RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 SYT15Q9BQS2 421 aa15.45■□□□□ 0.06
HMGCS1-203ENST00000507004 SLC46A2Q9BY10 475 aa15.45■□□□□ 0.06
HMGCS1-203ENST00000507004 TDP1Q9NUW8 608 aa15.45■□□□□ 0.06
HMGCS1-203ENST00000507004 MAGEC2Q9UBF1 373 aaPredicted RBP15.45■□□□□ 0.06
HMGCS1-203ENST00000507004 GTF3C4Q9UKN8 822 aa15.45■□□□□ 0.06
HMGCS1-203ENST00000507004 ATP6V1DQ9Y5K8 247 aa15.45■□□□□ 0.06
HMGCS1-203ENST00000507004 PATJQ8NI35 1801 aa15.45■□□□□ 0.06
HMGCS1-203ENST00000507004 TGFB1I1O43294 461 aa15.44■□□□□ 0.06
HMGCS1-203ENST00000507004 TACC1O75410 805 aa15.44■□□□□ 0.06
HMGCS1-203ENST00000507004 CNR2P34972 360 aa15.44■□□□□ 0.06
HMGCS1-203ENST00000507004 PPP3CCP48454 512 aa15.44■□□□□ 0.06
HMGCS1-203ENST00000507004 CYP24A1Q07973 514 aa15.44■□□□□ 0.06
HMGCS1-203ENST00000507004 TRPC3Q13507 836 aa15.44■□□□□ 0.06
HMGCS1-203ENST00000507004 PDGFRLQ15198 375 aa15.44■□□□□ 0.06
HMGCS1-203ENST00000507004 ERMP1Q7Z2K6 904 aa15.44■□□□□ 0.06
HMGCS1-203ENST00000507004 KIAA1958Q8N8K9 716 aa15.44■□□□□ 0.06
HMGCS1-203ENST00000507004 OR5B17Q8NGF7 314 aa15.44■□□□□ 0.06
HMGCS1-203ENST00000507004 CCDC47Q96A33 483 aaKnown RBP15.44■□□□□ 0.06
HMGCS1-203ENST00000507004 SYAP1Q96A49 352 aaPredicted RBP15.44■□□□□ 0.06
HMGCS1-203ENST00000507004 RSPRY1Q96DX4 576 aa15.44■□□□□ 0.06
HMGCS1-203ENST00000507004 SPATA17Q96L03 361 aa15.44■□□□□ 0.06
HMGCS1-203ENST00000507004 HINFPQ9BQA5 517 aa15.44■□□□□ 0.06
HMGCS1-203ENST00000507004 EPC1Q9H2F5 836 aa15.44■□□□□ 0.06
HMGCS1-203ENST00000507004 TMLHEQ9NVH6 421 aa15.44■□□□□ 0.06
HMGCS1-203ENST00000507004 MAGED2Q9UNF1 606 aaPredicted RBP15.44■□□□□ 0.06
HMGCS1-203ENST00000507004 GVINP1Q7Z2Y8 2422 aa15.44■□□□□ 0.06
HMGCS1-203ENST00000507004 COL4A2P08572 1712 aa15.43■□□□□ 0.06
HMGCS1-203ENST00000507004 TICRRQ7Z2Z1 1910 aa15.43■□□□□ 0.06
HMGCS1-203ENST00000507004 EP300Q09472 2414 aaPredicted RBP15.43■□□□□ 0.06
HMGCS1-203ENST00000507004 SLC38A8A6NNN8 435 aa15.43■□□□□ 0.06
HMGCS1-203ENST00000507004 TRIM66O15016 1216 aa15.43■□□□□ 0.06
HMGCS1-203ENST00000507004 EXOC3O60645 756 aa15.43■□□□□ 0.06
HMGCS1-203ENST00000507004 PRAMEF12O95522 483 aa15.43■□□□□ 0.06
HMGCS1-203ENST00000507004 USP17L7P0C7H9 530 aa15.43■□□□□ 0.06
HMGCS1-203ENST00000507004 DLATP10515 647 aaKnown RBP15.43■□□□□ 0.06
HMGCS1-203ENST00000507004 SDHBP21912 280 aa15.43■□□□□ 0.06
HMGCS1-203ENST00000507004 ACAT1P24752 427 aaKnown RBP15.43■□□□□ 0.06
HMGCS1-203ENST00000507004 CYP2F1P24903 491 aa15.43■□□□□ 0.06
HMGCS1-203ENST00000507004 ANXA13P27216 316 aa15.43■□□□□ 0.06
HMGCS1-203ENST00000507004 HOXD13P35453 343 aa15.43■□□□□ 0.06
HMGCS1-203ENST00000507004 TNNC1P63316 161 aa15.43■□□□□ 0.06
HMGCS1-203ENST00000507004 KRT85P78386 507 aa15.43■□□□□ 0.06
HMGCS1-203ENST00000507004 FAM160A1Q05DH4 1040 aa15.43■□□□□ 0.06
HMGCS1-203ENST00000507004 FOXD4L5Q5VV16 416 aaPredicted RBP15.43■□□□□ 0.06
HMGCS1-203ENST00000507004 MAB21L3Q8N8X9 362 aa15.43■□□□□ 0.06
HMGCS1-203ENST00000507004 SUMF1Q8NBK3 374 aa15.43■□□□□ 0.06
HMGCS1-203ENST00000507004 GLIS3Q8NEA6 775 aa15.43■□□□□ 0.06
HMGCS1-203ENST00000507004 CCDC26Q8TAB7 109 aa15.43■□□□□ 0.06
HMGCS1-203ENST00000507004 FOXD4L4Q8WXT5 416 aaPredicted RBP15.43■□□□□ 0.06
HMGCS1-203ENST00000507004 HPS3Q969F9 1004 aa15.43■□□□□ 0.06
HMGCS1-203ENST00000507004 CCDC34Q96HJ3 373 aa15.43■□□□□ 0.06
HMGCS1-203ENST00000507004 MMS19Q96T76 1030 aa15.43■□□□□ 0.06
HMGCS1-203ENST00000507004 SNX25Q9H3E2 840 aa15.43■□□□□ 0.06
HMGCS1-203ENST00000507004 EXOC1Q9NV70 894 aa15.43■□□□□ 0.06
HMGCS1-203ENST00000507004 NCDNQ9UBB6 729 aa15.43■□□□□ 0.06
HMGCS1-203ENST00000507004 RAB23Q9ULC3 237 aa15.43■□□□□ 0.06
HMGCS1-203ENST00000507004 NCANO14594 1321 aa15.43■□□□□ 0.06
HMGCS1-203ENST00000507004 TRAV19A0A0A6YYK7 116 aa15.42■□□□□ 0.06
HMGCS1-203ENST00000507004 ATG13O75143 517 aa15.42■□□□□ 0.06
HMGCS1-203ENST00000507004 TCF3P15923 654 aa15.42■□□□□ 0.06
HMGCS1-203ENST00000507004 CMA1P23946 247 aa15.42■□□□□ 0.06
HMGCS1-203ENST00000507004 HOXA6P31267 233 aa15.42■□□□□ 0.06
HMGCS1-203ENST00000507004 ID4P47928 161 aa15.42■□□□□ 0.06
HMGCS1-203ENST00000507004 CYP2J2P51589 502 aa15.42■□□□□ 0.06
HMGCS1-203ENST00000507004 DNM1Q05193 864 aaKnown RBP15.42■□□□□ 0.06
HMGCS1-203ENST00000507004 RUNX3Q13761 415 aa15.42■□□□□ 0.06
HMGCS1-203ENST00000507004 DDR2Q16832 855 aa15.42■□□□□ 0.06
HMGCS1-203ENST00000507004 LMBRD2Q68DH5 695 aaPredicted RBP15.42■□□□□ 0.06
HMGCS1-203ENST00000507004 TMEM150AQ86TG1 271 aa15.42■□□□□ 0.06
HMGCS1-203ENST00000507004 OSTM1Q86WC4 334 aa15.42■□□□□ 0.06
HMGCS1-203ENST00000507004 SLC9A9Q8IVB4 645 aa15.42■□□□□ 0.06
HMGCS1-203ENST00000507004 SCN4BQ8IWT1 228 aa15.42■□□□□ 0.06
HMGCS1-203ENST00000507004 NELFCDQ8IXH7 590 aa15.42■□□□□ 0.06
HMGCS1-203ENST00000507004 RDH13Q8NBN7 331 aa15.42■□□□□ 0.06
HMGCS1-203ENST00000507004 MYCBPAPQ8TBZ2 947 aa15.42■□□□□ 0.06
HMGCS1-203ENST00000507004 CCDC127Q96BQ5 260 aa15.42■□□□□ 0.06
HMGCS1-203ENST00000507004 FAM83CQ9BQN1 747 aa15.42■□□□□ 0.06
HMGCS1-203ENST00000507004 BLZF1Q9H2G9 400 aa15.42■□□□□ 0.06
HMGCS1-203ENST00000507004 VRTNQ9H8Y1 702 aa15.42■□□□□ 0.06
HMGCS1-203ENST00000507004 GKN1Q9NS71 199 aa15.42■□□□□ 0.06
HMGCS1-203ENST00000507004 OTOGLQ3ZCN5 2332 aa15.42■□□□□ 0.06
HMGCS1-203ENST00000507004 CLIC2O15247 247 aa15.41■□□□□ 0.06
HMGCS1-203ENST00000507004 PHACTR2O75167 634 aa15.41■□□□□ 0.06
HMGCS1-203ENST00000507004 TRIM21P19474 475 aaKnown RBP15.41■□□□□ 0.06
HMGCS1-203ENST00000507004 GNL1P36915 607 aaPredicted RBP15.41■□□□□ 0.06
HMGCS1-203ENST00000507004 AFMP43652 599 aa15.41■□□□□ 0.06
HMGCS1-203ENST00000507004 GRSF1Q12849 480 aaKnown RBP eCLIP15.41■□□□□ 0.06
HMGCS1-203ENST00000507004 DENND5BQ6ZUT9 1274 aa15.41■□□□□ 0.06
HMGCS1-203ENST00000507004 KBTBD7Q8WVZ9 684 aa15.41■□□□□ 0.06
HMGCS1-203ENST00000507004 USP13Q92995 863 aaPredicted RBP15.41■□□□□ 0.06
HMGCS1-203ENST00000507004 MYLPFQ96A32 169 aa15.41■□□□□ 0.06
HMGCS1-203ENST00000507004 LRRC3BQ96PB8 259 aa15.41■□□□□ 0.06
HMGCS1-203ENST00000507004 ELOVL4Q9GZR5 314 aa15.41■□□□□ 0.06
HMGCS1-203ENST00000507004 SLC39A2Q9NP94 309 aa15.41■□□□□ 0.06
HMGCS1-203ENST00000507004 GTSE1Q9NYZ3 720 aa15.41■□□□□ 0.06
HMGCS1-203ENST00000507004 GMEB2Q9UKD1 530 aa15.41■□□□□ 0.06
HMGCS1-203ENST00000507004 ATP8B3O60423 1300 aa15.41■□□□□ 0.06
HMGCS1-203ENST00000507004 PTPRJQ12913 1337 aa15.41■□□□□ 0.06
HMGCS1-203ENST00000507004 PDXKO00764 312 aa15.4■□□□□ 0.06
HMGCS1-203ENST00000507004 CKMP06732 381 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms