RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 BCAS4Q8TDM0 211 aa14.52□□□□□ -0.08
RTN3-210ENST00000540798 NKD2Q969F2 451 aaPredicted RBP14.52□□□□□ -0.08
RTN3-210ENST00000540798 CCDC114Q96M63 670 aa14.52□□□□□ -0.08
RTN3-210ENST00000540798 SCLT1Q96NL6 688 aa14.52□□□□□ -0.08
RTN3-210ENST00000540798 DOCK3Q8IZD9 2030 aa14.52□□□□□ -0.09
RTN3-210ENST00000540798 CELF2O95319 508 aaKnown RBP14.52□□□□□ -0.09
RTN3-210ENST00000540798 PSMA2P25787 234 aa14.52□□□□□ -0.09
RTN3-210ENST00000540798 HPDP32754 393 aaPredicted RBP14.52□□□□□ -0.09
RTN3-210ENST00000540798 KIZQ2M2Z5 673 aa14.52□□□□□ -0.09
RTN3-210ENST00000540798 C6orf118Q5T5N4 469 aa14.52□□□□□ -0.09
RTN3-210ENST00000540798 HIBCHQ6NVY1 386 aaPredicted RBP14.52□□□□□ -0.09
RTN3-210ENST00000540798 SLC27A1Q6PCB7 646 aa14.52□□□□□ -0.09
RTN3-210ENST00000540798 ALLCQ8N6M5 410 aa14.52□□□□□ -0.09
RTN3-210ENST00000540798 USP6NLQ92738 828 aa14.52□□□□□ -0.09
RTN3-210ENST00000540798 GCOM2Q9BZD3 368 aaPredicted RBP14.52□□□□□ -0.09
RTN3-210ENST00000540798 ROPN1BQ9BZX4 212 aaPredicted RBP14.52□□□□□ -0.09
RTN3-210ENST00000540798 CXCL16Q9H2A7 254 aa14.52□□□□□ -0.09
RTN3-210ENST00000540798 RASSF4Q9H2L5 321 aa14.52□□□□□ -0.09
RTN3-210ENST00000540798 ROPN1Q9HAT0 212 aaPredicted RBP14.52□□□□□ -0.09
RTN3-210ENST00000540798 HAS3O00219 553 aa14.51□□□□□ -0.09
RTN3-210ENST00000540798 ZNF865P0CJ78 1059 aaPredicted RBP14.51□□□□□ -0.09
RTN3-210ENST00000540798 IL1R2P27930 398 aa14.51□□□□□ -0.09
RTN3-210ENST00000540798 NDST1P52848 882 aa14.51□□□□□ -0.09
RTN3-210ENST00000540798 MAP2K5Q13163 448 aa14.51□□□□□ -0.09
RTN3-210ENST00000540798 CCHCR1Q8TD31 782 aa14.51□□□□□ -0.09
RTN3-210ENST00000540798 KIF12Q96FN5 646 aa14.51□□□□□ -0.09
RTN3-210ENST00000540798 CDHR5Q9HBB8 845 aa14.51□□□□□ -0.09
RTN3-210ENST00000540798 ANAPC5Q9UJX4 755 aa14.51□□□□□ -0.09
RTN3-210ENST00000540798 DNPEPQ9ULA0 475 aa14.51□□□□□ -0.09
RTN3-210ENST00000540798 GOLGA8SH3BPF8 625 aa14.51□□□□□ -0.09
RTN3-210ENST00000540798 NPTXRO95502 500 aa14.51□□□□□ -0.09
RTN3-210ENST00000540798 PFKMP08237 780 aa14.51□□□□□ -0.09
RTN3-210ENST00000540798 HIC1Q14526 733 aa14.51□□□□□ -0.09
RTN3-210ENST00000540798 APBB1IPQ7Z5R6 666 aaPredicted RBP14.51□□□□□ -0.09
RTN3-210ENST00000540798 ZMAT2Q96NC0 199 aaKnown RBP14.51□□□□□ -0.09
RTN3-210ENST00000540798 FAM118BQ9BPY3 351 aa14.51□□□□□ -0.09
RTN3-210ENST00000540798 CNOT10Q9H9A5 744 aaKnown RBP14.51□□□□□ -0.09
RTN3-210ENST00000540798 METTL5Q9NRN9 209 aaKnown RBP14.51□□□□□ -0.09
RTN3-210ENST00000540798 FLRT1Q9NZU1 646 aa14.51□□□□□ -0.09
RTN3-210ENST00000540798 M0QYV0 167 aa14.5□□□□□ -0.09
RTN3-210ENST00000540798 AGTP01019 485 aa14.5□□□□□ -0.09
RTN3-210ENST00000540798 KRT7P08729 469 aa14.5□□□□□ -0.09
RTN3-210ENST00000540798 ADCY8P40145 1251 aa14.5□□□□□ -0.09
RTN3-210ENST00000540798 TRIP13Q15645 432 aaPredicted RBP14.5□□□□□ -0.09
RTN3-210ENST00000540798 PKDCCQ504Y2 493 aa14.5□□□□□ -0.09
RTN3-210ENST00000540798 SLC35B2Q8TB61 432 aa14.5□□□□□ -0.09
RTN3-210ENST00000540798 FOXP3Q9BZS1 431 aa14.5□□□□□ -0.09
RTN3-210ENST00000540798 ADAM7Q9H2U9 754 aa14.5□□□□□ -0.09
RTN3-210ENST00000540798 CNTN3Q9P232 1028 aa14.5□□□□□ -0.09
RTN3-210ENST00000540798 TCEA3O75764 348 aa14.5□□□□□ -0.09
RTN3-210ENST00000540798 ITGAVP06756 1048 aa14.5□□□□□ -0.09
RTN3-210ENST00000540798 DARSP14868 501 aaKnown RBP14.5□□□□□ -0.09
RTN3-210ENST00000540798 MMP13P45452 471 aa14.5□□□□□ -0.09
RTN3-210ENST00000540798 VCPP55072 806 aaKnown RBP14.5□□□□□ -0.09
RTN3-210ENST00000540798 CCDC142Q17RM4 750 aa14.5□□□□□ -0.09
RTN3-210ENST00000540798 ZNF365Q70YC5 407 aa14.5□□□□□ -0.09
RTN3-210ENST00000540798 CENPTQ96BT3 561 aa14.5□□□□□ -0.09
RTN3-210ENST00000540798 FRMD8P1Q9BZ68 369 aaPredicted RBP14.5□□□□□ -0.09
RTN3-210ENST00000540798 TTC4O95801 387 aa14.5□□□□□ -0.09
RTN3-210ENST00000540798 STILQ15468 1287 aa14.5□□□□□ -0.09
RTN3-210ENST00000540798 OLFML2BQ68BL8 750 aa14.5□□□□□ -0.09
RTN3-210ENST00000540798 LRRC52Q8N7C0 313 aa14.5□□□□□ -0.09
RTN3-210ENST00000540798 HEXIM2Q96MH2 286 aaKnown RBP14.5□□□□□ -0.09
RTN3-210ENST00000540798 DDX23Q9BUQ8 820 aaKnown RBP14.5□□□□□ -0.09
RTN3-210ENST00000540798 NT5C1AQ9BXI3 368 aa14.5□□□□□ -0.09
RTN3-210ENST00000540798 EIF2AQ9BY44 585 aaKnown RBP14.5□□□□□ -0.09
RTN3-210ENST00000540798 SNTG2Q9NY99 539 aa14.5□□□□□ -0.09
RTN3-210ENST00000540798 DYNC1LI2O43237 492 aaPredicted RBP14.49□□□□□ -0.09
RTN3-210ENST00000540798 ATF7P17544 494 aaPredicted RBP14.49□□□□□ -0.09
RTN3-210ENST00000540798 AXLP30530 894 aa14.49□□□□□ -0.09
RTN3-210ENST00000540798 MYO1EQ12965 1108 aa14.49□□□□□ -0.09
RTN3-210ENST00000540798 AUHQ13825 339 aaKnown RBP14.49□□□□□ -0.09
RTN3-210ENST00000540798 IZUMO3Q5VZ72 239 aa14.49□□□□□ -0.09
RTN3-210ENST00000540798 CST9Q5W186 159 aa14.49□□□□□ -0.09
RTN3-210ENST00000540798 KAZNQ674X7 775 aa14.49□□□□□ -0.09
RTN3-210ENST00000540798 NOTUMQ6P988 496 aa14.49□□□□□ -0.09
RTN3-210ENST00000540798 SRLQ86TD4 932 aa14.49□□□□□ -0.09
RTN3-210ENST00000540798 ZCCHC9Q8N567 271 aaKnown RBP14.49□□□□□ -0.09
RTN3-210ENST00000540798 CMASQ8NFW8 434 aaPredicted RBP14.49□□□□□ -0.09
RTN3-210ENST00000540798 EPS8L3Q8TE67 593 aaKnown RBP14.49□□□□□ -0.09
RTN3-210ENST00000540798 MYCBPQ99417 103 aaPredicted RBP14.49□□□□□ -0.09
RTN3-210ENST00000540798 NME7Q9Y5B8 376 aa14.49□□□□□ -0.09
RTN3-210ENST00000540798 LRRD1A4D1F6 860 aa14.49□□□□□ -0.09
RTN3-210ENST00000540798 KDELR1P24390 212 aa14.49□□□□□ -0.09
RTN3-210ENST00000540798 PCK1P35558 622 aa14.49□□□□□ -0.09
RTN3-210ENST00000540798 MFSD10Q14728 455 aa14.49□□□□□ -0.09
RTN3-210ENST00000540798 HADHQ16836 314 aaKnown RBP14.49□□□□□ -0.09
RTN3-210ENST00000540798 PRAMEF19Q5SWL8 479 aa14.49□□□□□ -0.09
RTN3-210ENST00000540798 ICE2Q659A1 982 aa14.49□□□□□ -0.09
RTN3-210ENST00000540798 GLIS1Q8NBF1 620 aa14.49□□□□□ -0.09
RTN3-210ENST00000540798 ACSF2Q96CM8 615 aaPredicted RBP14.49□□□□□ -0.09
RTN3-210ENST00000540798 CPA4Q9UI42 421 aa14.49□□□□□ -0.09
RTN3-210ENST00000540798 DNALI1O14645 258 aaPredicted RBP14.48□□□□□ -0.09
RTN3-210ENST00000540798 TRAPPC3O43617 180 aa14.48□□□□□ -0.09
RTN3-210ENST00000540798 HOXC8P31273 242 aa14.48□□□□□ -0.09
RTN3-210ENST00000540798 ZNF143P52747 638 aaPredicted RBP14.48□□□□□ -0.09
RTN3-210ENST00000540798 XKR4Q5GH76 650 aa14.48□□□□□ -0.09
RTN3-210ENST00000540798 BBS12Q6ZW61 710 aa14.48□□□□□ -0.09
RTN3-210ENST00000540798 CYP4V2Q6ZWL3 525 aaPredicted RBP14.48□□□□□ -0.09
RTN3-210ENST00000540798 CATSPER4Q7RTX7 472 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms