RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-208	ENST00000540447	SGF29	Q96ES7	293 aa		9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	DNAJC1	Q96KC8	554 aa	Known RBP	9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	ILKAP	Q9H0C8	392 aa	Predicted RBP	9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	AP4B1	Q9Y6B7	739 aa		9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	PRG4	Q92954	1404 aa	Predicted RBP	9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	MYCL	P12524	364 aa	Predicted RBP	9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	EIF4B	P23588	611 aa	Known RBP	9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	NAMPT	P43490	491 aa		9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	TMC3	Q7Z5M5	1100 aa		9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	LCORL	Q8N3X6	602 aa		9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	DLG3	Q92796	817 aa		9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	ULK4	Q96C45	1275 aa		9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	GDF3	Q9NR23	364 aa		9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	GGA1	Q9UJY5	639 aa		9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	ATF6	P18850	670 aa		9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	RPA1	P27694	616 aa		9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	MRPS22	P82650	360 aa	Known RBP	9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	CHRND	Q07001	517 aa		9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	TCIRG1	Q13488	830 aa		9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	DGKK	Q5KSL6	1271 aa		9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	GALNT18	Q6P9A2	607 aa		9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	CCNJL	Q8IV13	435 aa		9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	LSM14A	Q8ND56	463 aa	Known RBP	9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	SHCBP1	Q8NEM2	672 aa		9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	RNFT2	Q96EX2	444 aa		9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	EMILIN2	Q9BXX0	1053 aa		9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	TASP1	Q9H6P5	420 aa		9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	STARD13	Q9Y3M8	1113 aa		9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	CAPN6	Q9Y6Q1	641 aa		9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	AFF2	P51816	1311 aa		9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	HUS1	O60921	280 aa		9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	CFB	P00751	764 aa		9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	ASS1	P00966	412 aa	Known RBP	9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	CDO1	Q16878	200 aa		9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	ANKRD40	Q6AI12	368 aa		9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	CYP4V2	Q6ZWL3	525 aa	Predicted RBP	9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	SATL1	Q86VE3	508 aa		9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	TDRD5	Q8NAT2	981 aa	Known RBP	9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	SH3TC2	Q8TF17	1288 aa		9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	TBRG4	Q969Z0	631 aa	Known RBP eCLIP	9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	PGM2	Q96G03	612 aa		9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	RBBP8	Q99708	897 aa		9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	PLEKHA5	Q9HAU0	1116 aa		9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	TRMT13	Q9NUP7	481 aa	Known RBP	9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	EIF2AK4	Q9P2K8	1649 aa	Known RBP	9.09	□□□□□ -0.95
YBX3-208	ENST00000540447	PVALEF	A0A1B0GWK0	134 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	HNRNPDL	O14979	420 aa	Known RBP	9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	FYN	P06241	537 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	CYP11B2	P19099	503 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	PRKACB	P22694	351 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	CCND2	P30279	289 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	ATP12A	P54707	1039 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	FUT11	Q495W5	492 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	OTUD3	Q5T2D3	398 aa	Predicted RBP	9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	FBXW8	Q8N3Y1	598 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	OTUB1	Q96FW1	271 aa	Predicted RBP	9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	C11orf70	Q9BRQ4	267 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	C14orf93	Q9H972	538 aa	Known RBP	9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	H2AFY2	Q9P0M6	372 aa	Predicted RBP	9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	UVRAG	Q9P2Y5	699 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	DUSP10	Q9Y6W6	482 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	RTN2	O75298	545 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	PABPC1	P11940	636 aa	Known RBP	9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	ME2	P23368	584 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	FNTA	P49354	379 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	DGCR6	Q14129	220 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	PGBD2	Q6P3X8	592 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	EXOC3L1	Q86VI1	746 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	FBXO25	Q8TCJ0	367 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	TOR3A	Q9H497	397 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	BABAM1	Q9NWV8	329 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	BFAR	Q9NZS9	450 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	BMP10	O95393	424 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	CD58	P19256	250 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	ACADVL	P49748	655 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	ZNF544	Q6NX49	715 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	TTI2	Q6NXR4	508 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	ABRAXAS1	Q6UWZ7	409 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	RTKN2	Q8IZC4	609 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	KCTD17	Q8N5Z5	321 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	POU5F2	Q8N7G0	328 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	TBCK	Q8TEA7	893 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	AGPAT1	Q99943	283 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	BDH2	Q9BUT1	245 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	TBCCD1	Q9NVR7	557 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	NAALADL1	Q9UQQ1	740 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	TRIM64	A6NGJ6	449 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	TRIM64B	A6NI03	449 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447		E9PBE3	544 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447		F5H423	210 aa	Predicted RBP	9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	FARP2	O94887	1054 aa	Predicted RBP	9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	APOL3	O95236	402 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	IFI30	P13284	250 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	SLC26A3	P40879	764 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	ITGA1	P56199	1179 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	EIF3E	P60228	445 aa	Known RBP	9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	LSM3	P62310	102 aa	Known RBP	9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	HERVK_113	P62684	666 aa		9.08	□□□□□ -0.96
YBX3-208	ENST00000540447	TOP3A	Q13472	1001 aa	Predicted RBP	9.08	□□□□□ -0.96

Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms