RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 GLULP15104 373 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 PFKFB1P16118 471 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 CD72P21854 359 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 CCNE1P24864 410 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 CD52P31358 61 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 MTHFRP42898 656 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 RPL34P49207 117 aaKnown RBP3.06□□□□□ -1.92
MCF2-208ENST00000519895 ARID5BQ14865 1188 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 LONRF3Q496Y0 759 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 FAM47CQ5HY64 1035 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 SH3PXD2AQ5TCZ1 1133 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 SNX30Q5VWJ9 437 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 MCTP1Q6DN14 999 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 SLC8B1Q6J4K2 584 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 AGMOQ6ZNB7 445 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 ANKS3Q6ZW76 656 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 RGL4Q8IZJ4 473 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 CXorf38Q8TB03 319 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 SPPL3Q8TCT6 385 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 BSNDQ8WZ55 320 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 IGSF21Q96ID5 467 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 RPGRIP1Q96KN7 1286 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 SPATA17Q96L03 361 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 ADAM2Q99965 735 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 EMILIN2Q9BXX0 1053 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 GBP3Q9H0R5 595 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 VPS45Q9NRW7 570 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 RWDD2AQ9UIY3 292 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 SF3B1O75533 1304 aaKnown RBP eCLIP3.06□□□□□ -1.92
MCF2-208ENST00000519895 PLXNA4Q9HCM2 1894 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 hCG_2014768A0A024R1R8 64 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 RCCD1A6NED2 376 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 LRRC10BA6NIK2 292 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 MGEA5O60502 916 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 DKK1O94907 266 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 ZNF202O95125 648 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 ERBB2P04626 1255 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 SFTPCP11686 197 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 TRIM21P19474 475 aaKnown RBP3.06□□□□□ -1.92
MCF2-208ENST00000519895 NDUFV1P49821 464 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 TUBP50607 506 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 CLCN3P51790 818 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 GSCP56915 257 aaPredicted RBP3.06□□□□□ -1.92
MCF2-208ENST00000519895 STARD6P59095 220 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 SPAG1Q07617 926 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 NR1H3Q13133 447 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 TCTN1Q2MV58 587 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 SV2CQ496J9 727 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 TAF1BQ53T94 588 aaPredicted RBP3.06□□□□□ -1.92
MCF2-208ENST00000519895 CLLU1OSQ5K130 101 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 C1QL3Q5VWW1 255 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 LILRA6Q6PI73 481 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 CAPN12Q6ZSI9 719 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 ARCQ7LC44 396 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 HS2ST1Q7LGA3 356 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 KCNK18Q7Z418 384 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 TRIM50Q86XT4 487 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 RHPN2Q8IUC4 686 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 MYOCDQ8IZQ8 938 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 FAM200AQ8TCP9 573 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 TMEM40Q8WWA1 233 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 TTC9Q92623 222 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 TRMT2BQ96GJ1 504 aaKnown RBP3.06□□□□□ -1.92
MCF2-208ENST00000519895 SHDQ96IW2 340 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 TSG101Q99816 390 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 SEMA3CQ99985 751 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 EXOC1Q9NV70 894 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 IGSF9Q9P2J2 1179 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 PLAGL2Q9UPG8 496 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 TCHHQ07283 1943 aa3.06□□□□□ -1.92
MCF2-208ENST00000519895 RELNP78509 3460 aa3.05□□□□□ -1.92
MCF2-208ENST00000519895 E9PMD0 336 aa3.05□□□□□ -1.92
MCF2-208ENST00000519895 GABRDO14764 452 aa3.05□□□□□ -1.92
MCF2-208ENST00000519895 SUV39H1O43463 412 aa3.05□□□□□ -1.92
MCF2-208ENST00000519895 PRMT3O60678 531 aa3.05□□□□□ -1.92
MCF2-208ENST00000519895 USO1O60763 962 aaKnown RBP3.05□□□□□ -1.92
MCF2-208ENST00000519895 AKAP3O75969 853 aa3.05□□□□□ -1.92
MCF2-208ENST00000519895 ABLIM3O94929 683 aa3.05□□□□□ -1.92
MCF2-208ENST00000519895 PAPSS2O95340 614 aaPredicted RBP3.05□□□□□ -1.92
MCF2-208ENST00000519895 LATS1O95835 1130 aa3.05□□□□□ -1.92
MCF2-208ENST00000519895 ALDH2P05091 517 aa3.05□□□□□ -1.92
MCF2-208ENST00000519895 THP07101 528 aa3.05□□□□□ -1.92
MCF2-208ENST00000519895 GALTP07902 379 aa3.05□□□□□ -1.92
MCF2-208ENST00000519895 DCTP40126 519 aa3.05□□□□□ -1.92
MCF2-208ENST00000519895 LHX1P48742 406 aa3.05□□□□□ -1.92
MCF2-208ENST00000519895 DNM1Q05193 864 aaKnown RBP3.05□□□□□ -1.92
MCF2-208ENST00000519895 TMEM62Q0P6H9 643 aa3.05□□□□□ -1.92
MCF2-208ENST00000519895 INCA1Q0VD86 236 aa3.05□□□□□ -1.92
MCF2-208ENST00000519895 SUZ12Q15022 739 aaKnown RBP3.05□□□□□ -1.92
MCF2-208ENST00000519895 UPP1Q16831 310 aa3.05□□□□□ -1.92
MCF2-208ENST00000519895 USP41Q3LFD5 358 aa3.05□□□□□ -1.92
MCF2-208ENST00000519895 FAM102BQ5T8I3 360 aa3.05□□□□□ -1.92
MCF2-208ENST00000519895 RNF43Q68DV7 783 aa3.05□□□□□ -1.92
MCF2-208ENST00000519895 HEATR6Q6AI08 1181 aaKnown RBP3.05□□□□□ -1.92
MCF2-208ENST00000519895 CD300LGQ6UXG3 332 aa3.05□□□□□ -1.92
MCF2-208ENST00000519895 CCDC149Q6ZUS6 474 aa3.05□□□□□ -1.92
MCF2-208ENST00000519895 TCEAL8Q8IYN2 117 aa3.05□□□□□ -1.92
MCF2-208ENST00000519895 UBR7Q8N806 425 aa3.05□□□□□ -1.92
MCF2-208ENST00000519895 XXYLT1Q8NBI6 393 aa3.05□□□□□ -1.92
MCF2-208ENST00000519895 GSTCDQ8NEC7 633 aa3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms