RNA–Protein interactions for RNA: ENST00000497597.5

TRAPPC12-223, Transcript of trafficking protein particle complex 12, human

TSL 2

Gene TRAPPC12, Length 3,401 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRAPPC12-223	ENST00000497597	ZCCHC9	Q8N567	271 aa	Known RBP	11.1	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	ABHD8	Q96I13	439 aa		11.1	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	KIFC3	Q9BVG8	833 aa		11.1	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	ACTL7B	Q9Y614	415 aa		11.1	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	IQANK1	A0A1B0GTG1	560 aa		11.1	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	RIMBP2	O15034	1052 aa		11.1	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	LSM1	O15116	133 aa	Known RBP	11.1	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	LYPLA1	O75608	230 aa	Predicted RBP	11.1	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	VIL1	P09327	827 aa	Known RBP	11.1	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	ALOX15	P16050	662 aa	Predicted RBP	11.1	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	FGFR3	P22607	806 aa		11.1	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	RPL5	P46777	297 aa	Known RBP	11.1	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	STT3A	P46977	705 aa		11.1	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	CTC1	Q2NKJ3	1217 aa		11.1	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	ASPRV1	Q53RT3	343 aa		11.1	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	C16orf46	Q6P387	395 aa		11.1	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	MFSD7	Q6UXD7	560 aa		11.1	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	CBWD2	Q8IUF1	395 aa		11.1	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	RHOT1	Q8IXI2	618 aa		11.1	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	USP13	Q92995	863 aa	Predicted RBP	11.1	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	ANKRD2	Q9GZV1	360 aa		11.1	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	COPS7B	Q9H9Q2	264 aa	Predicted RBP	11.1	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	S100A14	Q9HCY8	104 aa		11.1	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	SELENON	Q9NZV5	590 aa		11.1	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	PCSK1N	Q9UHG2	260 aa		11.1	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	ADAMTS6	Q9UKP5	1117 aa		11.1	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	PKD1L3	Q7Z443	1732 aa		11.1	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	MROH7	Q68CQ1	1323 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	LMO7	Q8WWI1	1683 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	SMIM31	A0A1B0GVY4	71 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	NEMP1	O14524	444 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	DNALI1	O14645	258 aa	Predicted RBP	11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	ZBTB5	O15062	677 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	SLC16A4	O15374	487 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	ADCY6	O43306	1168 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	EDIL3	O43854	480 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	TM7SF2	O76062	418 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	TOP3B	O95985	862 aa	Known RBP	11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	RPA1	P27694	616 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	PCSK6	P29122	969 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	PARP10	Q53GL7	1025 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	NXN	Q6DKJ4	435 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	DPY19L2P1	Q6NXN4	242 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	C16orf87	Q6PH81	154 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	PATL1	Q86TB9	770 aa	Known RBP	11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	GPR88	Q9GZN0	384 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	ACSS2	Q9NR19	701 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	UVRAG	Q9P2Y5	699 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	MAGED2	Q9UNF1	606 aa	Predicted RBP	11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	APOBEC2	Q9Y235	224 aa	Known RBP	11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	CLEC11A	Q9Y240	323 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	CASZ1	Q86V15	1759 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	USP54	Q70EL1	1684 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	TP73	O15350	636 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	PRPF4	O43172	522 aa	Known RBP eCLIP	11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	TNNI1	P19237	187 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	MUT	P22033	750 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	ACTR3	P61158	418 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	PSMC1	P62191	440 aa	Known RBP	11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	GSTO1	P78417	241 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	NFX1	Q12986	1120 aa	Known RBP	11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	CYP1B1	Q16678	543 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	ANKRD20A4	Q4UJ75	823 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	ANKRD22	Q5VYY1	191 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	LPCAT2	Q7L5N7	544 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	NET1	Q7Z628	596 aa	Predicted RBP	11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	STKLD1	Q8NE28	680 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	SOX13	Q9UN79	622 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	RPL26L1	Q9UNX3	145 aa	Known RBP	11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	ZNF652	Q9Y2D9	606 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	TMA7	Q9Y2S6	64 aa	Known RBP	11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	TMEM150B	A6NC51	233 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	TRAFD1	O14545	582 aa	Predicted RBP	11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	PDGFRB	P09619	1106 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	WEE2	P0C1S8	567 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	POLR2M	P0CAP2	368 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	PABPC4L	P0CB38	370 aa	Known RBP	11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	SPATA31C1	P0DKV0	1188 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	GAP43	P17677	238 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	SCNN1D	P51172	638 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	CACNB3	P54284	484 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	PKNOX1	P55347	436 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	PEX3	P56589	373 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	MFSD14B	Q5SR56	506 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	KLHL35	Q6PF15	583 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	CCDC33	Q8N5R6	958 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	ZFP28	Q8NHY6	868 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	TAS1R2	Q8TE23	839 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	KREMEN1	Q96MU8	473 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	CALN1	Q9BXU9	219 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	BRD8	Q9H0E9	1235 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	MAN1C1	Q9NR34	630 aa		11.09	□□□□□ -0.63
TRAPPC12-223	ENST00000497597	KIF1A	Q12756	1690 aa		11.08	□□□□□ -0.64
TRAPPC12-223	ENST00000497597	GTPBP10	A4D1E9	387 aa	Known RBP	11.08	□□□□□ -0.64
TRAPPC12-223	ENST00000497597	FAM86B1	E9PN63	330 aa		11.08	□□□□□ -0.64
TRAPPC12-223	ENST00000497597	TRMU	O75648	421 aa	Known RBP	11.08	□□□□□ -0.64
TRAPPC12-223	ENST00000497597	FAM86B2	P0C5J1	330 aa		11.08	□□□□□ -0.64
TRAPPC12-223	ENST00000497597	CDK4	P11802	303 aa		11.08	□□□□□ -0.64
TRAPPC12-223	ENST00000497597	TCF4	P15884	667 aa		11.08	□□□□□ -0.64
TRAPPC12-223	ENST00000497597	MTTP	P55157	894 aa		11.08	□□□□□ -0.64

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