RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 PADI4Q9UM07 663 aa3.47□□□□□ -1.85
CD44-238ENST00000534296 EID1Q9Y6B2 187 aa3.47□□□□□ -1.85
CD44-238ENST00000534296 WDR27A2RRH5 827 aa3.46□□□□□ -1.86
CD44-238ENST00000534296 MGST3O14880 152 aa3.46□□□□□ -1.86
CD44-238ENST00000534296 DNAJB5O75953 348 aa3.46□□□□□ -1.86
CD44-238ENST00000534296 DLDP09622 509 aaKnown RBP3.46□□□□□ -1.86
CD44-238ENST00000534296 CDK4P11802 303 aa3.46□□□□□ -1.86
CD44-238ENST00000534296 SLC7A1P30825 629 aa3.46□□□□□ -1.86
CD44-238ENST00000534296 PDE6CP51160 858 aa3.46□□□□□ -1.86
CD44-238ENST00000534296 AGFG1P52594 562 aaKnown RBP3.46□□□□□ -1.86
CD44-238ENST00000534296 PRKAG1P54619 331 aa3.46□□□□□ -1.86
CD44-238ENST00000534296 PDE1AP54750 535 aa3.46□□□□□ -1.86
CD44-238ENST00000534296 UCP3P55916 312 aa3.46□□□□□ -1.86
CD44-238ENST00000534296 TPTEP56180 551 aa3.46□□□□□ -1.86
CD44-238ENST00000534296 SLC13A2Q13183 592 aa3.46□□□□□ -1.86
CD44-238ENST00000534296 NFE2Q16621 373 aaPredicted RBP3.46□□□□□ -1.86
CD44-238ENST00000534296 CCDC142Q17RM4 750 aa3.46□□□□□ -1.86
CD44-238ENST00000534296 VPS53Q5VIR6 699 aa3.46□□□□□ -1.86
CD44-238ENST00000534296 KIAA1614Q5VZ46 1190 aa3.46□□□□□ -1.86
CD44-238ENST00000534296 RGS7BPQ6MZT1 257 aaPredicted RBP3.46□□□□□ -1.86
CD44-238ENST00000534296 CEP85Q6P2H3 762 aa3.46□□□□□ -1.86
CD44-238ENST00000534296 ANKRD16Q6P6B7 361 aa3.46□□□□□ -1.86
CD44-238ENST00000534296 B3GNT9Q6UX72 402 aa3.46□□□□□ -1.86
CD44-238ENST00000534296 NOL8Q76FK4 1167 aaKnown RBP3.46□□□□□ -1.86
CD44-238ENST00000534296 DTX2Q86UW9 622 aa3.46□□□□□ -1.86
CD44-238ENST00000534296 WDR75Q8IWA0 830 aaKnown RBP3.46□□□□□ -1.86
CD44-238ENST00000534296 TCEAL8Q8IYN2 117 aa3.46□□□□□ -1.86
CD44-238ENST00000534296 FAM109AQ8N4B1 249 aa3.46□□□□□ -1.86
CD44-238ENST00000534296 LRRC71Q8N4P6 559 aa3.46□□□□□ -1.86
CD44-238ENST00000534296 PPP1R35Q8TAP8 253 aa3.46□□□□□ -1.86
CD44-238ENST00000534296 B3GNT5Q9BYG0 378 aa3.46□□□□□ -1.86
CD44-238ENST00000534296 TRIM54Q9BYV2 358 aa3.46□□□□□ -1.86
CD44-238ENST00000534296 TMEM60Q9H2L4 133 aa3.46□□□□□ -1.86
CD44-238ENST00000534296 IL17RBQ9NRM6 502 aa3.46□□□□□ -1.86
CD44-238ENST00000534296 SERTAD3Q9UJW9 196 aa3.46□□□□□ -1.86
CD44-238ENST00000534296 CFAP69A5D8W1 941 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 PSMD9O00233 223 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 BTN3A1O00481 513 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 PPM1DO15297 605 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 MGEA5O60502 916 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 TUSC2O75896 110 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 KITP10721 976 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 PTH2RP49190 550 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 SLC11A2P49281 568 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 MTHFSP49914 203 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 HNRNPMP52272 730 aaKnown RBP eCLIP3.45□□□□□ -1.86
CD44-238ENST00000534296 ZNF134P52741 427 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 C21orf58P58505 322 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 NHLH1Q02575 133 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 MLC1Q15049 377 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 GFOD2Q3B7J2 385 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 NPNTQ6UXI9 565 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 MAEAQ7L5Y9 396 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 SRGAP1Q7Z6B7 1085 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 RASAL3Q86YV0 1011 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 SPARTQ8N0X7 666 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 MYO1HQ8N1T3 1032 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 SLC15A4Q8N697 577 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 DNAJC5GQ8N7S2 189 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 MAGEB6Q8N7X4 407 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 FANCBQ8NB91 859 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 PLBD2Q8NHP8 589 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 HASPINQ8TF76 798 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 OSCP1Q8WVF1 389 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 TBC1D5Q92609 795 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 RUNDC1Q96C34 613 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 MRGPRX1Q96LB2 322 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 P2RX7Q99572 595 aaKnown RBP3.45□□□□□ -1.86
CD44-238ENST00000534296 ZNF518BQ9C0D4 1074 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 ANLNQ9NQW6 1124 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 SERTAD4Q9NUC0 356 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 MRPS18AQ9NVS2 196 aaKnown RBP3.45□□□□□ -1.86
CD44-238ENST00000534296 ARPP21Q9UBL0 812 aaPredicted RBP3.45□□□□□ -1.86
CD44-238ENST00000534296 TPCN1Q9ULQ1 816 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 ST3GAL5Q9UNP4 418 aa3.45□□□□□ -1.86
CD44-238ENST00000534296 THRAP3Q9Y2W1 955 aaKnown RBP3.45□□□□□ -1.86
CD44-238ENST00000534296 ZBTB32Q9Y2Y4 487 aaPredicted RBP3.45□□□□□ -1.86
CD44-238ENST00000534296 A0A087WWL8 130 aa3.44□□□□□ -1.86
CD44-238ENST00000534296 ISM1B1AKI9 464 aa3.44□□□□□ -1.86
CD44-238ENST00000534296 DCLK1O15075 740 aa3.44□□□□□ -1.86
CD44-238ENST00000534296 FRS3O43559 492 aa3.44□□□□□ -1.86
CD44-238ENST00000534296 JTBO76095 146 aa3.44□□□□□ -1.86
CD44-238ENST00000534296 PRKCBP05771 671 aa3.44□□□□□ -1.86
CD44-238ENST00000534296 HNRNPCP07910 306 aaKnown RBP eCLIP3.44□□□□□ -1.86
CD44-238ENST00000534296 NPSP0C0P6 89 aa3.44□□□□□ -1.86
CD44-238ENST00000534296 FAM163BP0C2L3 166 aa3.44□□□□□ -1.86
CD44-238ENST00000534296 BRAFP15056 766 aa3.44□□□□□ -1.86
CD44-238ENST00000534296 NPR1P16066 1061 aa3.44□□□□□ -1.86
CD44-238ENST00000534296 EN2P19622 333 aaPredicted RBP3.44□□□□□ -1.86
CD44-238ENST00000534296 DRD4P21917 467 aa3.44□□□□□ -1.86
CD44-238ENST00000534296 PRKAR1BP31321 381 aa3.44□□□□□ -1.86
CD44-238ENST00000534296 TOB1P50616 345 aaPredicted RBP3.44□□□□□ -1.86
CD44-238ENST00000534296 EEFSECP57772 596 aaKnown RBP3.44□□□□□ -1.86
CD44-238ENST00000534296 SLC10A2Q12908 348 aaPredicted RBP3.44□□□□□ -1.86
CD44-238ENST00000534296 INSCQ1MX18 579 aa3.44□□□□□ -1.86
CD44-238ENST00000534296 TBC1D25Q3MII6 688 aa3.44□□□□□ -1.86
CD44-238ENST00000534296 AARS2Q5JTZ9 985 aaKnown RBP3.44□□□□□ -1.86
CD44-238ENST00000534296 ZNF362Q5T0B9 420 aaPredicted RBP3.44□□□□□ -1.86
CD44-238ENST00000534296 TREML2Q5T2D2 321 aa3.44□□□□□ -1.86
CD44-238ENST00000534296 CCDC181Q5TID7 509 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms