RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 UNC5CO95185 931 aa15.8■□□□□ 0.12
USP28-214ENST00000545540 CXCL8P10145 99 aa15.8■□□□□ 0.12
USP28-214ENST00000545540 UBA1P22314 1058 aaKnown RBP15.8■□□□□ 0.12
USP28-214ENST00000545540 TCF7P36402 384 aaPredicted RBP15.8■□□□□ 0.12
USP28-214ENST00000545540 IRX4P78413 519 aa15.8■□□□□ 0.12
USP28-214ENST00000545540 ATP11AP98196 1134 aa15.8■□□□□ 0.12
USP28-214ENST00000545540 C1QBPQ07021 282 aaKnown RBP15.8■□□□□ 0.12
USP28-214ENST00000545540 SETDB1Q15047 1291 aa15.8■□□□□ 0.12
USP28-214ENST00000545540 ZNF699Q32M78 642 aa15.8■□□□□ 0.12
USP28-214ENST00000545540 ZNF75CPQ92670 426 aaPredicted RBP15.8■□□□□ 0.12
USP28-214ENST00000545540 COPS5Q92905 334 aa15.8■□□□□ 0.12
USP28-214ENST00000545540 DHX33Q9H6R0 707 aaKnown RBP15.8■□□□□ 0.12
USP28-214ENST00000545540 ACAD9Q9H845 621 aa15.8■□□□□ 0.12
USP28-214ENST00000545540 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.8■□□□□ 0.12
USP28-214ENST00000545540 C15orf41Q9Y2V0 281 aa15.8■□□□□ 0.12
USP28-214ENST00000545540 CFAP73A6NFT4 308 aa15.8■□□□□ 0.12
USP28-214ENST00000545540 STAM2O75886 525 aa15.8■□□□□ 0.12
USP28-214ENST00000545540 OASLQ15646 514 aaKnown RBP15.8■□□□□ 0.12
USP28-214ENST00000545540 C15orf59Q2T9L4 293 aaPredicted RBP15.8■□□□□ 0.12
USP28-214ENST00000545540 HSDL1Q3SXM5 330 aa15.8■□□□□ 0.12
USP28-214ENST00000545540 SCYL2Q6P3W7 929 aa15.8■□□□□ 0.12
USP28-214ENST00000545540 EP400NLQ6ZTU2 488 aa15.8■□□□□ 0.12
USP28-214ENST00000545540 CENPUQ71F23 418 aa15.8■□□□□ 0.12
USP28-214ENST00000545540 LONP2Q86WA8 852 aa15.8■□□□□ 0.12
USP28-214ENST00000545540 NCAPG2Q86XI2 1143 aa15.8■□□□□ 0.12
USP28-214ENST00000545540 KCTD6Q8NC69 237 aa15.8■□□□□ 0.12
USP28-214ENST00000545540 TMEM35BQ8NCS4 154 aa15.8■□□□□ 0.12
USP28-214ENST00000545540 RBM41Q96IZ5 413 aaKnown RBP15.8■□□□□ 0.12
USP28-214ENST00000545540 L3MBTL3Q96JM7 780 aaPredicted RBP15.8■□□□□ 0.12
USP28-214ENST00000545540 PAFAH2Q99487 392 aa15.8■□□□□ 0.12
USP28-214ENST00000545540 ASS1P00966 412 aaKnown RBP15.8■□□□□ 0.12
USP28-214ENST00000545540 T-ENOLP0DO92 83 aa15.8■□□□□ 0.12
USP28-214ENST00000545540 STAT5BP51692 787 aa15.8■□□□□ 0.12
USP28-214ENST00000545540 GJC2Q5T442 439 aaPredicted RBP15.8■□□□□ 0.12
USP28-214ENST00000545540 FKBP1CQ5VVH2 108 aa15.8■□□□□ 0.12
USP28-214ENST00000545540 RFWD3Q6PCD5 774 aa15.8■□□□□ 0.12
USP28-214ENST00000545540 REPS2Q8NFH8 660 aa15.8■□□□□ 0.12
USP28-214ENST00000545540 DENND1AQ8TEH3 1009 aa15.8■□□□□ 0.12
USP28-214ENST00000545540 CFAP36Q96G28 342 aa15.8■□□□□ 0.12
USP28-214ENST00000545540 TEX13BQ9BXU2 312 aa15.8■□□□□ 0.12
USP28-214ENST00000545540 TOP3BO95985 862 aaKnown RBP15.79■□□□□ 0.12
USP28-214ENST00000545540 RGS7P49802 495 aa15.79■□□□□ 0.12
USP28-214ENST00000545540 CLCN3P51790 818 aa15.79■□□□□ 0.12
USP28-214ENST00000545540 STXBP2Q15833 593 aa15.79■□□□□ 0.12
USP28-214ENST00000545540 TREML2Q5T2D2 321 aa15.79■□□□□ 0.12
USP28-214ENST00000545540 ASRGL1Q7L266 308 aa15.79■□□□□ 0.12
USP28-214ENST00000545540 CTAGE3PQ8IX95 158 aa15.79■□□□□ 0.12
USP28-214ENST00000545540 MECRQ9BV79 373 aa15.79■□□□□ 0.12
USP28-214ENST00000545540 ARMCX1Q9P291 453 aa15.79■□□□□ 0.12
USP28-214ENST00000545540 XPO7Q9UIA9 1087 aaKnown RBP15.79■□□□□ 0.12
USP28-214ENST00000545540 RABGEF1Q9UJ41 708 aa15.79■□□□□ 0.12
USP28-214ENST00000545540 HEY1Q9Y5J3 304 aa15.79■□□□□ 0.12
USP28-214ENST00000545540 CCDC195A0A1B0GUA6 201 aa15.79■□□□□ 0.12
USP28-214ENST00000545540 KITP10721 976 aa15.79■□□□□ 0.12
USP28-214ENST00000545540 ARL2P36404 184 aa15.79■□□□□ 0.12
USP28-214ENST00000545540 YWHAGP61981 247 aaKnown RBP eCLIP15.79■□□□□ 0.12
USP28-214ENST00000545540 CLDN10P78369 228 aa15.79■□□□□ 0.12
USP28-214ENST00000545540 TLDC1Q6P9B6 456 aa15.79■□□□□ 0.12
USP28-214ENST00000545540 TTC7BQ86TV6 843 aa15.79■□□□□ 0.12
USP28-214ENST00000545540 ZBED3Q96IU2 234 aaPredicted RBP15.79■□□□□ 0.12
USP28-214ENST00000545540 TBC1D10AQ9BXI6 508 aa15.79■□□□□ 0.12
USP28-214ENST00000545540 SMYD3Q9H7B4 428 aa15.79■□□□□ 0.12
USP28-214ENST00000545540 MINDY3Q9H8M7 445 aa15.79■□□□□ 0.12
USP28-214ENST00000545540 NAMPTP43490 491 aa15.78■□□□□ 0.12
USP28-214ENST00000545540 MAP3K10Q02779 954 aa15.78■□□□□ 0.12
USP28-214ENST00000545540 NBPF20Q3BBV1 942 aa15.78■□□□□ 0.12
USP28-214ENST00000545540 FAM111AQ96PZ2 611 aa15.78■□□□□ 0.12
USP28-214ENST00000545540 MARCOQ9UEW3 520 aaPredicted RBP15.78■□□□□ 0.12
USP28-214ENST00000545540 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.78■□□□□ 0.12
USP28-214ENST00000545540 BBOF1Q8ND07 529 aa15.78■□□□□ 0.12
USP28-214ENST00000545540 MICAL1Q8TDZ2 1067 aa15.78■□□□□ 0.12
USP28-214ENST00000545540 LPIN3Q9BQK8 851 aa15.78■□□□□ 0.12
USP28-214ENST00000545540 GINS2Q9Y248 185 aa15.78■□□□□ 0.12
USP28-214ENST00000545540 SPDYE16A6NNV3 312 aaPredicted RBP15.78■□□□□ 0.12
USP28-214ENST00000545540 ERBB2P04626 1255 aa15.78■□□□□ 0.12
USP28-214ENST00000545540 PDHA1P08559 390 aa15.78■□□□□ 0.12
USP28-214ENST00000545540 RBP3P10745 1247 aa15.78■□□□□ 0.12
USP28-214ENST00000545540 TBXAS1P24557 533 aaPredicted RBP15.78■□□□□ 0.12
USP28-214ENST00000545540 ELK3P41970 407 aa15.78■□□□□ 0.12
USP28-214ENST00000545540 NLRP9Q7RTR0 991 aa15.78■□□□□ 0.12
USP28-214ENST00000545540 PRPF39Q86UA1 669 aaKnown RBP15.78■□□□□ 0.12
USP28-214ENST00000545540 C12orf29Q8N999 325 aa15.78■□□□□ 0.12
USP28-214ENST00000545540 SPATA18Q8TC71 538 aa15.78■□□□□ 0.12
USP28-214ENST00000545540 SLC13A1Q9BZW2 595 aa15.78■□□□□ 0.12
USP28-214ENST00000545540 SDCBP2Q9H190 292 aa15.78■□□□□ 0.12
USP28-214ENST00000545540 NOP53Q9NZM5 478 aaKnown RBP15.78■□□□□ 0.12
USP28-214ENST00000545540 MAFBQ9Y5Q3 323 aaPredicted RBP15.78■□□□□ 0.12
USP28-214ENST00000545540 ALOX15BO15296 676 aa15.77■□□□□ 0.12
USP28-214ENST00000545540 ADCY3O60266 1144 aa15.77■□□□□ 0.12
USP28-214ENST00000545540 UGT1A9O60656 530 aa15.77■□□□□ 0.12
USP28-214ENST00000545540 EDF1O60869 148 aaKnown RBP15.77■□□□□ 0.12
USP28-214ENST00000545540 ARIH2O95376 493 aa15.77■□□□□ 0.12
USP28-214ENST00000545540 F7P08709 466 aaPredicted RBP15.77■□□□□ 0.12
USP28-214ENST00000545540 EIF3EP60228 445 aaKnown RBP15.77■□□□□ 0.12
USP28-214ENST00000545540 DUOXA2Q1HG44 320 aa15.77■□□□□ 0.12
USP28-214ENST00000545540 SCYL3Q8IZE3 742 aa15.77■□□□□ 0.12
USP28-214ENST00000545540 FAM13CQ8NE31 585 aa15.77■□□□□ 0.12
USP28-214ENST00000545540 RSRC1Q96IZ7 334 aaKnown RBP15.77■□□□□ 0.12
USP28-214ENST00000545540 NIF3L1Q9GZT8 377 aa15.77■□□□□ 0.12
USP28-214ENST00000545540 UGT1A7Q9HAW7 530 aa15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms