RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 A8MUI8 341 aa13.71□□□□□ -0.21
TCOF1-213ENST00000514442 ADM5C9JUS6 153 aa13.71□□□□□ -0.21
TCOF1-213ENST00000514442 RIPK2O43353 540 aa13.71□□□□□ -0.21
TCOF1-213ENST00000514442 GRIK1P39086 918 aa13.71□□□□□ -0.21
TCOF1-213ENST00000514442 SKIV2L2P42285 1042 aaKnown RBP13.71□□□□□ -0.21
TCOF1-213ENST00000514442 EIF3EP60228 445 aaKnown RBP13.71□□□□□ -0.21
TCOF1-213ENST00000514442 ZNF268Q14587 947 aaPredicted RBP13.71□□□□□ -0.21
TCOF1-213ENST00000514442 CYP4A22Q5TCH4 519 aa13.71□□□□□ -0.21
TCOF1-213ENST00000514442 PCNX4Q63HM2 1172 aa13.71□□□□□ -0.21
TCOF1-213ENST00000514442 ANKMY2Q8IV38 441 aa13.71□□□□□ -0.21
TCOF1-213ENST00000514442 PDZD8Q8NEN9 1154 aa13.71□□□□□ -0.21
TCOF1-213ENST00000514442 KATNAL1Q9BW62 490 aa13.71□□□□□ -0.21
TCOF1-213ENST00000514442 SEMA4AQ9H3S1 761 aa13.71□□□□□ -0.21
TCOF1-213ENST00000514442 ITGB3P05106 788 aa13.71□□□□□ -0.21
TCOF1-213ENST00000514442 KRT10P13645 584 aa13.71□□□□□ -0.21
TCOF1-213ENST00000514442 STMN1P16949 149 aa13.71□□□□□ -0.21
TCOF1-213ENST00000514442 GSTA3Q16772 222 aa13.71□□□□□ -0.21
TCOF1-213ENST00000514442 FSCBQ5H9T9 825 aa13.71□□□□□ -0.21
TCOF1-213ENST00000514442 MTDHQ86UE4 582 aaKnown RBP13.71□□□□□ -0.21
TCOF1-213ENST00000514442 ZNF507Q8TCN5 953 aa13.71□□□□□ -0.21
TCOF1-213ENST00000514442 BTBD10Q9BSF8 475 aa13.71□□□□□ -0.21
TCOF1-213ENST00000514442 IDI2Q9BXS1 227 aa13.71□□□□□ -0.21
TCOF1-213ENST00000514442 RGL2O15211 777 aa13.71□□□□□ -0.22
TCOF1-213ENST00000514442 TMEM253P0C7T8 217 aa13.71□□□□□ -0.22
TCOF1-213ENST00000514442 ATP6V1B1P15313 513 aa13.71□□□□□ -0.22
TCOF1-213ENST00000514442 COILP38432 576 aaPredicted RBP13.71□□□□□ -0.22
TCOF1-213ENST00000514442 CASP2P42575 452 aa13.71□□□□□ -0.22
TCOF1-213ENST00000514442 ALDH18A1P54886 795 aaKnown RBP13.71□□□□□ -0.22
TCOF1-213ENST00000514442 ART3Q13508 389 aa13.71□□□□□ -0.22
TCOF1-213ENST00000514442 CCDC80Q76M96 950 aa13.71□□□□□ -0.22
TCOF1-213ENST00000514442 FAM163AQ96GL9 167 aaPredicted RBP13.71□□□□□ -0.22
TCOF1-213ENST00000514442 PPCSQ9HAB8 311 aa13.71□□□□□ -0.22
TCOF1-213ENST00000514442 HEY2Q9UBP5 337 aa13.71□□□□□ -0.22
TCOF1-213ENST00000514442 TRIM33Q9UPN9 1127 aa13.71□□□□□ -0.22
TCOF1-213ENST00000514442 PCDHB2Q9Y5E7 798 aa13.71□□□□□ -0.22
TCOF1-213ENST00000514442 GOLGA8QA0A0J9YX86 632 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 GOLGA8OA6NCC3 632 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 GOLGA8NF8WBI6 632 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 CLPTM1O96005 669 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 ATXN8OSP0DMR3 200 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 ITGA4P13612 1032 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 TAP1Q03518 808 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 PGM5Q15124 567 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 ADRM1Q16186 407 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 AMHR2Q16671 573 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 SMTNL2Q2TAL5 461 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 PPP1R15BQ5SWA1 713 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 ATL2Q8NHH9 583 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 PNMA5Q96PV4 448 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 VPS11Q9H270 941 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 GALNT8Q9NY28 637 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 DFFAO00273 331 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 FOXN3O00409 490 aaPredicted RBP13.7□□□□□ -0.22
TCOF1-213ENST00000514442 APOL1O14791 398 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 CSDE1O75534 798 aaKnown RBP13.7□□□□□ -0.22
TCOF1-213ENST00000514442 UPP2O95045 317 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 SLC1A1P43005 524 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 PTENP60484 403 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 MCL1Q07820 350 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 KDELC2Q7Z4H8 507 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 KIAA0895Q8NCT3 520 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 LENG1Q96BZ8 264 aaPredicted RBP13.7□□□□□ -0.22
TCOF1-213ENST00000514442 C9orf72Q96LT7 481 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 NIF3L1Q9GZT8 377 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 CCDC195A0A1B0GUA6 201 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 C5orf60A6NFR6 353 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 PSMG1O95456 288 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 CPA2P48052 419 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 GTF2A2P52657 109 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 PARP6Q2NL67 630 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 DNAAF5Q86Y56 855 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 SCUBE1Q8IWY4 988 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 DRAXINQ8NBI3 349 aaPredicted RBP13.7□□□□□ -0.22
TCOF1-213ENST00000514442 GTF3C2Q8WUA4 911 aaPredicted RBP13.7□□□□□ -0.22
TCOF1-213ENST00000514442 ACSF2Q96CM8 615 aaPredicted RBP13.7□□□□□ -0.22
TCOF1-213ENST00000514442 BTBD6Q96KE9 485 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 SPON2Q9BUD6 331 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 THAP2Q9H0W7 228 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 PSMC3IPQ9P2W1 217 aaPredicted RBP13.7□□□□□ -0.22
TCOF1-213ENST00000514442 VTNP04004 478 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 RGS2P41220 211 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 MTM1Q13496 603 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 MTFR1Q15390 333 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.7□□□□□ -0.22
TCOF1-213ENST00000514442 MRPL46Q9H2W6 279 aaKnown RBP13.7□□□□□ -0.22
TCOF1-213ENST00000514442 MANSC1Q9H8J5 431 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 RPL26L1Q9UNX3 145 aaKnown RBP13.7□□□□□ -0.22
TCOF1-213ENST00000514442 KCNH4Q9UQ05 1017 aa13.7□□□□□ -0.22
TCOF1-213ENST00000514442 CCDC189A1A4V9 331 aa13.69□□□□□ -0.22
TCOF1-213ENST00000514442 RNF225M0QZC1 329 aaPredicted RBP13.69□□□□□ -0.22
TCOF1-213ENST00000514442 AKAP3O75969 853 aa13.69□□□□□ -0.22
TCOF1-213ENST00000514442 SGPL1O95470 568 aa13.69□□□□□ -0.22
TCOF1-213ENST00000514442 PYGLP06737 847 aa13.69□□□□□ -0.22
TCOF1-213ENST00000514442 MAP1SQ66K74 1059 aaPredicted RBP13.69□□□□□ -0.22
TCOF1-213ENST00000514442 KCTD17Q8N5Z5 321 aa13.69□□□□□ -0.22
TCOF1-213ENST00000514442 ELMO3Q96BJ8 720 aa13.69□□□□□ -0.22
TCOF1-213ENST00000514442 RBM15Q96T37 977 aaKnown RBP eCLIP13.69□□□□□ -0.22
TCOF1-213ENST00000514442 KLHL4Q9C0H6 718 aa13.69□□□□□ -0.22
TCOF1-213ENST00000514442 MTMR12Q9C0I1 747 aa13.69□□□□□ -0.22
TCOF1-213ENST00000514442 CDC42EP4Q9H3Q1 356 aaKnown RBP13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms