RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 LCLAT1Q6UWP7 414 aa22.45■■□□□ 1.18
VPS28-212ENST00000530836 ADGRF2Q8IZF7 708 aa22.45■■□□□ 1.18
VPS28-212ENST00000530836 NUP85Q9BW27 656 aa22.45■■□□□ 1.18
VPS28-212ENST00000530836 TLR10Q9BXR5 811 aa22.45■■□□□ 1.18
VPS28-212ENST00000530836 ZNF576Q9H609 170 aa22.45■■□□□ 1.18
VPS28-212ENST00000530836 TBC1D13Q9NVG8 400 aa22.45■■□□□ 1.18
VPS28-212ENST00000530836 AARSP49588 968 aaKnown RBP eCLIP22.44■■□□□ 1.181e-6■■■■■ 36.1
VPS28-212ENST00000530836 TUBB4BP68371 445 aa22.44■■□□□ 1.18
VPS28-212ENST00000530836 PEX26Q7Z412 305 aa22.44■■□□□ 1.18
VPS28-212ENST00000530836 ZNF564Q8TBZ8 553 aaPredicted RBP22.44■■□□□ 1.18
VPS28-212ENST00000530836 KBTBD7Q8WVZ9 684 aa22.44■■□□□ 1.18
VPS28-212ENST00000530836 TGS1Q96RS0 853 aaKnown RBP22.44■■□□□ 1.18
VPS28-212ENST00000530836 MIS12Q9H081 205 aa22.44■■□□□ 1.18
VPS28-212ENST00000530836 CWH43Q9H720 699 aa22.44■■□□□ 1.18
VPS28-212ENST00000530836 L1RE1Q9UN81 338 aa22.44■■□□□ 1.18
VPS28-212ENST00000530836 COG5Q9UP83 839 aa22.44■■□□□ 1.18
VPS28-212ENST00000530836 STXBP5LQ9Y2K9 1186 aa22.44■■□□□ 1.18
VPS28-212ENST00000530836 BUB1BO60566 1050 aaPredicted RBP22.43■■□□□ 1.18
VPS28-212ENST00000530836 ERVK-21P61565 698 aa22.43■■□□□ 1.18
VPS28-212ENST00000530836 PTP4A2Q12974 167 aa22.43■■□□□ 1.18
VPS28-212ENST00000530836 ARHGAP17Q68EM7 881 aa22.43■■□□□ 1.18
VPS28-212ENST00000530836 ERICH1Q86X53 443 aa22.43■■□□□ 1.18
VPS28-212ENST00000530836 C1orf131Q8NDD1 294 aaKnown RBP22.43■■□□□ 1.18
VPS28-212ENST00000530836 MNS1Q8NEH6 495 aa22.43■■□□□ 1.18
VPS28-212ENST00000530836 SENP8Q96LD8 212 aa22.43■■□□□ 1.18
VPS28-212ENST00000530836 C11orf70Q9BRQ4 267 aa22.43■■□□□ 1.18
VPS28-212ENST00000530836 ABCB6Q9NP58 842 aa22.43■■□□□ 1.18
VPS28-212ENST00000530836 PARVAQ9NVD7 372 aa22.43■■□□□ 1.18
VPS28-212ENST00000530836 RNF14Q9UBS8 474 aa22.43■■□□□ 1.18
VPS28-212ENST00000530836 AMFRQ9UKV5 643 aa22.43■■□□□ 1.18
VPS28-212ENST00000530836 MYH10P35580 1976 aa22.43■■□□□ 1.18
VPS28-212ENST00000530836 CES2O00748 559 aa22.42■■□□□ 1.18
VPS28-212ENST00000530836 MICAL2O94851 1124 aa22.42■■□□□ 1.18
VPS28-212ENST00000530836 FTCDO95954 541 aa22.42■■□□□ 1.18
VPS28-212ENST00000530836 RRM1P23921 792 aa22.42■■□□□ 1.18
VPS28-212ENST00000530836 LHX1P48742 406 aa22.42■■□□□ 1.18
VPS28-212ENST00000530836 CKAP4Q07065 602 aaKnown RBP22.42■■□□□ 1.18
VPS28-212ENST00000530836 RPS6KA1Q15418 735 aa22.42■■□□□ 1.18
VPS28-212ENST00000530836 PLEKHA7Q6IQ23 1121 aa22.42■■□□□ 1.18
VPS28-212ENST00000530836 DENND1BQ6P3S1 775 aa22.42■■□□□ 1.18
VPS28-212ENST00000530836 DCLRE1AQ6PJP8 1040 aa22.42■■□□□ 1.18
VPS28-212ENST00000530836 MMS22LQ6ZRQ5 1243 aa22.42■■□□□ 1.18
VPS28-212ENST00000530836 PDCL2Q8N4E4 241 aa22.42■■□□□ 1.18
VPS28-212ENST00000530836 OSBPL9Q96SU4 736 aa22.42■■□□□ 1.18
VPS28-212ENST00000530836 TTYH1Q9H313 450 aaPredicted RBP22.42■■□□□ 1.18
VPS28-212ENST00000530836 WDR35Q9P2L0 1181 aa22.42■■□□□ 1.18
VPS28-212ENST00000530836 HCSTQ9UBK5 93 aa22.42■■□□□ 1.18
VPS28-212ENST00000530836 RWDD3Q9Y3V2 267 aa22.42■■□□□ 1.18
VPS28-212ENST00000530836 CASTOR2A6NHX0 329 aa22.42■■□□□ 1.18
VPS28-212ENST00000530836 GABRDO14764 452 aa22.42■■□□□ 1.18
VPS28-212ENST00000530836 SETSIPP0DME0 302 aa22.42■■□□□ 1.18
VPS28-212ENST00000530836 BMPR1AP36894 532 aa22.42■■□□□ 1.18
VPS28-212ENST00000530836 SNX16P57768 344 aa22.42■■□□□ 1.18
VPS28-212ENST00000530836 RNASELQ05823 741 aaKnown RBP22.42■■□□□ 1.18
VPS28-212ENST00000530836 ORC1Q13415 861 aa22.42■■□□□ 1.18
VPS28-212ENST00000530836 DSTYKQ6XUX3 929 aa22.42■■□□□ 1.18
VPS28-212ENST00000530836 SPRED2Q7Z698 418 aa22.42■■□□□ 1.18
VPS28-212ENST00000530836 ACOT1Q86TX2 421 aa22.42■■□□□ 1.18
VPS28-212ENST00000530836 ZNF280BQ86YH2 543 aa22.42■■□□□ 1.18
VPS28-212ENST00000530836 WDTC1Q8N5D0 677 aa22.42■■□□□ 1.18
VPS28-212ENST00000530836 SAMD11Q96NU1 681 aa22.42■■□□□ 1.18
VPS28-212ENST00000530836 C17orf80Q9BSJ5 609 aa22.42■■□□□ 1.18
VPS28-212ENST00000530836 HESX1Q9UBX0 185 aa22.42■■□□□ 1.18
VPS28-212ENST00000530836 DSEQ9UL01 958 aa22.42■■□□□ 1.18
VPS28-212ENST00000530836 M0QYV0 167 aa22.41■■□□□ 1.18
VPS28-212ENST00000530836 B3GAT3O94766 335 aa22.41■■□□□ 1.18
VPS28-212ENST00000530836 ODC1P11926 461 aa22.41■■□□□ 1.18
VPS28-212ENST00000530836 SSTR3P32745 418 aaPredicted RBP22.41■■□□□ 1.18
VPS28-212ENST00000530836 GSCP56915 257 aaPredicted RBP22.41■■□□□ 1.18
VPS28-212ENST00000530836 SPOUT1Q5T280 376 aaKnown RBP22.41■■□□□ 1.18
VPS28-212ENST00000530836 ZNF697Q5TEC3 545 aa22.41■■□□□ 1.18
VPS28-212ENST00000530836 NT5DC3Q86UY8 548 aa22.41■■□□□ 1.18
VPS28-212ENST00000530836 RPGRIP1Q96KN7 1286 aa22.41■■□□□ 1.18
VPS28-212ENST00000530836 NRDE2Q9H7Z3 1164 aa22.41■■□□□ 1.18
VPS28-212ENST00000530836 AAASQ9NRG9 546 aa22.41■■□□□ 1.18
VPS28-212ENST00000530836 TSPAN16Q9UKR8 245 aa22.41■■□□□ 1.18
VPS28-212ENST00000530836 CHD7Q9P2D1 2997 aa22.41■■□□□ 1.18
VPS28-212ENST00000530836 MIF4GDA9UHW6 222 aaKnown RBP22.4■■□□□ 1.18
VPS28-212ENST00000530836 CTIFO43310 598 aaKnown RBP22.4■■□□□ 1.18
VPS28-212ENST00000530836 ATMINO43313 823 aaPredicted RBP22.4■■□□□ 1.18
VPS28-212ENST00000530836 DDHD2O94830 711 aa22.4■■□□□ 1.18
VPS28-212ENST00000530836 KIF4AO95239 1232 aa22.4■■□□□ 1.18
VPS28-212ENST00000530836 LAG3P18627 525 aa22.4■■□□□ 1.18
VPS28-212ENST00000530836 GPD2P43304 727 aa22.4■■□□□ 1.18
VPS28-212ENST00000530836 DSC1Q08554 894 aa22.4■■□□□ 1.18
VPS28-212ENST00000530836 FAM193BQ96PV7 902 aaPredicted RBP22.4■■□□□ 1.18
VPS28-212ENST00000530836 CARD6Q9BX69 1037 aa22.4■■□□□ 1.18
VPS28-212ENST00000530836 CERS4Q9HA82 394 aa22.4■■□□□ 1.18
VPS28-212ENST00000530836 MAMLD1Q13495 774 aa22.39■■□□□ 1.18
VPS28-212ENST00000530836 C18orf8Q96DM3 657 aa22.39■■□□□ 1.18
VPS28-212ENST00000530836 HES6Q96HZ4 224 aa22.39■■□□□ 1.18
VPS28-212ENST00000530836 PBKQ96KB5 322 aa22.39■■□□□ 1.18
VPS28-212ENST00000530836 PLVAPQ9BX97 442 aa22.39■■□□□ 1.18
VPS28-212ENST00000530836 MTUS1Q9ULD2 1270 aa22.39■■□□□ 1.18
VPS28-212ENST00000530836 ALG6Q9Y672 507 aa22.39■■□□□ 1.18
VPS28-212ENST00000530836 SZT2Q5T011 3432 aa22.39■■□□□ 1.17
VPS28-212ENST00000530836 TDRD15B5MCY1 1934 aaKnown RBP22.39■■□□□ 1.17
VPS28-212ENST00000530836 FNDC1Q4ZHG4 1894 aaPredicted RBP22.39■■□□□ 1.17
VPS28-212ENST00000530836 UQCRHLA0A096LP55 91 aa22.39■■□□□ 1.17
VPS28-212ENST00000530836 EFCAB8A8MWE9 144 aa22.39■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms