RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 LRRC10BA6NIK2 292 aa15.18■□□□□ 0.02
NUP54-216ENST00000514901 BECN2A8MW95 431 aa15.18■□□□□ 0.02
NUP54-216ENST00000514901 MICAL2O94851 1124 aa15.18■□□□□ 0.02
NUP54-216ENST00000514901 FGF19O95750 216 aa15.18■□□□□ 0.02
NUP54-216ENST00000514901 ZNF18P17022 549 aa15.18■□□□□ 0.02
NUP54-216ENST00000514901 CD58P19256 250 aa15.18■□□□□ 0.02
NUP54-216ENST00000514901 CYP2F1P24903 491 aa15.18■□□□□ 0.02
NUP54-216ENST00000514901 LRMPQ12912 555 aa15.18■□□□□ 0.02
NUP54-216ENST00000514901 TAF12Q16514 161 aa15.18■□□□□ 0.02
NUP54-216ENST00000514901 PABPC1LQ4VXU2 614 aaKnown RBP15.18■□□□□ 0.02
NUP54-216ENST00000514901 MIIPQ5JXC2 388 aa15.18■□□□□ 0.02
NUP54-216ENST00000514901 ACOT1Q86TX2 421 aa15.18■□□□□ 0.02
NUP54-216ENST00000514901 PLCD3Q8N3E9 789 aa15.18■□□□□ 0.02
NUP54-216ENST00000514901 PPM1KQ8N3J5 372 aa15.18■□□□□ 0.02
NUP54-216ENST00000514901 AOPEPQ8N6M6 819 aa15.18■□□□□ 0.02
NUP54-216ENST00000514901 TTC9BQ8N6N2 239 aa15.18■□□□□ 0.02
NUP54-216ENST00000514901 FAM200AQ8TCP9 573 aa15.18■□□□□ 0.02
NUP54-216ENST00000514901 ADAMTS19Q8TE59 1207 aa15.18■□□□□ 0.02
NUP54-216ENST00000514901 PSMG2Q969U7 264 aa15.18■□□□□ 0.02
NUP54-216ENST00000514901 ACSF2Q96CM8 615 aaPredicted RBP15.18■□□□□ 0.02
NUP54-216ENST00000514901 CRACR2AQ9BSW2 395 aa15.18■□□□□ 0.02
NUP54-216ENST00000514901 CEP72Q9P209 647 aa15.18■□□□□ 0.02
NUP54-216ENST00000514901 DNMT3BQ9UBC3 853 aaKnown RBP15.18■□□□□ 0.02
NUP54-216ENST00000514901 ZFP37Q9Y6Q3 630 aaPredicted RBP15.18■□□□□ 0.02
NUP54-216ENST00000514901 C5orf42Q9H799 3197 aa15.18■□□□□ 0.02
NUP54-216ENST00000514901 PES1O00541 588 aaKnown RBP15.17■□□□□ 0.02
NUP54-216ENST00000514901 TRIM66O15016 1216 aa15.17■□□□□ 0.02
NUP54-216ENST00000514901 RHOP08100 348 aa15.17■□□□□ 0.02
NUP54-216ENST00000514901 BDNFP23560 247 aa15.17■□□□□ 0.02
NUP54-216ENST00000514901 FSHRP23945 695 aa15.17■□□□□ 0.02
NUP54-216ENST00000514901 EPHA5P54756 1037 aa15.17■□□□□ 0.02
NUP54-216ENST00000514901 ZP2Q05996 745 aa15.17■□□□□ 0.02
NUP54-216ENST00000514901 KRT31Q15323 416 aa15.17■□□□□ 0.02
NUP54-216ENST00000514901 FKBP15Q5T1M5 1219 aa15.17■□□□□ 0.02
NUP54-216ENST00000514901 TRIM65Q6PJ69 517 aa15.17■□□□□ 0.02
NUP54-216ENST00000514901 DNAJB7Q7Z6W7 309 aaPredicted RBP15.17■□□□□ 0.02
NUP54-216ENST00000514901 DHX40Q8IX18 779 aaKnown RBP15.17■□□□□ 0.02
NUP54-216ENST00000514901 WHAMMQ8TF30 809 aa15.17■□□□□ 0.02
NUP54-216ENST00000514901 TMEM176AQ96HP8 235 aa15.17■□□□□ 0.02
NUP54-216ENST00000514901 SPATA17Q96L03 361 aa15.17■□□□□ 0.02
NUP54-216ENST00000514901 HEXIM2Q96MH2 286 aaKnown RBP15.17■□□□□ 0.02
NUP54-216ENST00000514901 ARID3AQ99856 593 aa15.17■□□□□ 0.02
NUP54-216ENST00000514901 CORO1BQ9BR76 489 aa15.17■□□□□ 0.02
NUP54-216ENST00000514901 MED10Q9BTT4 135 aa15.17■□□□□ 0.02
NUP54-216ENST00000514901 B3GNT5Q9BYG0 378 aa15.17■□□□□ 0.02
NUP54-216ENST00000514901 ASAH2Q9NR71 780 aa15.17■□□□□ 0.02
NUP54-216ENST00000514901 EHD2Q9NZN4 543 aa15.17■□□□□ 0.02
NUP54-216ENST00000514901 LIMA1Q9UHB6 759 aaKnown RBP15.17■□□□□ 0.02
NUP54-216ENST00000514901 CDH22Q9UJ99 828 aa15.17■□□□□ 0.02
NUP54-216ENST00000514901 KIAA1257Q9ULG3 409 aa15.17■□□□□ 0.02
NUP54-216ENST00000514901 C2orf16Q68DN1 1984 aa15.16■□□□□ 0.02
NUP54-216ENST00000514901 C19orf67A6NJJ6 358 aa15.16■□□□□ 0.02
NUP54-216ENST00000514901 LOC730098B7Z3J9 87 aa15.16■□□□□ 0.02
NUP54-216ENST00000514901 CSH1P0DML2 217 aa15.16■□□□□ 0.02
NUP54-216ENST00000514901 CSH2P0DML3 217 aa15.16■□□□□ 0.02
NUP54-216ENST00000514901 SLC9A1P19634 815 aa15.16■□□□□ 0.02
NUP54-216ENST00000514901 PON1P27169 355 aa15.16■□□□□ 0.02
NUP54-216ENST00000514901 ANXA13P27216 316 aa15.16■□□□□ 0.02
NUP54-216ENST00000514901 GRIK1P39086 918 aa15.16■□□□□ 0.02
NUP54-216ENST00000514901 MFAP3P55082 362 aa15.16■□□□□ 0.02
NUP54-216ENST00000514901 TPM4P67936 248 aa15.16■□□□□ 0.02
NUP54-216ENST00000514901 PHLDB3Q6NSJ2 640 aa15.16■□□□□ 0.02
NUP54-216ENST00000514901 PDZD4Q76G19 769 aaPredicted RBP15.16■□□□□ 0.02
NUP54-216ENST00000514901 RRAGAQ7L523 313 aa15.16■□□□□ 0.02
NUP54-216ENST00000514901 SCN4BQ8IWT1 228 aa15.16■□□□□ 0.02
NUP54-216ENST00000514901 FEZF2Q8TBJ5 459 aa15.16■□□□□ 0.02
NUP54-216ENST00000514901 SMARCD1Q96GM5 515 aa15.16■□□□□ 0.02
NUP54-216ENST00000514901 RPGRIP1Q96KN7 1286 aa15.16■□□□□ 0.02
NUP54-216ENST00000514901 C8orf48Q96LL4 319 aa15.16■□□□□ 0.02
NUP54-216ENST00000514901 TWNKQ96RR1 684 aa15.16■□□□□ 0.02
NUP54-216ENST00000514901 UHRF1Q96T88 793 aaPredicted RBP15.16■□□□□ 0.02
NUP54-216ENST00000514901 HNRNPABQ99729 332 aaKnown RBP15.16■□□□□ 0.02
NUP54-216ENST00000514901 UBE2TQ9NPD8 197 aaPredicted RBP15.16■□□□□ 0.02
NUP54-216ENST00000514901 HCFC1R1Q9NWW0 138 aa15.16■□□□□ 0.02
NUP54-216ENST00000514901 TAB2Q9NYJ8 693 aa15.16■□□□□ 0.02
NUP54-216ENST00000514901 HMGXB4Q9UGU5 601 aa15.16■□□□□ 0.02
NUP54-216ENST00000514901 MRPS23Q9Y3D9 190 aaKnown RBP15.16■□□□□ 0.02
NUP54-216ENST00000514901 SOAT2O75908 522 aa15.15■□□□□ 0.02
NUP54-216ENST00000514901 PAEPP09466 180 aa15.15■□□□□ 0.02
NUP54-216ENST00000514901 ATF6P18850 670 aa15.15■□□□□ 0.02
NUP54-216ENST00000514901 CDR1P51861 262 aa15.15■□□□□ 0.02
NUP54-216ENST00000514901 COPB1P53618 953 aaKnown RBP15.15■□□□□ 0.02
NUP54-216ENST00000514901 RAD23BP54727 409 aa15.15■□□□□ 0.02
NUP54-216ENST00000514901 IQCB1Q15051 598 aa15.15■□□□□ 0.02
NUP54-216ENST00000514901 DDR2Q16832 855 aa15.15■□□□□ 0.02
NUP54-216ENST00000514901 CCDC142Q17RM4 750 aa15.15■□□□□ 0.02
NUP54-216ENST00000514901 ZNF394Q53GI3 561 aa15.15■□□□□ 0.02
NUP54-216ENST00000514901 ZDHHC14Q8IZN3 488 aa15.15■□□□□ 0.02
NUP54-216ENST00000514901 FUKQ8N0W3 1084 aa15.15■□□□□ 0.02
NUP54-216ENST00000514901 GJD3Q8N144 294 aa15.15■□□□□ 0.02
NUP54-216ENST00000514901 UBR7Q8N806 425 aa15.15■□□□□ 0.02
NUP54-216ENST00000514901 TDRD5Q8NAT2 981 aaKnown RBP15.15■□□□□ 0.02
NUP54-216ENST00000514901 SLC4A11Q8NBS3 891 aa15.15■□□□□ 0.02
NUP54-216ENST00000514901 GIPC2Q8TF65 315 aa15.15■□□□□ 0.02
NUP54-216ENST00000514901 CYFIP2Q96F07 1278 aa15.15■□□□□ 0.02
NUP54-216ENST00000514901 LPIN3Q9BQK8 851 aa15.15■□□□□ 0.02
NUP54-216ENST00000514901 ZNF518BQ9C0D4 1074 aa15.15■□□□□ 0.02
NUP54-216ENST00000514901 VPS16Q9H269 839 aa15.15■□□□□ 0.02
NUP54-216ENST00000514901 HSD3B7Q9H2F3 369 aa15.15■□□□□ 0.02
NUP54-216ENST00000514901 UXTQ9UBK9 157 aaPredicted RBP15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms