RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 PRAMEF18Q5VWM3 479 aa9.71□□□□□ -0.85
LIMCH1-215ENST00000512632 ABHD15Q6UXT9 468 aa9.71□□□□□ -0.85
LIMCH1-215ENST00000512632 KIAA0319LQ8IZA0 1049 aa9.71□□□□□ -0.85
LIMCH1-215ENST00000512632 NSUN6Q8TEA1 469 aaKnown RBP9.71□□□□□ -0.85
LIMCH1-215ENST00000512632 INPP5DQ92835 1189 aa9.71□□□□□ -0.85
LIMCH1-215ENST00000512632 CALN1Q9BXU9 219 aa9.71□□□□□ -0.85
LIMCH1-215ENST00000512632 MT-ND3P03897 115 aa9.71□□□□□ -0.85
LIMCH1-215ENST00000512632 GNAZP19086 355 aa9.71□□□□□ -0.85
LIMCH1-215ENST00000512632 SERPINB3P29508 390 aa9.71□□□□□ -0.85
LIMCH1-215ENST00000512632 PTDSS1P48651 473 aaKnown RBP9.71□□□□□ -0.85
LIMCH1-215ENST00000512632 FSTL1Q12841 308 aa9.71□□□□□ -0.85
LIMCH1-215ENST00000512632 CCDC6Q16204 474 aa9.71□□□□□ -0.85
LIMCH1-215ENST00000512632 SLC45A4Q5BKX6 768 aa9.71□□□□□ -0.85
LIMCH1-215ENST00000512632 DENND1BQ6P3S1 775 aa9.71□□□□□ -0.85
LIMCH1-215ENST00000512632 DRICH1Q6PGQ1 229 aaPredicted RBP9.71□□□□□ -0.85
LIMCH1-215ENST00000512632 RGS9BPQ6ZS82 235 aa9.71□□□□□ -0.85
LIMCH1-215ENST00000512632 DPH6Q7L8W6 267 aa9.71□□□□□ -0.85
LIMCH1-215ENST00000512632 ZC3H18Q86VM9 953 aaKnown RBP9.71□□□□□ -0.85
LIMCH1-215ENST00000512632 IGDCC3Q8IVU1 814 aa9.71□□□□□ -0.85
LIMCH1-215ENST00000512632 RDM1Q8NG50 284 aa9.71□□□□□ -0.85
LIMCH1-215ENST00000512632 DTX3LQ8TDB6 740 aa9.71□□□□□ -0.85
LIMCH1-215ENST00000512632 SLC7A3Q8WY07 619 aa9.71□□□□□ -0.85
LIMCH1-215ENST00000512632 FAM111AQ96PZ2 611 aa9.71□□□□□ -0.85
LIMCH1-215ENST00000512632 OSBPL1AQ9BXW6 950 aa9.71□□□□□ -0.85
LIMCH1-215ENST00000512632 MANSC1Q9H8J5 431 aa9.71□□□□□ -0.85
LIMCH1-215ENST00000512632 CNTNAP2Q9UHC6 1331 aa9.71□□□□□ -0.86
LIMCH1-215ENST00000512632 C2CD2LO14523 706 aa9.71□□□□□ -0.86
LIMCH1-215ENST00000512632 ITGAVP06756 1048 aa9.71□□□□□ -0.86
LIMCH1-215ENST00000512632 PTPN4P29074 926 aa9.71□□□□□ -0.86
LIMCH1-215ENST00000512632 PHBP35232 272 aa9.71□□□□□ -0.86
LIMCH1-215ENST00000512632 CPA2P48052 419 aa9.71□□□□□ -0.86
LIMCH1-215ENST00000512632 GCLCP48506 637 aaPredicted RBP9.71□□□□□ -0.86
LIMCH1-215ENST00000512632 GHRHRQ02643 423 aa9.71□□□□□ -0.86
LIMCH1-215ENST00000512632 BLMHQ13867 455 aa9.71□□□□□ -0.86
LIMCH1-215ENST00000512632 SLFN12LQ6IEE8 588 aa9.71□□□□□ -0.86
LIMCH1-215ENST00000512632 PPIL6Q8IXY8 311 aa9.71□□□□□ -0.86
LIMCH1-215ENST00000512632 SCYL3Q8IZE3 742 aa9.71□□□□□ -0.86
LIMCH1-215ENST00000512632 HSPH1Q92598 858 aa9.71□□□□□ -0.86
LIMCH1-215ENST00000512632 XPO7Q9UIA9 1087 aaKnown RBP9.71□□□□□ -0.86
LIMCH1-215ENST00000512632 SNCAIPQ9Y6H5 919 aa9.71□□□□□ -0.86
LIMCH1-215ENST00000512632 H0YCG3 227 aa9.71□□□□□ -0.86
LIMCH1-215ENST00000512632 PEX10O60683 326 aa9.71□□□□□ -0.86
LIMCH1-215ENST00000512632 SMNDC1O75940 238 aaKnown RBP eCLIP9.71□□□□□ -0.86
LIMCH1-215ENST00000512632 MAP3K6O95382 1288 aa9.71□□□□□ -0.86
LIMCH1-215ENST00000512632 ITGBL1O95965 494 aaPredicted RBP9.71□□□□□ -0.86
LIMCH1-215ENST00000512632 SRGAP2CP0DJJ0 459 aa9.71□□□□□ -0.86
LIMCH1-215ENST00000512632 KRT3P12035 628 aa9.71□□□□□ -0.86
LIMCH1-215ENST00000512632 MARK3P27448 753 aa9.71□□□□□ -0.86
LIMCH1-215ENST00000512632 PIGHQ14442 188 aaPredicted RBP9.71□□□□□ -0.86
LIMCH1-215ENST00000512632 TTC7BQ86TV6 843 aa9.71□□□□□ -0.86
LIMCH1-215ENST00000512632 RFX6Q8HWS3 928 aa9.71□□□□□ -0.86
LIMCH1-215ENST00000512632 PDIK1LQ8N165 341 aa9.71□□□□□ -0.86
LIMCH1-215ENST00000512632 ARFGAP1Q8N6T3 406 aa9.71□□□□□ -0.86
LIMCH1-215ENST00000512632 LRRN4Q8WUT4 740 aa9.71□□□□□ -0.86
LIMCH1-215ENST00000512632 CADM1Q9BY67 442 aaKnown RBP9.71□□□□□ -0.86
LIMCH1-215ENST00000512632 PGAP2Q9UHJ9 254 aa9.71□□□□□ -0.86
LIMCH1-215ENST00000512632 AVILO75366 819 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 WFS1O76024 890 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 ZWINTO95229 277 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 RBP3P10745 1247 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 ARFIP2P53365 341 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 CDH8P55286 799 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 RTP1P59025 263 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 YWHAGP61981 247 aaKnown RBP eCLIP9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 TRPC3Q13507 836 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 PTPN20Q4JDL3 420 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 PAXIP1Q6ZW49 1069 aaPredicted RBP9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 CTAGE3PQ8IX95 158 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 THNSL1Q8IYQ7 743 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 TRIM55Q9BYV6 548 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 SYNCQ9H7C4 482 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 ARMCX1Q9P291 453 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 FARP1Q9Y4F1 1045 aaPredicted RBP9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 IKBKGQ9Y6K9 419 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 PIK3R2O00459 728 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 LPXNO60711 386 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 LRCH4O75427 683 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 HAUS5O94927 633 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 LDHAP00338 332 aaKnown RBP9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 ASS1P00966 412 aaKnown RBP9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 SUPT20HL2P0C7V6 817 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 BGNP21810 368 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 ELK3P41970 407 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 CXCL9Q07325 125 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 FAAP100Q0VG06 881 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 SUPT20HL1Q3ZLR7 823 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 LRRC38Q5VT99 294 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 VPS52Q8N1B4 723 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 FLAD1Q8NFF5 587 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 TSSK1BQ9BXA7 367 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 PORCNQ9H237 461 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 CYLDQ9NQC7 956 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 MAP3K20Q9NYL2 800 aaKnown RBP9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 STYXL1Q9Y6J8 313 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 COL2A1P02458 1487 aaPredicted RBP9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 TCRBV5S1A1TA0A578 114 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 GYG2O15488 501 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 STAM2O75886 525 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 FAM155BO75949 473 aa9.7□□□□□ -0.86
LIMCH1-215ENST00000512632 KRT19P08727 400 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms