RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 CDK11BP21127 795 aaKnown RBP15.4■□□□□ 0.06
CPSF1-206ENST00000531480 ZNF132P52740 706 aa15.4■□□□□ 0.06
CPSF1-206ENST00000531480 RAD23BP54727 409 aa15.4■□□□□ 0.06
CPSF1-206ENST00000531480 LRMPQ12912 555 aa15.4■□□□□ 0.06
CPSF1-206ENST00000531480 RARS2Q5T160 578 aaKnown RBP15.4■□□□□ 0.06
CPSF1-206ENST00000531480 VSTM1Q6UX27 236 aa15.4■□□□□ 0.06
CPSF1-206ENST00000531480 TMC5Q6UXY8 1006 aa15.4■□□□□ 0.06
CPSF1-206ENST00000531480 PAQR9Q6ZVX9 377 aa15.4■□□□□ 0.06
CPSF1-206ENST00000531480 PPM1KQ8N3J5 372 aa15.4■□□□□ 0.06
CPSF1-206ENST00000531480 SLC4A11Q8NBS3 891 aa15.4■□□□□ 0.06
CPSF1-206ENST00000531480 MYLPFQ96A32 169 aa15.4■□□□□ 0.06
CPSF1-206ENST00000531480 NECTIN4Q96NY8 510 aa15.4■□□□□ 0.06
CPSF1-206ENST00000531480 NAA15Q9BXJ9 866 aaKnown RBP15.4■□□□□ 0.06
CPSF1-206ENST00000531480 B3GNT5Q9BYG0 378 aa15.4■□□□□ 0.06
CPSF1-206ENST00000531480 CEP72Q9P209 647 aa15.4■□□□□ 0.06
CPSF1-206ENST00000531480 SIK3Q9Y2K2 1263 aa15.4■□□□□ 0.06
CPSF1-206ENST00000531480 DAAM1Q9Y4D1 1078 aa15.4■□□□□ 0.06
CPSF1-206ENST00000531480 USP15Q9Y4E8 981 aaPredicted RBP15.4■□□□□ 0.06
CPSF1-206ENST00000531480 DENND4CQ5VZ89 1909 aa15.39■□□□□ 0.05
CPSF1-206ENST00000531480 DOCK8Q8NF50 2099 aa15.39■□□□□ 0.05
CPSF1-206ENST00000531480 A0A1B0GTH6 734 aa15.39■□□□□ 0.05
CPSF1-206ENST00000531480 TNFRSF10AO00220 468 aa15.39■□□□□ 0.05
CPSF1-206ENST00000531480 PRRG1O14668 218 aa15.39■□□□□ 0.05
CPSF1-206ENST00000531480 ATF6P18850 670 aa15.39■□□□□ 0.05
CPSF1-206ENST00000531480 CD58P19256 250 aa15.39■□□□□ 0.05
CPSF1-206ENST00000531480 RFX1P22670 979 aa15.39■□□□□ 0.05
CPSF1-206ENST00000531480 CYP2F1P24903 491 aa15.39■□□□□ 0.05
CPSF1-206ENST00000531480 MTHFRP42898 656 aa15.39■□□□□ 0.05
CPSF1-206ENST00000531480 EPHA5P54756 1037 aa15.39■□□□□ 0.05
CPSF1-206ENST00000531480 APBA1Q02410 837 aa15.39■□□□□ 0.05
CPSF1-206ENST00000531480 PLD1Q13393 1074 aa15.39■□□□□ 0.05
CPSF1-206ENST00000531480 MDH1BQ5I0G3 518 aa15.39■□□□□ 0.05
CPSF1-206ENST00000531480 KLHDC7AQ5VTJ3 777 aa15.39■□□□□ 0.05
CPSF1-206ENST00000531480 CES5AQ6NT32 575 aa15.39■□□□□ 0.05
CPSF1-206ENST00000531480 EP400NLQ6ZTU2 488 aa15.39■□□□□ 0.05
CPSF1-206ENST00000531480 RRAGAQ7L523 313 aa15.39■□□□□ 0.05
CPSF1-206ENST00000531480 ACOT1Q86TX2 421 aa15.39■□□□□ 0.05
CPSF1-206ENST00000531480 FUKQ8N0W3 1084 aa15.39■□□□□ 0.05
CPSF1-206ENST00000531480 SHC3Q92529 594 aa15.39■□□□□ 0.05
CPSF1-206ENST00000531480 TMEM176AQ96HP8 235 aa15.39■□□□□ 0.05
CPSF1-206ENST00000531480 HNRNPABQ99729 332 aaKnown RBP15.39■□□□□ 0.05
CPSF1-206ENST00000531480 LPIN3Q9BQK8 851 aa15.39■□□□□ 0.05
CPSF1-206ENST00000531480 RTN4Q9NQC3 1192 aaKnown RBP15.39■□□□□ 0.05
CPSF1-206ENST00000531480 ABI2Q9NYB9 513 aaPredicted RBP15.39■□□□□ 0.05
CPSF1-206ENST00000531480 SLC27A5Q9Y2P5 690 aa15.39■□□□□ 0.05
CPSF1-206ENST00000531480 ASB3Q9Y575 518 aa15.39■□□□□ 0.05
CPSF1-206ENST00000531480 ZNF638Q14966 1978 aaKnown RBP15.38■□□□□ 0.05
CPSF1-206ENST00000531480 XYLBO75191 536 aa15.38■□□□□ 0.05
CPSF1-206ENST00000531480 NOL4O94818 638 aa15.38■□□□□ 0.05
CPSF1-206ENST00000531480 CLSTN1O94985 981 aa15.38■□□□□ 0.05
CPSF1-206ENST00000531480 PAEPP09466 180 aa15.38■□□□□ 0.05
CPSF1-206ENST00000531480 BMP1P13497 986 aa15.38■□□□□ 0.05
CPSF1-206ENST00000531480 MFAP3P55082 362 aa15.38■□□□□ 0.05
CPSF1-206ENST00000531480 TPM4P67936 248 aa15.38■□□□□ 0.05
CPSF1-206ENST00000531480 TWF1Q12792 350 aa15.38■□□□□ 0.05
CPSF1-206ENST00000531480 CBX2Q14781 532 aaPredicted RBP15.38■□□□□ 0.05
CPSF1-206ENST00000531480 ATAT1Q5SQI0 421 aa15.38■□□□□ 0.05
CPSF1-206ENST00000531480 FKBP15Q5T1M5 1219 aa15.38■□□□□ 0.05
CPSF1-206ENST00000531480 ARHGAP17Q68EM7 881 aa15.38■□□□□ 0.05
CPSF1-206ENST00000531480 PTCRAQ6ISU1 281 aaPredicted RBP15.38■□□□□ 0.05
CPSF1-206ENST00000531480 SPATA2LQ8IUW3 424 aaPredicted RBP15.38■□□□□ 0.05
CPSF1-206ENST00000531480 SMG7Q92540 1137 aaKnown RBP15.38■□□□□ 0.05
CPSF1-206ENST00000531480 SPATA17Q96L03 361 aa15.38■□□□□ 0.05
CPSF1-206ENST00000531480 RIPOR3Q96MK2 946 aa15.38■□□□□ 0.05
CPSF1-206ENST00000531480 LRRC3Q9BY71 257 aa15.38■□□□□ 0.05
CPSF1-206ENST00000531480 GANQ9H2C0 597 aa15.38■□□□□ 0.05
CPSF1-206ENST00000531480 CSNK1G1Q9HCP0 422 aa15.38■□□□□ 0.05
CPSF1-206ENST00000531480 WDR6Q9NNW5 1121 aaKnown RBP15.38■□□□□ 0.05
CPSF1-206ENST00000531480 UBE2TQ9NPD8 197 aaPredicted RBP15.38■□□□□ 0.05
CPSF1-206ENST00000531480 TMEM30AQ9NV96 361 aa15.38■□□□□ 0.05
CPSF1-206ENST00000531480 AJAP1Q9UKB5 411 aaPredicted RBP15.38■□□□□ 0.05
CPSF1-206ENST00000531480 KIAA1257Q9ULG3 409 aa15.38■□□□□ 0.05
CPSF1-206ENST00000531480 OBSL1O75147 1896 aa15.37■□□□□ 0.05
CPSF1-206ENST00000531480 MYH10P35580 1976 aa15.37■□□□□ 0.05
CPSF1-206ENST00000531480 RNF225M0QZC1 329 aaPredicted RBP15.37■□□□□ 0.05
CPSF1-206ENST00000531480 CCL16O15467 120 aa15.37■□□□□ 0.05
CPSF1-206ENST00000531480 LRG1P02750 347 aa15.37■□□□□ 0.05
CPSF1-206ENST00000531480 UCHL3P15374 230 aa15.37■□□□□ 0.05
CPSF1-206ENST00000531480 ALDH1A3P47895 512 aa15.37■□□□□ 0.05
CPSF1-206ENST00000531480 ORC1Q13415 861 aa15.37■□□□□ 0.05
CPSF1-206ENST00000531480 NR1I3Q14994 352 aa15.37■□□□□ 0.05
CPSF1-206ENST00000531480 CLUL1Q15846 466 aa15.37■□□□□ 0.05
CPSF1-206ENST00000531480 GJB7Q6PEY0 223 aa15.37■□□□□ 0.05
CPSF1-206ENST00000531480 FAM35AQ86V20 835 aa15.37■□□□□ 0.05
CPSF1-206ENST00000531480 C12orf29Q8N999 325 aa15.37■□□□□ 0.05
CPSF1-206ENST00000531480 PSMG2Q969U7 264 aa15.37■□□□□ 0.05
CPSF1-206ENST00000531480 C8orf48Q96LL4 319 aa15.37■□□□□ 0.05
CPSF1-206ENST00000531480 NAP1L5Q96NT1 182 aaPredicted RBP15.37■□□□□ 0.05
CPSF1-206ENST00000531480 ZNF518BQ9C0D4 1074 aa15.37■□□□□ 0.05
CPSF1-206ENST00000531480 GPR88Q9GZN0 384 aa15.37■□□□□ 0.05
CPSF1-206ENST00000531480 DNAI2Q9GZS0 605 aa15.37■□□□□ 0.05
CPSF1-206ENST00000531480 DNMT3BQ9UBC3 853 aaKnown RBP15.37■□□□□ 0.05
CPSF1-206ENST00000531480 CDH22Q9UJ99 828 aa15.37■□□□□ 0.05
CPSF1-206ENST00000531480 FAM50BQ9Y247 325 aa15.37■□□□□ 0.05
CPSF1-206ENST00000531480 A0A1W2PQC6 194 aa15.36■□□□□ 0.05
CPSF1-206ENST00000531480 GOLGA6L19H0YKK7 550 aa15.36■□□□□ 0.05
CPSF1-206ENST00000531480 TRIM66O15016 1216 aa15.36■□□□□ 0.05
CPSF1-206ENST00000531480 TEX33O43247 280 aa15.36■□□□□ 0.05
CPSF1-206ENST00000531480 SOAT2O75908 522 aa15.36■□□□□ 0.05
CPSF1-206ENST00000531480 MICAL2O94851 1124 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms