RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 FAM47DPA6NHR8 397 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 ZNF862O60290 1169 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 BRAFP15056 766 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 GJA1P17302 382 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 ITIH2P19823 946 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 SFNP31947 248 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 EIF4A3P38919 411 aaKnown RBP3.71□□□□□ -1.82
USP53-205ENST00000509769 SLC26A3P40879 764 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 CASP5P51878 434 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 COPAP53621 1224 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 BIKQ13323 160 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 DPYSQ14117 519 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 MTFR1Q15390 333 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 AKAP4Q5JQC9 854 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 BROXQ5VW32 411 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 PRR5LQ6MZQ0 368 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 NIPAL1Q6NVV3 410 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 FAM122CQ6P4D5 195 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 TRIM67Q6ZTA4 783 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 NCCRP1Q6ZVX7 275 aaPredicted RBP3.71□□□□□ -1.82
USP53-205ENST00000509769 PTF1AQ7RTS3 328 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 SCUBE1Q8IWY4 988 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 FSTL5Q8N475 847 aaPredicted RBP3.71□□□□□ -1.82
USP53-205ENST00000509769 CAMKK1Q8N5S9 505 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 TCTEX1D2Q8WW35 142 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 GATAD2BQ8WXI9 593 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 TCEAL3Q969E4 200 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 PLEKHA8Q96JA3 519 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 BTF3L4Q96K17 158 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 TESK2Q96S53 571 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 NUP85Q9BW27 656 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 RTFDC1Q9BY42 306 aaPredicted RBP3.71□□□□□ -1.82
USP53-205ENST00000509769 SLITRK2Q9H156 845 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 WNT8AQ9H1J5 351 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 DPH5Q9H2P9 285 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 SAV1Q9H4B6 383 aaPredicted RBP3.71□□□□□ -1.82
USP53-205ENST00000509769 PRDM8Q9NQV8 689 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 FARSBQ9NSD9 589 aaKnown RBP3.71□□□□□ -1.82
USP53-205ENST00000509769 PNPLA3Q9NST1 481 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 EXD2Q9NVH0 621 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 WBP1LQ9NX94 342 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 NDUFAF4Q9P032 175 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 CHPF2Q9P2E5 772 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 EVLQ9UI08 416 aaPredicted RBP3.71□□□□□ -1.82
USP53-205ENST00000509769 SLC12A4Q9UP95 1085 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 PA2G4Q9UQ80 394 aaKnown RBP3.71□□□□□ -1.82
USP53-205ENST00000509769 RUVBL1Q9Y265 456 aaKnown RBP3.71□□□□□ -1.82
USP53-205ENST00000509769 KCNIP3Q9Y2W7 256 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 RBM8AQ9Y5S9 174 aaKnown RBP3.71□□□□□ -1.82
USP53-205ENST00000509769 ITIH6Q6UXX5 1313 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 SH3TC1Q8TE82 1336 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 YTHDC2Q9H6S0 1430 aaKnown RBP3.71□□□□□ -1.82
USP53-205ENST00000509769 J3QR89 54 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 SOX30O94993 753 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 NCAM1P13591 858 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 ATF7P17544 494 aaPredicted RBP3.71□□□□□ -1.82
USP53-205ENST00000509769 CD151P48509 253 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 MAPKAPK2P49137 400 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 RGS6P49758 472 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 PDE1AP54750 535 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 CDH4P55283 916 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 MAGOHP61326 146 aaKnown RBP3.71□□□□□ -1.82
USP53-205ENST00000509769 MECOMQ03112 1051 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 PTK2Q05397 1052 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 EIF4A2Q14240 407 aaKnown RBP3.71□□□□□ -1.82
USP53-205ENST00000509769 NR1D2Q14995 579 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 NCAPHQ15003 741 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 USF2Q15853 346 aaPredicted RBP3.71□□□□□ -1.82
USP53-205ENST00000509769 SCARA3Q6AZY7 606 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 ZCCHC8Q6NZY4 707 aaKnown RBP3.71□□□□□ -1.82
USP53-205ENST00000509769 KCNK18Q7Z418 384 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 TTC30AQ86WT1 665 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 C2CD5Q86YS7 1000 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 IFNL1Q8IU54 200 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 CFAP206Q8IYR0 622 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 CLEC4FQ8N1N0 589 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 PROM2Q8N271 834 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 POC5Q8NA72 575 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 NOA1Q8NC60 698 aaKnown RBP3.71□□□□□ -1.82
USP53-205ENST00000509769 C1orf131Q8NDD1 294 aaKnown RBP3.71□□□□□ -1.82
USP53-205ENST00000509769 HEXDCQ8WVB3 486 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 KCTD4Q8WVF5 259 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 EXOC2Q96KP1 924 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 PPP1R16BQ96T49 567 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 GTPBP2Q9BX10 602 aaKnown RBP3.71□□□□□ -1.82
USP53-205ENST00000509769 CCDC177Q9NQR7 707 aaPredicted RBP3.71□□□□□ -1.82
USP53-205ENST00000509769 RIC8BQ9NVN3 520 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 CYP39A1Q9NYL5 469 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 ADA2Q9NZK5 511 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 DNAJB4Q9UDY4 337 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 ZC3H7BQ9UGR2 993 aaKnown RBP3.71□□□□□ -1.82
USP53-205ENST00000509769 TAGLN3Q9UI15 199 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 SIX4Q9UIU6 781 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 SNX7Q9UNH6 387 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 NRXN1Q9ULB1 1477 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 A0A0G2JND7 137 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 RBM47A0AV96 593 aaKnown RBP3.71□□□□□ -1.82
USP53-205ENST00000509769 MYO1FO00160 1098 aa3.71□□□□□ -1.82
USP53-205ENST00000509769 PSMD12O00232 456 aaPredicted RBP3.71□□□□□ -1.82
USP53-205ENST00000509769 IGF2BP3O00425 579 aaKnown RBP eCLIP3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms