RNA–Protein interactions for RNA: ENST00000538239.5

LRP6-203, Transcript of LDL receptor related protein 6, humanhuman

TSL 1 (best)

Gene LRP6, Length 7,812 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRP6-203ENST00000538239 ITGA11Q9UKX5 1188 aa5.6□□□□□ -1.51
LRP6-203ENST00000538239 FAM187AA6NFU0 413 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 LACTBL1A8MY62 500 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 CST8O60676 142 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 ZNF189O75820 626 aaPredicted RBP5.59□□□□□ -1.51
LRP6-203ENST00000538239 GARTP22102 1010 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 PON1P27169 355 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 IFNA8P32881 189 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 ARHGDIAP52565 204 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 USP10Q14694 798 aaKnown RBP5.59□□□□□ -1.51
LRP6-203ENST00000538239 DENND5BQ6ZUT9 1274 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 FAM71DQ8N9W8 422 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 DDX27Q96GQ7 796 aaKnown RBP5.59□□□□□ -1.51
LRP6-203ENST00000538239 TMEM176AQ96HP8 235 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 PKNOX2Q96KN3 472 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 SYT15Q9BQS2 421 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 HTATIP2Q9BUP3 242 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 TRIM55Q9BYV6 548 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 TRIM15Q9C019 465 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 MRPL46Q9H2W6 279 aaKnown RBP5.59□□□□□ -1.51
LRP6-203ENST00000538239 SNCAIPQ9Y6H5 919 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 ZBTB39O15060 712 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 CABYRO75952 493 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 CHRM3P20309 590 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 UBA1P22314 1058 aaKnown RBP5.59□□□□□ -1.51
LRP6-203ENST00000538239 MLH1P40692 756 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 TOB1P50616 345 aaPredicted RBP5.59□□□□□ -1.51
LRP6-203ENST00000538239 NAB2Q15742 525 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 NUDCD3Q8IVD9 361 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 CAPNS2Q96L46 248 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 EML4Q9HC35 981 aaKnown RBP5.59□□□□□ -1.51
LRP6-203ENST00000538239 PLA2G4CQ9UP65 541 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 AP3B1O00203 1094 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 CBX4O00257 560 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 PHF2O75151 1096 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 MCF2P10911 925 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 MZF1P28698 734 aaPredicted RBP5.59□□□□□ -1.51
LRP6-203ENST00000538239 FLT3LGP49771 235 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 ELAVL2Q12926 359 aaKnown RBP5.59□□□□□ -1.51
LRP6-203ENST00000538239 RBM23Q86U06 439 aaKnown RBP5.59□□□□□ -1.51
LRP6-203ENST00000538239 GBP7Q8N8V2 638 aaPredicted RBP5.59□□□□□ -1.51
LRP6-203ENST00000538239 TRIM45Q9H8W5 580 aaPredicted RBP5.59□□□□□ -1.51
LRP6-203ENST00000538239 CAPN10Q9HC96 672 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 CYP39A1Q9NYL5 469 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 XYLBO75191 536 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 SFSWAPQ12872 951 aaKnown RBP5.59□□□□□ -1.51
LRP6-203ENST00000538239 ZNF720Q7Z2F6 126 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 ZNF410Q86VK4 478 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 OOSP2Q86WS3 158 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 MIPOL1Q8TD10 442 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 ELAC2Q9BQ52 826 aaKnown RBP5.59□□□□□ -1.51
LRP6-203ENST00000538239 SMYD3Q9H7B4 428 aa5.59□□□□□ -1.51
LRP6-203ENST00000538239 CLNS1AP54105 237 aaKnown RBP5.59□□□□□ -1.52
LRP6-203ENST00000538239 MAGOHP61326 146 aaKnown RBP5.59□□□□□ -1.52
LRP6-203ENST00000538239 MRPS6P82932 125 aaKnown RBP5.59□□□□□ -1.52
LRP6-203ENST00000538239 DHX34Q14147 1143 aaKnown RBP5.59□□□□□ -1.52
LRP6-203ENST00000538239 LRRC14Q15048 493 aa5.59□□□□□ -1.52
LRP6-203ENST00000538239 KCNT1Q5JUK3 1230 aa5.59□□□□□ -1.52
LRP6-203ENST00000538239 PKN3Q6P5Z2 889 aa5.59□□□□□ -1.52
LRP6-203ENST00000538239 C16orf59Q7L2K0 433 aa5.59□□□□□ -1.52
LRP6-203ENST00000538239 OTOP1Q7RTM1 612 aa5.59□□□□□ -1.52
LRP6-203ENST00000538239 SLFN11Q7Z7L1 901 aa5.59□□□□□ -1.52
LRP6-203ENST00000538239 FAM172AQ8WUF8 416 aa5.59□□□□□ -1.52
LRP6-203ENST00000538239 SLC5A5Q92911 643 aa5.59□□□□□ -1.52
LRP6-203ENST00000538239 SERPINI1Q99574 410 aa5.59□□□□□ -1.52
LRP6-203ENST00000538239 THAP2Q9H0W7 228 aa5.59□□□□□ -1.52
LRP6-203ENST00000538239 TAF1DQ9H5J8 278 aaPredicted RBP5.59□□□□□ -1.52
LRP6-203ENST00000538239 MRPL17Q9NRX2 175 aaKnown RBP5.59□□□□□ -1.52
LRP6-203ENST00000538239 ZC3H7BQ9UGR2 993 aaKnown RBP5.59□□□□□ -1.52
LRP6-203ENST00000538239 DCTN4Q9UJW0 460 aa5.59□□□□□ -1.52
LRP6-203ENST00000538239 SIPA1L2Q9P2F8 1722 aaPredicted RBP5.59□□□□□ -1.52
LRP6-203ENST00000538239 HMGB1P1B2RPK0 211 aaPredicted RBP5.59□□□□□ -1.52
LRP6-203ENST00000538239 TLL1O43897 1013 aa5.59□□□□□ -1.52
LRP6-203ENST00000538239 RHOBTB1O94844 696 aa5.59□□□□□ -1.52
LRP6-203ENST00000538239 CCDC130P13994 396 aa5.59□□□□□ -1.52
LRP6-203ENST00000538239 FXR1P51114 621 aaKnown RBP eCLIP5.59□□□□□ -1.52
LRP6-203ENST00000538239 BYSLQ13895 437 aaKnown RBP5.59□□□□□ -1.52
LRP6-203ENST00000538239 NR1I3Q14994 352 aa5.59□□□□□ -1.52
LRP6-203ENST00000538239 SGO1Q5FBB7 561 aa5.59□□□□□ -1.52
LRP6-203ENST00000538239 FAXCQ5TGI0 409 aa5.59□□□□□ -1.52
LRP6-203ENST00000538239 ZC3H15Q8WU90 426 aaKnown RBP5.59□□□□□ -1.52
LRP6-203ENST00000538239 LPPQ93052 612 aa5.59□□□□□ -1.52
LRP6-203ENST00000538239 EFHD1Q9BUP0 239 aa5.59□□□□□ -1.52
LRP6-203ENST00000538239 GOLPH3Q9H4A6 298 aa5.59□□□□□ -1.52
LRP6-203ENST00000538239 CISHQ9NSE2 258 aa5.59□□□□□ -1.52
LRP6-203ENST00000538239 SMARCAL1Q9NZC9 954 aa5.59□□□□□ -1.52
LRP6-203ENST00000538239 TPX2Q9ULW0 747 aaKnown RBP5.59□□□□□ -1.52
LRP6-203ENST00000538239 CHMP2BQ9UQN3 213 aa5.59□□□□□ -1.52
LRP6-203ENST00000538239 FAM95CA0A1B0GW59 222 aa5.58□□□□□ -1.52
LRP6-203ENST00000538239 CFAP99D6REC4 459 aa5.58□□□□□ -1.52
LRP6-203ENST00000538239 AGRPO00253 132 aa5.58□□□□□ -1.52
LRP6-203ENST00000538239 SLITRK3O94933 977 aa5.58□□□□□ -1.52
LRP6-203ENST00000538239 MAPK9P45984 424 aa5.58□□□□□ -1.52
LRP6-203ENST00000538239 CLCN6P51797 869 aa5.58□□□□□ -1.52
LRP6-203ENST00000538239 LAMB3Q13751 1172 aa5.58□□□□□ -1.52
LRP6-203ENST00000538239 EFTUD2Q15029 972 aaKnown RBP eCLIP5.58□□□□□ -1.52
LRP6-203ENST00000538239 FSCBQ5H9T9 825 aa5.58□□□□□ -1.52
LRP6-203ENST00000538239 C7orf61Q8IZ16 206 aa5.58□□□□□ -1.52
LRP6-203ENST00000538239 VGLL2Q8N8G2 317 aa5.58□□□□□ -1.52
LRP6-203ENST00000538239 HELQQ8TDG4 1101 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms