560Q96MR9 790 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 CBWD1Q9BRT8 395 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 PI4K2AQ9BTU6 479 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 PCIF1Q9H4Z3 704 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 PDE11AQ9HCR9 933 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 PARD6AQ9NPB6 346 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 OLFML3Q9NRN5 406 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 GKN1Q9NS71 199 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 PANK4Q9NVE7 773 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 C2orf42Q9NWW7 574 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 DDX43Q9NXZ2 648 aaKnown RBP9.11□□□□□ -0.95
USP28-215ENST00000545608 L1RE1Q9UN81 338 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 PCDHB5Q9Y5E4 795 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 CFAP54Q96N23 3096 aa9.11□□□□□ -0.95
USP28-215ENST00000545608 SCN1AP35498 2009 aa9.1□□□□□ -0.95
USP28-215ENST00000545608 DMDP11532 3685 aa9.1□□□□□ -0.95
USP28-215ENST00000545608 K7ESF4 209 aa9.1□□□□□ -0.95
USP28-215ENST00000545608 HRO43593 1189 aa9.1□□□□□ -0.95
USP28-215ENST00000545608 HCRTO43612 131 aa9.1□□□□□ -0.95
USP28-215ENST00000545608 EXTL3O43909 919 aa9.1□□□□□ -0.95
USP28-215ENST00000545608 LDHAP00338 332 aaKnown RBP9.1□□□□□ -0.95
USP28-215ENST00000545608 ACAT1P24752 427 aaKnown RBP9.1□□□□□ -0.95
USP28-215ENST00000545608 PNPLA4P41247 253 aa9.1□□□□□ -0.95
USP28-215ENST00000545608 STAT6P42226 847 aa9.1□□□□□ -0.95
USP28-215ENST00000545608 NLRP12P59046 1061 aa9.1□□□□□ -0.95
USP28-215ENST00000545608 TSPY1Q01534 308 aa9.1□□□□□ -0.95
USP28-215ENST00000545608 BFSP1Q12934 665 aa9.1□□□□□ -0.95
USP28-215ENST00000545608 SRSF5Q13243 272 aaKnown RBP9.1□□□□□ -0.95
USP28-215ENST00000545608 LRRC32Q14392 662 aa9.1□□□□□ -0.95
USP28-215ENST00000545608 PPP2R5DQ14738 602 aa9.1□□□□□ -0.95
USP28-215ENST00000545608 DDR2Q16832 855 aa9.1□□□□□ -0.95
USP28-215ENST00000545608 CCDC142Q17RM4 750 aa9.1□□□□□ -0.95
USP28-215ENST00000545608 DGKKQ5KSL6 1271 aa9.1□□□□□ -0.95
USP28-215ENST00000545608 LMBRD2Q68DH5 695 aaPredicted RBP9.1□□□□□ -0.95
USP28-215ENST00000545608 TXNDC8Q6A555 127 aa9.1□□□□□ -0.95
USP28-215ENST00000545608 C1orf228Q6PIY5 440 aa9.1□□□□□ -0.95
USP28-215ENST00000545608 GPR161Q8N6U8 529 aaKnown RBP9.1□□□□□ -0.95
USP28-215ENST00000545608 CELF5Q8N6W0 485 aaKnown RBP9.1□□□□□ -0.95
USP28-215ENST00000545608 PDILTQ8N807 584 aa9.1□□□□□ -0.95
USP28-215ENST00000545608 MAB21L3Q8N8X9 362 aa9.1□□□□□ -0.95
USP28-215ENST00000545608 GLIS3Q8NEA6 775 aa9.1□□□□□ -0.95
USP28-215ENST00000545608 RIN3Q8TB24 985 aa9.1□□□□□ -0.95
USP28-215ENST00000545608 NOC3LQ8WTT2 800 aaKnown RBP9.1□□□□□ -0.95
USP28-215ENST00000545608 CACTINQ8WUQ7 758 aaKnown RBP9.1□□□□□ -0.95
USP28-215ENST00000545608 GLMNQ92990 594 aa9.1□□□□□ -0.95
USP28-215ENST00000545608 USP13Q92995 863 aaPredicted RBP9.1□□□□□ -0.95
USP28-215ENST00000545608 SECISBP2LQ93073 1101 aaKnown RBP9.1□□□□□ -0.95
USP28-215ENST00000545608 HPS3Q969F9 1004 aa9.1□□□□□ -0.95
USP28-215ENST00000545608 GCNAQ96QF7 691 aa9.1□□□□□ -0.95
USP28-215ENST00000545608 PKMYT1Q99640 499 aa9.1□□□□□ -0.95
USP28-215ENST00000545608 FAM83CQ9BQN1 747 aa9.1□□□□□ -0.95
USP28-215ENST00000545608 ACBD6Q9BR61 282 aa9.1□□□□□ -0.95
USP28-215ENST00000545608 RBAKQ9NYW8 714 aaPredicted RBP9.1□□□□□ -0.95
USP28-215ENST00000545608 SIX4Q9UIU6 781 aa9.1□□□□□ -0.95
USP28-215ENST00000545608 GTF3C4Q9UKN8 822 aa9.1□□□□□ -0.95
USP28-215ENST00000545608 MAGED2Q9UNF1 606 aaPredicted RBP9.1□□□□□ -0.95
USP28-215ENST00000545608 CCL26Q9Y258 94 aa9.1□□□□□ -0.95
USP28-215ENST00000545608 MORC2Q9Y6X9 1032 aaPredicted RBP9.1□□□□□ -0.95
USP28-215ENST00000545608 TICRRQ7Z2Z1 1910 aa9.09□□□□□ -0.95
USP28-215ENST00000545608 CEP250Q9BV73 2442 aa9.09□□□□□ -0.95
USP28-215ENST00000545608 OTOL1A6NHN0 477 aaPredicted RBP9.09□□□□□ -0.95
USP28-215ENST00000545608 GABRDO14764 452 aa9.09□□□□□ -0.95
USP28-215ENST00000545608 HUS1O60921 280 aa9.09□□□□□ -0.95
USP28-215ENST00000545608 PAPSS2O95340 614 aaPredicted RBP9.09□□□□□ -0.95
USP28-215ENST00000545608 KRT19P08727 400 aa9.09□□□□□ -0.95
USP28-215ENST00000545608 CSH1P0DML2 217 aa9.09□□□□□ -0.95
USP28-215ENST00000545608 CSH2P0DML3 217 aa9.09□□□□□ -0.95
USP28-215ENST00000545608 CYP2F1P24903 491 aa9.09□□□□□ -0.95
USP28-215ENST00000545608 NASPP49321 788 aaPredicted RBP9.09□□□□□ -0.95
USP28-215ENST00000545608 ATXN1P54253 815 aaKnown RBP9.09□□□□□ -0.95
USP28-215ENST00000545608 EMP3P54852 163 aa9.09□□□□□ -0.95
USP28-215ENST00000545608 RBP5P82980 135 aa9.09□□□□□ -0.95
USP28-215ENST00000545608 ALCAMQ13740 583 aa9.09□□□□□ -0.95
USP28-215ENST00000545608 CCINQ13939 588 aa9.09□□□□□ -0.95
USP28-215ENST00000545608 NFE2Q16621 373 aaPredicted RBP9.09□□□□□ -0.95
USP28-215ENST00000545608 ITPRIPL2Q3MIP1 535 aa9.09□□□□□ -0.95
USP28-215ENST00000545608 INTS6LQ5JSJ4 861 aaKnown RBP9.09□□□□□ -0.95
USP28-215ENST00000545608 HEATR6Q6AI08 1181 aaKnown RBP9.09□□□□□ -0.95
USP28-215ENST00000545608 TRIM68Q6AZZ1 485 aa9.09□□□□□ -0.95
USP28-215ENST00000545608 PRR23BQ6ZRT6 265 aa9.09□□□□□ -0.95
USP28-215ENST00000545608 MON1AQ86VX9 555 aa9.09□□□□□ -0.95
USP28-215ENST00000545608 GPD1LQ8N335 351 aa9.09□□□□□ -0.95
USP28-215ENST00000545608 LRRC52Q8N7C0 313 aa9.09□□□□□ -0.95
USP28-215ENST00000545608 OR5B17Q8NGF7 314 aa9.09□□□□□ -0.95
USP28-215ENST00000545608 LEO1Q8WVC0 666 aaPredicted RBP9.09□□□□□ -0.95
USP28-215ENST00000545608 CHFRQ96EP1 664 aa9.09□□□□□ -0.95
USP28-215ENST00000545608 INTS4Q96HW7 963 aaKnown RBP9.09□□□□□ -0.95
USP28-215ENST00000545608 MTMR12Q9C0I1 747 aa9.09□□□□□ -0.95
USP28-215ENST00000545608 TMEM206Q9H813 350 aa9.09□□□□□ -0.95
USP28-215ENST00000545608 HPS4Q9NQG7 708 aa9.09□□□□□ -0.95
USP28-215ENST00000545608 THG1LQ9NWX6 298 aaKnown RBP9.09□□□□□ -0.95
USP28-215ENST00000545608 GDAP2Q9NXN4 497 aa9.09□□□□□ -0.95
USP28-215ENST00000545608 TFIP11Q9UBB9 837 aaKnown RBP9.09□□□□□ -0.95
USP28-215ENST00000545608 GMEB2Q9UKD1 530 aa9.09□□□□□ -0.95
USP28-215ENST00000545608 ITGA11Q9UKX5 1188 aa9.09□□□□□ -0.95
USP28-215ENST00000545608 USP18Q9UMW8 372 aa9.09□□□□□ -0.95
USP28-215ENST00000545608 SNX9Q9Y5X1 595 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms