RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 TMEM121Q9BTD3 319 aa18.97■□□□□ 0.63
VIM-209ENST00000544301 SYNCQ9H7C4 482 aa18.97■□□□□ 0.63
VIM-209ENST00000544301 VRTNQ9H8Y1 702 aa18.97■□□□□ 0.63
VIM-209ENST00000544301 CYP3A43Q9HB55 503 aa18.97■□□□□ 0.63
VIM-209ENST00000544301 METTL5Q9NRN9 209 aaKnown RBP18.97■□□□□ 0.63
VIM-209ENST00000544301 TMEM51Q9NW97 253 aa18.97■□□□□ 0.63
VIM-209ENST00000544301 GOLGA6L7A0A1B0GV03 622 aa18.96■□□□□ 0.63
VIM-209ENST00000544301 GH1P01241 217 aa18.96■□□□□ 0.63
VIM-209ENST00000544301 VTNP04004 478 aa18.96■□□□□ 0.63
VIM-209ENST00000544301 ARF4P18085 180 aaPredicted RBP18.96■□□□□ 0.63
VIM-209ENST00000544301 PLCB3Q01970 1234 aa18.96■□□□□ 0.63
VIM-209ENST00000544301 MORF4L2Q15014 288 aa18.96■□□□□ 0.63
VIM-209ENST00000544301 HADHQ16836 314 aaKnown RBP18.96■□□□□ 0.63
VIM-209ENST00000544301 CCDC142Q17RM4 750 aa18.96■□□□□ 0.63
VIM-209ENST00000544301 ZNF792Q3KQV3 632 aa18.96■□□□□ 0.63
VIM-209ENST00000544301 KCNT1Q5JUK3 1230 aa18.96■□□□□ 0.63
VIM-209ENST00000544301 PCDH9Q9HC56 1237 aa18.96■□□□□ 0.63
VIM-209ENST00000544301 EURLQ9NYK6 297 aa18.96■□□□□ 0.63
VIM-209ENST00000544301 TBK1Q9UHD2 729 aa18.96■□□□□ 0.63
VIM-209ENST00000544301 WDR3Q9UNX4 943 aaKnown RBP eCLIP18.96■□□□□ 0.63
VIM-209ENST00000544301 SGK1O00141 431 aa18.95■□□□□ 0.62
VIM-209ENST00000544301 DYNLT1P63172 113 aa18.95■□□□□ 0.62
VIM-209ENST00000544301 TAZQ16635 292 aa18.95■□□□□ 0.62
VIM-209ENST00000544301 SPRED3Q2MJR0 410 aa18.95■□□□□ 0.62
VIM-209ENST00000544301 RNASEH2BQ5TBB1 312 aaKnown RBP18.95■□□□□ 0.62
VIM-209ENST00000544301 FBXW10Q5XX13 1052 aa18.95■□□□□ 0.62
VIM-209ENST00000544301 PPTC7Q8NI37 304 aa18.95■□□□□ 0.62
VIM-209ENST00000544301 CCT6BQ92526 530 aa18.95■□□□□ 0.62
VIM-209ENST00000544301 CFAP57Q96MR6 1250 aa18.95■□□□□ 0.62
VIM-209ENST00000544301 KCNK9Q9NPC2 374 aa18.95■□□□□ 0.62
VIM-209ENST00000544301 ZNF286BP0CG31 522 aa18.95■□□□□ 0.62
VIM-209ENST00000544301 BRAFP15056 766 aa18.95■□□□□ 0.62
VIM-209ENST00000544301 KDELR1P24390 212 aa18.95■□□□□ 0.62
VIM-209ENST00000544301 PSMC4P43686 418 aa18.95■□□□□ 0.62
VIM-209ENST00000544301 GABRB2P47870 512 aa18.95■□□□□ 0.62
VIM-209ENST00000544301 SNAPC2Q13487 334 aa18.95■□□□□ 0.62
VIM-209ENST00000544301 MPP2Q14168 576 aa18.95■□□□□ 0.62
VIM-209ENST00000544301 LACTB2Q53H82 288 aaPredicted RBP18.95■□□□□ 0.62
VIM-209ENST00000544301 ANKRD20A8PQ5CZ79 823 aa18.95■□□□□ 0.62
VIM-209ENST00000544301 USP50Q70EL3 339 aaPredicted RBP18.95■□□□□ 0.62
VIM-209ENST00000544301 ILDR2Q71H61 639 aa18.95■□□□□ 0.62
VIM-209ENST00000544301 CCDC13Q8IYE1 715 aa18.95■□□□□ 0.62
VIM-209ENST00000544301 CNPY4Q8N129 248 aa18.95■□□□□ 0.62
VIM-209ENST00000544301 AFG1LQ8WV93 481 aa18.95■□□□□ 0.62
VIM-209ENST00000544301 DYDC1Q8WWB3 177 aa18.95■□□□□ 0.62
VIM-209ENST00000544301 MCRS1Q96EZ8 462 aa18.95■□□□□ 0.62
VIM-209ENST00000544301 HPDLQ96IR7 371 aa18.95■□□□□ 0.62
VIM-209ENST00000544301 ACTR5Q9H9F9 607 aaPredicted RBP18.95■□□□□ 0.62
VIM-209ENST00000544301 SAE1Q9UBE0 346 aaPredicted RBP18.95■□□□□ 0.62
VIM-209ENST00000544301 M0QYV0 167 aa18.94■□□□□ 0.62
VIM-209ENST00000544301 DNM1LO00429 736 aa18.94■□□□□ 0.62
VIM-209ENST00000544301 P4HA1P13674 534 aa18.94■□□□□ 0.62
VIM-209ENST00000544301 GPD2P43304 727 aa18.94■□□□□ 0.62
VIM-209ENST00000544301 OTUD4Q01804 1114 aaKnown RBP18.94■□□□□ 0.62
VIM-209ENST00000544301 TMEM132DQ14C87 1099 aa18.94■□□□□ 0.62
VIM-209ENST00000544301 BBS12Q6ZW61 710 aa18.94■□□□□ 0.62
VIM-209ENST00000544301 ANKRD42Q8N9B4 389 aa18.94■□□□□ 0.62
VIM-209ENST00000544301 ACTL9Q8TC94 416 aa18.94■□□□□ 0.62
VIM-209ENST00000544301 P3H4Q92791 437 aa18.94■□□□□ 0.62
VIM-209ENST00000544301 TTC25Q96NG3 672 aa18.94■□□□□ 0.62
VIM-209ENST00000544301 ELAC2Q9BQ52 826 aaKnown RBP18.94■□□□□ 0.62
VIM-209ENST00000544301 VTA1Q9NP79 307 aa18.94■□□□□ 0.62
VIM-209ENST00000544301 SAMD15Q9P1V8 674 aa18.94■□□□□ 0.62
VIM-209ENST00000544301 AGAP1Q9UPQ3 857 aa18.94■□□□□ 0.62
VIM-209ENST00000544301 DYNC1LI1Q9Y6G9 523 aaKnown RBP18.94■□□□□ 0.62
VIM-209ENST00000544301 H0YHG0 523 aa18.94■□□□□ 0.62
VIM-209ENST00000544301 CST8O60676 142 aa18.94■□□□□ 0.62
VIM-209ENST00000544301 IFNB1P01574 187 aa18.94■□□□□ 0.62
VIM-209ENST00000544301 HMGCRP04035 888 aa18.94■□□□□ 0.62
VIM-209ENST00000544301 VDRP11473 427 aa18.94■□□□□ 0.62
VIM-209ENST00000544301 ADORA2AP29274 412 aa18.94■□□□□ 0.62
VIM-209ENST00000544301 MYO1EQ12965 1108 aa18.94■□□□□ 0.62
VIM-209ENST00000544301 ITIH4Q14624 930 aa18.94■□□□□ 0.62
VIM-209ENST00000544301 FASTKD3Q14CZ7 662 aaKnown RBP18.94■□□□□ 0.62
VIM-209ENST00000544301 KYAT1Q16773 422 aa18.94■□□□□ 0.62
VIM-209ENST00000544301 MAP1SQ66K74 1059 aaPredicted RBP18.94■□□□□ 0.62
VIM-209ENST00000544301 MTHFD1LQ6UB35 978 aa18.94■□□□□ 0.62
VIM-209ENST00000544301 ANKS4BQ8N8V4 417 aa18.94■□□□□ 0.62
VIM-209ENST00000544301 GPRC5AQ8NFJ5 357 aa18.94■□□□□ 0.62
VIM-209ENST00000544301 ZC3H15Q8WU90 426 aaKnown RBP18.94■□□□□ 0.62
VIM-209ENST00000544301 HEXIM2Q96MH2 286 aaKnown RBP18.94■□□□□ 0.62
VIM-209ENST00000544301 FRMD8P1Q9BZ68 369 aaPredicted RBP18.94■□□□□ 0.62
VIM-209ENST00000544301 NSRP1Q9H0G5 558 aaKnown RBP18.94■□□□□ 0.62
VIM-209ENST00000544301 KDM4CQ9H3R0 1056 aa18.94■□□□□ 0.62
VIM-209ENST00000544301 SHOC2Q9UQ13 582 aa18.94■□□□□ 0.62
VIM-209ENST00000544301 COL1A2P08123 1366 aa18.93■□□□□ 0.62
VIM-209ENST00000544301 RBM47A0AV96 593 aaKnown RBP18.93■□□□□ 0.62
VIM-209ENST00000544301 CCT8L1PA6NM43 557 aa18.93■□□□□ 0.62
VIM-209ENST00000544301 CD48P09326 243 aa18.93■□□□□ 0.62
VIM-209ENST00000544301 GCAP28676 217 aa18.93■□□□□ 0.62
VIM-209ENST00000544301 SRRM1Q8IYB3 904 aaKnown RBP18.93■□□□□ 0.62
VIM-209ENST00000544301 RIBC1Q8N443 379 aaPredicted RBP18.93■□□□□ 0.62
VIM-209ENST00000544301 TTC13Q8NBP0 860 aa18.93■□□□□ 0.62
VIM-209ENST00000544301 MAML1Q92585 1016 aa18.93■□□□□ 0.62
VIM-209ENST00000544301 PRCCQ92733 491 aaPredicted RBP18.93■□□□□ 0.62
VIM-209ENST00000544301 EMID1Q96A84 441 aaPredicted RBP18.93■□□□□ 0.62
VIM-209ENST00000544301 C16orf70Q9BSU1 422 aa18.93■□□□□ 0.62
VIM-209ENST00000544301 PCSK1NQ9UHG2 260 aa18.93■□□□□ 0.62
VIM-209ENST00000544301 PNMA3Q9UL41 463 aa18.93■□□□□ 0.62
VIM-209ENST00000544301 ACTL7BQ9Y614 415 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms