RNA–Protein interactions for RNA: ENST00000540846.6

SMAD3-204, Transcript of SMAD family member 3, humanhuman

TSL 1 (best) BASIC

Gene SMAD3, Length 1,567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-204ENST00000540846 SLC9A7Q96T83 725 aa13.23□□□□□ -0.29
SMAD3-204ENST00000540846 SELENOOQ9BVL4 669 aa13.23□□□□□ -0.29
SMAD3-204ENST00000540846 PDCL3Q9H2J4 239 aa13.23□□□□□ -0.29
SMAD3-204ENST00000540846 CYP3A43Q9HB55 503 aa13.23□□□□□ -0.29
SMAD3-204ENST00000540846 RBM12Q9NTZ6 932 aaKnown RBP13.23□□□□□ -0.29
SMAD3-204ENST00000540846 CNOT8Q9UFF9 292 aaKnown RBP13.23□□□□□ -0.29
SMAD3-204ENST00000540846 NME7Q9Y5B8 376 aa13.23□□□□□ -0.29
SMAD3-204ENST00000540846 PLXNA4Q9HCM2 1894 aa13.22□□□□□ -0.29
SMAD3-204ENST00000540846 PGRMC1O00264 195 aaKnown RBP13.22□□□□□ -0.29
SMAD3-204ENST00000540846 CFHP08603 1231 aa13.22□□□□□ -0.29
SMAD3-204ENST00000540846 WEE2P0C1S8 567 aa13.22□□□□□ -0.29
SMAD3-204ENST00000540846 P4HA1P13674 534 aa13.22□□□□□ -0.29
SMAD3-204ENST00000540846 RAP1GAPP47736 663 aa13.22□□□□□ -0.29
SMAD3-204ENST00000540846 VSNL1P62760 191 aa13.22□□□□□ -0.29
SMAD3-204ENST00000540846 C1QBPQ07021 282 aaKnown RBP13.22□□□□□ -0.29
SMAD3-204ENST00000540846 SHHQ15465 462 aa13.22□□□□□ -0.29
SMAD3-204ENST00000540846 PTPROQ16827 1216 aa13.22□□□□□ -0.29
SMAD3-204ENST00000540846 SOWAHAQ2M3V2 549 aa13.22□□□□□ -0.29
SMAD3-204ENST00000540846 SV2CQ496J9 727 aa13.22□□□□□ -0.29
SMAD3-204ENST00000540846 TIGD5Q53EQ6 642 aa13.22□□□□□ -0.29
SMAD3-204ENST00000540846 CCDC70Q6NSX1 233 aa13.22□□□□□ -0.29
SMAD3-204ENST00000540846 CC2D1AQ6P1N0 951 aaPredicted RBP13.22□□□□□ -0.29
SMAD3-204ENST00000540846 HNRNPLLQ8WVV9 542 aaKnown RBP13.22□□□□□ -0.29
SMAD3-204ENST00000540846 KBTBD7Q8WVZ9 684 aa13.22□□□□□ -0.29
SMAD3-204ENST00000540846 CPA5Q8WXQ8 436 aa13.22□□□□□ -0.29
SMAD3-204ENST00000540846 TMEM175Q9BSA9 504 aa13.22□□□□□ -0.29
SMAD3-204ENST00000540846 CARD9Q9H257 536 aa13.22□□□□□ -0.29
SMAD3-204ENST00000540846 NXF1Q9UBU9 619 aaKnown RBP13.22□□□□□ -0.29
SMAD3-204ENST00000540846 TMEM59LQ9UK28 342 aa13.22□□□□□ -0.29
SMAD3-204ENST00000540846 TTC7AQ9ULT0 858 aaPredicted RBP13.22□□□□□ -0.29
SMAD3-204ENST00000540846 PCDHGC3Q9UN70 934 aa13.22□□□□□ -0.29
SMAD3-204ENST00000540846 ALG6Q9Y672 507 aa13.22□□□□□ -0.29
SMAD3-204ENST00000540846 MRPL42Q9Y6G3 142 aaKnown RBP13.22□□□□□ -0.29
SMAD3-204ENST00000540846 SLC4A7Q9Y6M7 1214 aa13.22□□□□□ -0.29
SMAD3-204ENST00000540846 H0YGN5 161 aa13.21□□□□□ -0.29
SMAD3-204ENST00000540846 M0QZQ0 153 aa13.21□□□□□ -0.29
SMAD3-204ENST00000540846 NRP1O14786 923 aa13.21□□□□□ -0.29
SMAD3-204ENST00000540846 CEP104O60308 925 aa13.21□□□□□ -0.29
SMAD3-204ENST00000540846 B3GAT3O94766 335 aa13.21□□□□□ -0.29
SMAD3-204ENST00000540846 ZRANB2O95218 330 aaKnown RBP eCLIP13.21□□□□□ -0.29
SMAD3-204ENST00000540846 GALTP07902 379 aa13.21□□□□□ -0.29
SMAD3-204ENST00000540846 PAEPP09466 180 aa13.21□□□□□ -0.29
SMAD3-204ENST00000540846 ATP2A2P16615 1042 aaKnown RBP13.21□□□□□ -0.29
SMAD3-204ENST00000540846 RRM1P23921 792 aa13.21□□□□□ -0.29
SMAD3-204ENST00000540846 MCM3P25205 808 aa13.21□□□□□ -0.29
SMAD3-204ENST00000540846 CDH5P33151 784 aaPredicted RBP13.21□□□□□ -0.29
SMAD3-204ENST00000540846 PBX3P40426 434 aa13.21□□□□□ -0.29
SMAD3-204ENST00000540846 BRCC3P46736 316 aa13.21□□□□□ -0.29
SMAD3-204ENST00000540846 CDH8P55286 799 aa13.21□□□□□ -0.29
SMAD3-204ENST00000540846 INCA1Q0VD86 236 aa13.21□□□□□ -0.29
SMAD3-204ENST00000540846 PTP4A2Q12974 167 aa13.21□□□□□ -0.29
SMAD3-204ENST00000540846 LAMA3Q16787 3333 aa13.21□□□□□ -0.29
SMAD3-204ENST00000540846 LIN9Q5TKA1 542 aa13.21□□□□□ -0.29
SMAD3-204ENST00000540846 FAM109BQ6ICB4 259 aaPredicted RBP13.21□□□□□ -0.29
SMAD3-204ENST00000540846 DCLRE1AQ6PJP8 1040 aa13.21□□□□□ -0.29
SMAD3-204ENST00000540846 PASD1Q8IV76 773 aa13.21□□□□□ -0.29
SMAD3-204ENST00000540846 WHAMMQ8TF30 809 aa13.21□□□□□ -0.29
SMAD3-204ENST00000540846 CD101Q93033 1021 aa13.21□□□□□ -0.29
SMAD3-204ENST00000540846 ZSWIM1Q9BR11 485 aa13.21□□□□□ -0.29
SMAD3-204ENST00000540846 ZNF518BQ9C0D4 1074 aa13.21□□□□□ -0.29
SMAD3-204ENST00000540846 HMGXB4Q9UGU5 601 aa13.21□□□□□ -0.29
SMAD3-204ENST00000540846 CHORDC1Q9UHD1 332 aaPredicted RBP13.21□□□□□ -0.29
SMAD3-204ENST00000540846 L1RE1Q9UN81 338 aa13.21□□□□□ -0.29
SMAD3-204ENST00000540846 SNX9Q9Y5X1 595 aa13.21□□□□□ -0.29
SMAD3-204ENST00000540846 I3L4J1 428 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 RRP9O43818 475 aaKnown RBP13.2□□□□□ -0.3
SMAD3-204ENST00000540846 CILPO75339 1184 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 ERLIN1O75477 346 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 COMTP21964 271 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 MMP8P22894 467 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 BRD2P25440 801 aaKnown RBP13.2□□□□□ -0.3
SMAD3-204ENST00000540846 OR1G1P47890 313 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 BCAR1P56945 870 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 GLE1Q53GS7 698 aaKnown RBP13.2□□□□□ -0.3
SMAD3-204ENST00000540846 DCAF12L1Q5VU92 463 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 TTC39CQ8N584 583 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 HASPINQ8TF76 798 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 TFAP2BQ92481 460 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 SUSD3Q96L08 255 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 SENP8Q96LD8 212 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 YME1L1Q96TA2 773 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 MRPL45Q9BRJ2 306 aaKnown RBP13.2□□□□□ -0.3
SMAD3-204ENST00000540846 ARFGAP3Q9NP61 516 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 ADAM22Q9P0K1 906 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 PRG3Q9Y2Y8 225 aaPredicted RBP13.2□□□□□ -0.3
SMAD3-204ENST00000540846 PTPRDP23468 1912 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 LCHNA4D1U4 455 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 PAX3P23760 479 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 CTNNA2P26232 953 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 CTNNA1P35221 906 aaKnown RBP13.2□□□□□ -0.3
SMAD3-204ENST00000540846 RAD23BP54727 409 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 TNNC1P63316 161 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 BTG3Q14201 252 aaPredicted RBP13.2□□□□□ -0.3
SMAD3-204ENST00000540846 MESDQ14696 234 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 C8orf74Q6P047 294 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 DPH6Q7L8W6 267 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 RNF168Q8IYW5 571 aaPredicted RBP13.2□□□□□ -0.3
SMAD3-204ENST00000540846 TOP6BLQ8N6T0 577 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 UBL4BQ8N7F7 174 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 TMEM35BQ8NCS4 154 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms