RNA–Protein interactions for RNA: ENST00000515620.5

CLDND1-231, Transcript of claudin domain containing 1, human

TSL 3

Gene CLDND1, Length 663 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLDND1-231	ENST00000515620	MUT	P22033	750 aa		11.35	□□□□□ -0.59
CLDND1-231	ENST00000515620	TNFSF9	P41273	254 aa		11.35	□□□□□ -0.59
CLDND1-231	ENST00000515620	DPP6	P42658	865 aa		11.35	□□□□□ -0.59
CLDND1-231	ENST00000515620	GPR15	P49685	360 aa		11.35	□□□□□ -0.59
CLDND1-231	ENST00000515620	FAM160A1	Q05DH4	1040 aa		11.35	□□□□□ -0.59
CLDND1-231	ENST00000515620	MCL1	Q07820	350 aa		11.35	□□□□□ -0.59
CLDND1-231	ENST00000515620	NR1H3	Q13133	447 aa		11.35	□□□□□ -0.59
CLDND1-231	ENST00000515620	MAPK7	Q13164	816 aa		11.35	□□□□□ -0.59
CLDND1-231	ENST00000515620	MINDY1	Q8N5J2	469 aa		11.35	□□□□□ -0.59
CLDND1-231	ENST00000515620	ALLC	Q8N6M5	410 aa		11.35	□□□□□ -0.59
CLDND1-231	ENST00000515620	PNPLA1	Q8N8W4	532 aa		11.35	□□□□□ -0.59
CLDND1-231	ENST00000515620	GLIS3	Q8NEA6	775 aa		11.35	□□□□□ -0.59
CLDND1-231	ENST00000515620	SPPL2B	Q8TCT7	592 aa		11.35	□□□□□ -0.59
CLDND1-231	ENST00000515620	C2orf15	Q8WU43	125 aa	Known RBP	11.35	□□□□□ -0.59
CLDND1-231	ENST00000515620	HMGB4	Q8WW32	186 aa		11.35	□□□□□ -0.59
CLDND1-231	ENST00000515620	DRC1	Q96MC2	740 aa		11.35	□□□□□ -0.59
CLDND1-231	ENST00000515620	CAMK1G	Q96NX5	476 aa		11.35	□□□□□ -0.59
CLDND1-231	ENST00000515620	RUSC1	Q9BVN2	902 aa		11.35	□□□□□ -0.59
CLDND1-231	ENST00000515620	HAPLN2	Q9GZV7	340 aa		11.35	□□□□□ -0.59
CLDND1-231	ENST00000515620	DDX19A	Q9NUU7	478 aa	Known RBP	11.35	□□□□□ -0.59
CLDND1-231	ENST00000515620	SLC6A14	Q9UN76	642 aa		11.35	□□□□□ -0.59
CLDND1-231	ENST00000515620	CELSR3	Q9NYQ7	3312 aa		11.35	□□□□□ -0.59
CLDND1-231	ENST00000515620	OBSL1	O75147	1896 aa		11.34	□□□□□ -0.59
CLDND1-231	ENST00000515620	SFI1	A8K8P3	1242 aa		11.34	□□□□□ -0.59
CLDND1-231	ENST00000515620	KLF8	O95600	359 aa	Predicted RBP	11.34	□□□□□ -0.59
CLDND1-231	ENST00000515620	CYP11A1	P05108	521 aa		11.34	□□□□□ -0.59
CLDND1-231	ENST00000515620	FTH1P19	P0C7X4	201 aa		11.34	□□□□□ -0.59
CLDND1-231	ENST00000515620	CD59	P13987	128 aa		11.34	□□□□□ -0.59
CLDND1-231	ENST00000515620	HOXD12	P35452	270 aa		11.34	□□□□□ -0.59
CLDND1-231	ENST00000515620	OPRD1	P41143	372 aa		11.34	□□□□□ -0.59
CLDND1-231	ENST00000515620	HNRNPD	Q14103	355 aa	Known RBP	11.34	□□□□□ -0.59
CLDND1-231	ENST00000515620	TRIP6	Q15654	476 aa	Known RBP	11.34	□□□□□ -0.59
CLDND1-231	ENST00000515620	ZNF174	Q15697	407 aa		11.34	□□□□□ -0.59
CLDND1-231	ENST00000515620	ENOX2	Q16206	610 aa	Known RBP	11.34	□□□□□ -0.59
CLDND1-231	ENST00000515620	DUOXA1	Q1HG43	343 aa		11.34	□□□□□ -0.59
CLDND1-231	ENST00000515620	SDHAF4	Q5VUM1	108 aa		11.34	□□□□□ -0.59
CLDND1-231	ENST00000515620	PEAR1	Q5VY43	1037 aa	Predicted RBP	11.34	□□□□□ -0.59
CLDND1-231	ENST00000515620	CCNI2	Q6ZMN8	369 aa	Predicted RBP	11.34	□□□□□ -0.59
CLDND1-231	ENST00000515620	LRRTM3	Q86VH5	581 aa		11.34	□□□□□ -0.59
CLDND1-231	ENST00000515620	ADAMTS14	Q8WXS8	1223 aa		11.34	□□□□□ -0.59
CLDND1-231	ENST00000515620	BICD1	Q96G01	975 aa		11.34	□□□□□ -0.59
CLDND1-231	ENST00000515620	SLC22A12	Q96S37	553 aa		11.34	□□□□□ -0.59
CLDND1-231	ENST00000515620	CYP2S1	Q96SQ9	504 aa		11.34	□□□□□ -0.59
CLDND1-231	ENST00000515620	TM6SF1	Q9BZW5	370 aa		11.34	□□□□□ -0.59
CLDND1-231	ENST00000515620	PTPRD	P23468	1912 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	TRAV19	A0A0A6YYK7	116 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	TCRBV21S2A2	A0A5A6	115 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620		E9PMD0	336 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	SGK1	O00141	431 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	SH3BP5	O60239	455 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	PRB1	P04280	392 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	SERPINF2	P08697	491 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	USP17L7	P0C7H9	530 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	CSH1	P0DML2	217 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	CSH2	P0DML3	217 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	RPL6	Q02878	288 aa	Known RBP	11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	TRIM29	Q14134	588 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	MAP7D1	Q3KQU3	841 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	ZC2HC1C	Q53FD0	456 aa	Predicted RBP	11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	SPATA1	Q5VX52	437 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	C9orf57	Q5W0N0	161 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	JADE1	Q6IE81	842 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	ZPBP2	Q6X784	338 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	METTL23	Q86XA0	190 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	SFTPA1	Q8IWL2	248 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	THEM5	Q8N1Q8	247 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	PGBD3	Q8N328	593 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	DEFB119	Q8N690	84 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	IL17RC	Q8NAC3	791 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	TXNDC5	Q8NBS9	432 aa	Known RBP	11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	CEP76	Q8TAP6	659 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	SH3RF2	Q8TEC5	729 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	SNX29	Q8TEQ0	813 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	FAM212A	Q96EL1	285 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	PYM1	Q9BRP8	204 aa	Known RBP	11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	PI4K2A	Q9BTU6	479 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	LINC00597	Q9H2U6	94 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	TMEM206	Q9H813	350 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	CAPN10	Q9HC96	672 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	SCUBE2	Q9NQ36	999 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	UXT	Q9UBK9	157 aa	Predicted RBP	11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	DSE	Q9UL01	958 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	PCDHB9	Q9Y5E1	797 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	PCDHB5	Q9Y5E4	795 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	ZNF638	Q14966	1978 aa	Known RBP	11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	ACACA	Q13085	2346 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	DENND4C	Q5VZ89	1909 aa		11.33	□□□□□ -0.6
CLDND1-231	ENST00000515620	PCDH15	Q96QU1	1955 aa		11.32	□□□□□ -0.6
CLDND1-231	ENST00000515620	ARHGAP33	O14559	1287 aa		11.32	□□□□□ -0.6
CLDND1-231	ENST00000515620	CYB561D2	O14569	222 aa		11.32	□□□□□ -0.6
CLDND1-231	ENST00000515620	AP5Z1	O43299	807 aa		11.32	□□□□□ -0.6
CLDND1-231	ENST00000515620	PRPF40A	O75400	957 aa	Known RBP	11.32	□□□□□ -0.6
CLDND1-231	ENST00000515620	NFATC1	O95644	943 aa		11.32	□□□□□ -0.6
CLDND1-231	ENST00000515620	NFIC	P08651	508 aa		11.32	□□□□□ -0.6
CLDND1-231	ENST00000515620	MAPT	P10636	758 aa	Known RBP	11.32	□□□□□ -0.6
CLDND1-231	ENST00000515620	TIE1	P35590	1138 aa		11.32	□□□□□ -0.6
CLDND1-231	ENST00000515620	MRPS21	P82921	87 aa	Known RBP	11.32	□□□□□ -0.6
CLDND1-231	ENST00000515620	RAD51AP2	Q09MP3	1159 aa		11.32	□□□□□ -0.6
CLDND1-231	ENST00000515620	MESP2	Q0VG99	397 aa		11.32	□□□□□ -0.6
CLDND1-231	ENST00000515620	SMARCB1	Q12824	385 aa		11.32	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms