RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 RAD23BP54727 409 aa22.31■■□□□ 1.16
VPS28-205ENST00000526204 OSTNP61366 133 aa22.31■■□□□ 1.16
VPS28-205ENST00000526204 OTUD4Q01804 1114 aaKnown RBP22.31■■□□□ 1.16
VPS28-205ENST00000526204 ZKSCAN8Q15776 578 aaPredicted RBP22.31■■□□□ 1.16
VPS28-205ENST00000526204 RNF43Q68DV7 783 aa22.31■■□□□ 1.16
VPS28-205ENST00000526204 ACTL9Q8TC94 416 aa22.31■■□□□ 1.16
VPS28-205ENST00000526204 SPATA33Q96N06 139 aa22.31■■□□□ 1.16
VPS28-205ENST00000526204 PITPNM3Q9BZ71 974 aa22.31■■□□□ 1.16
VPS28-205ENST00000526204 CDT1Q9H211 546 aa22.31■■□□□ 1.16
VPS28-205ENST00000526204 CD248Q9HCU0 757 aa22.31■■□□□ 1.16
VPS28-205ENST00000526204 HBP1O60381 514 aa22.31■■□□□ 1.16
VPS28-205ENST00000526204 PHBP35232 272 aa22.31■■□□□ 1.16
VPS28-205ENST00000526204 CTCFP49711 727 aaPredicted RBP22.31■■□□□ 1.16
VPS28-205ENST00000526204 WDR4P57081 412 aaKnown RBP22.31■■□□□ 1.16
VPS28-205ENST00000526204 ADCY1Q08828 1119 aa22.31■■□□□ 1.16
VPS28-205ENST00000526204 MYO1EQ12965 1108 aa22.31■■□□□ 1.16
VPS28-205ENST00000526204 BNIP1Q12981 228 aa22.31■■□□□ 1.16
VPS28-205ENST00000526204 SPARCL1Q14515 664 aa22.31■■□□□ 1.16
VPS28-205ENST00000526204 ARFGAP1Q8N6T3 406 aa22.31■■□□□ 1.16
VPS28-205ENST00000526204 JOSD2Q8TAC2 188 aa22.31■■□□□ 1.16
VPS28-205ENST00000526204 DENND1AQ8TEH3 1009 aa22.31■■□□□ 1.16
VPS28-205ENST00000526204 NFKBIZQ9BYH8 718 aa22.31■■□□□ 1.16
VPS28-205ENST00000526204 CYTH4Q9UIA0 394 aa22.31■■□□□ 1.16
VPS28-205ENST00000526204 B4GALT5O43286 388 aa22.3■■□□□ 1.16
VPS28-205ENST00000526204 IL1R2P27930 398 aa22.3■■□□□ 1.16
VPS28-205ENST00000526204 SLC8A1P32418 973 aa22.3■■□□□ 1.16
VPS28-205ENST00000526204 ARL4CP56559 192 aa22.3■■□□□ 1.16
VPS28-205ENST00000526204 MBTD1Q05BQ5 628 aa22.3■■□□□ 1.16
VPS28-205ENST00000526204 EEF1DP3Q658K8 133 aa22.3■■□□□ 1.16
VPS28-205ENST00000526204 EFCAB12Q6NXP0 572 aa22.3■■□□□ 1.16
VPS28-205ENST00000526204 RGS9BPQ6ZS82 235 aa22.3■■□□□ 1.16
VPS28-205ENST00000526204 XYLT1Q86Y38 959 aa22.3■■□□□ 1.16
VPS28-205ENST00000526204 RSAD2Q8WXG1 361 aa22.3■■□□□ 1.16
VPS28-205ENST00000526204 PSMC3IPQ9P2W1 217 aaPredicted RBP22.3■■□□□ 1.16
VPS28-205ENST00000526204 SIX4Q9UIU6 781 aa22.3■■□□□ 1.16
VPS28-205ENST00000526204 IRF6O14896 467 aa22.3■■□□□ 1.16
VPS28-205ENST00000526204 CXCL8P10145 99 aa22.3■■□□□ 1.16
VPS28-205ENST00000526204 ATICP31939 592 aa22.3■■□□□ 1.16
VPS28-205ENST00000526204 FOXN2P32314 431 aa22.3■■□□□ 1.16
VPS28-205ENST00000526204 RIPK1Q13546 671 aa22.3■■□□□ 1.16
VPS28-205ENST00000526204 SMTNL2Q2TAL5 461 aa22.3■■□□□ 1.16
VPS28-205ENST00000526204 CEP120Q8N960 986 aa22.3■■□□□ 1.16
VPS28-205ENST00000526204 CNKSR2Q8WXI2 1034 aa22.3■■□□□ 1.16
VPS28-205ENST00000526204 CPXM1Q96SM3 734 aa22.3■■□□□ 1.16
VPS28-205ENST00000526204 ECT2Q9H8V3 914 aa22.3■■□□□ 1.16
VPS28-205ENST00000526204 PRMT7Q9NVM4 692 aaPredicted RBP22.3■■□□□ 1.16
VPS28-205ENST00000526204 AGAP1Q9UPQ3 857 aa22.3■■□□□ 1.16
VPS28-205ENST00000526204 STARD13Q9Y3M8 1113 aa22.3■■□□□ 1.16
VPS28-205ENST00000526204 A0A0G2JLL6 359 aaPredicted RBP22.29■■□□□ 1.16
VPS28-205ENST00000526204 RNF8O76064 485 aa22.29■■□□□ 1.16
VPS28-205ENST00000526204 RAP1GAPP47736 663 aa22.29■■□□□ 1.16
VPS28-205ENST00000526204 GEMIN4P57678 1058 aaKnown RBP22.29■■□□□ 1.16
VPS28-205ENST00000526204 DYNLT1P63172 113 aa22.29■■□□□ 1.16
VPS28-205ENST00000526204 POU5F1BQ06416 359 aa22.29■■□□□ 1.16
VPS28-205ENST00000526204 CCDC15Q0P6D6 951 aa22.29■■□□□ 1.16
VPS28-205ENST00000526204 PKN2Q16513 984 aaKnown RBP22.29■■□□□ 1.16
VPS28-205ENST00000526204 PRRT2Q7Z6L0 340 aaPredicted RBP22.29■■□□□ 1.16
VPS28-205ENST00000526204 C1orf127Q8N9H9 656 aa22.29■■□□□ 1.16
VPS28-205ENST00000526204 ATP11CQ8NB49 1132 aa22.29■■□□□ 1.16
VPS28-205ENST00000526204 PAIP2Q9BPZ3 127 aaKnown RBP22.29■■□□□ 1.16
VPS28-205ENST00000526204 ASCC2Q9H1I8 757 aaPredicted RBP22.29■■□□□ 1.16
VPS28-205ENST00000526204 CYP3A43Q9HB55 503 aa22.29■■□□□ 1.16
VPS28-205ENST00000526204 CNMDO75829 334 aa22.28■■□□□ 1.16
VPS28-205ENST00000526204 P4HA1P13674 534 aa22.28■■□□□ 1.16
VPS28-205ENST00000526204 GABRB2P47870 512 aa22.28■■□□□ 1.16
VPS28-205ENST00000526204 NCALDP61601 193 aa22.28■■□□□ 1.16
VPS28-205ENST00000526204 TNFAIP2Q03169 654 aa22.28■■□□□ 1.16
VPS28-205ENST00000526204 PTPN11Q06124 597 aaPredicted RBP22.28■■□□□ 1.16
VPS28-205ENST00000526204 EFHC2Q5JST6 749 aa22.28■■□□□ 1.16
VPS28-205ENST00000526204 KCNT1Q5JUK3 1230 aa22.28■■□□□ 1.16
VPS28-205ENST00000526204 HP1BP3Q5SSJ5 553 aaPredicted RBP22.28■■□□□ 1.16
VPS28-205ENST00000526204 CGB2Q6NT52 195 aa22.28■■□□□ 1.16
VPS28-205ENST00000526204 CCDC91Q7Z6B0 441 aa22.28■■□□□ 1.16
VPS28-205ENST00000526204 SLC4A11Q8NBS3 891 aa22.28■■□□□ 1.16
VPS28-205ENST00000526204 KCTD6Q8NC69 237 aa22.28■■□□□ 1.16
VPS28-205ENST00000526204 CMASQ8NFW8 434 aaPredicted RBP22.28■■□□□ 1.16
VPS28-205ENST00000526204 PYROXD1Q8WU10 500 aa22.28■■□□□ 1.16
VPS28-205ENST00000526204 SSU72Q9NP77 194 aaKnown RBP22.28■■□□□ 1.16
VPS28-205ENST00000526204 METTL5Q9NRN9 209 aaKnown RBP22.28■■□□□ 1.16
VPS28-205ENST00000526204 SPAG7O75391 227 aa22.28■■□□□ 1.16
VPS28-205ENST00000526204 PGK2P07205 417 aa22.28■■□□□ 1.16
VPS28-205ENST00000526204 ZC3H12AQ5D1E8 599 aaKnown RBP22.28■■□□□ 1.16
VPS28-205ENST00000526204 CCDC62Q6P9F0 684 aa22.28■■□□□ 1.16
VPS28-205ENST00000526204 TBC1D1Q86TI0 1168 aaPredicted RBP22.28■■□□□ 1.16
VPS28-205ENST00000526204 KIAA0319LQ8IZA0 1049 aa22.28■■□□□ 1.16
VPS28-205ENST00000526204 NAT8LQ8N9F0 302 aa22.28■■□□□ 1.16
VPS28-205ENST00000526204 TRAPPC12Q8WVT3 735 aa22.28■■□□□ 1.16
VPS28-205ENST00000526204 CPT1BQ92523 772 aa22.28■■□□□ 1.16
VPS28-205ENST00000526204 TMEM176AQ96HP8 235 aa22.28■■□□□ 1.16
VPS28-205ENST00000526204 FGD4Q96M96 766 aa22.28■■□□□ 1.16
VPS28-205ENST00000526204 VRTNQ9H8Y1 702 aa22.28■■□□□ 1.16
VPS28-205ENST00000526204 SAE1Q9UBE0 346 aaPredicted RBP22.28■■□□□ 1.16
VPS28-205ENST00000526204 TJP2Q9UDY2 1190 aa22.28■■□□□ 1.16
VPS28-205ENST00000526204 APOC4-APOC2K7ER74 178 aa22.27■■□□□ 1.16
VPS28-205ENST00000526204 CILPO75339 1184 aa22.27■■□□□ 1.16
VPS28-205ENST00000526204 ATP6V1G2O95670 118 aa22.27■■□□□ 1.16
VPS28-205ENST00000526204 APOC2P02655 101 aa22.27■■□□□ 1.16
VPS28-205ENST00000526204 HMGCRP04035 888 aa22.27■■□□□ 1.16
VPS28-205ENST00000526204 ERBB2P04626 1255 aa22.27■■□□□ 1.16
VPS28-205ENST00000526204 GJB1P08034 283 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms