RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 LAMTOR5O43504 91 aa5.53□□□□□ -1.52
CSMD3-208ENST00000497026 DUSP11O75319 330 aaKnown RBP5.53□□□□□ -1.52
CSMD3-208ENST00000497026 CYP7B1O75881 506 aa5.53□□□□□ -1.52
CSMD3-208ENST00000497026 FBXO21O94952 628 aa5.53□□□□□ -1.52
CSMD3-208ENST00000497026 REC8O95072 547 aa5.53□□□□□ -1.52
CSMD3-208ENST00000497026 C6orf222P0C671 652 aaPredicted RBP5.53□□□□□ -1.52
CSMD3-208ENST00000497026 RARBP10826 455 aa5.53□□□□□ -1.52
CSMD3-208ENST00000497026 PYGMP11217 842 aa5.53□□□□□ -1.52
CSMD3-208ENST00000497026 CST5P28325 142 aaPredicted RBP5.53□□□□□ -1.52
CSMD3-208ENST00000497026 HSD17B4P51659 736 aa5.53□□□□□ -1.52
CSMD3-208ENST00000497026 ADAM17P78536 824 aa5.53□□□□□ -1.52
CSMD3-208ENST00000497026 GUCY1A3Q02108 690 aa5.53□□□□□ -1.52
CSMD3-208ENST00000497026 NFATC3Q12968 1075 aa5.53□□□□□ -1.52
CSMD3-208ENST00000497026 PAK1Q13153 545 aa5.53□□□□□ -1.52
CSMD3-208ENST00000497026 KRT32Q14532 448 aa5.53□□□□□ -1.52
CSMD3-208ENST00000497026 ARHGAP36Q6ZRI8 547 aa5.53□□□□□ -1.52
CSMD3-208ENST00000497026 TMTC3Q6ZXV5 915 aa5.53□□□□□ -1.52
CSMD3-208ENST00000497026 GPR155Q7Z3F1 870 aa5.53□□□□□ -1.52
CSMD3-208ENST00000497026 KRT222Q8N1A0 295 aa5.53□□□□□ -1.52
CSMD3-208ENST00000497026 TMTC2Q8N394 836 aa5.53□□□□□ -1.52
CSMD3-208ENST00000497026 KLHDC9Q8NEP7 349 aa5.53□□□□□ -1.52
CSMD3-208ENST00000497026 DNERQ8NFT8 737 aa5.53□□□□□ -1.52
CSMD3-208ENST00000497026 CTCFLQ8NI51 663 aaPredicted RBP5.53□□□□□ -1.52
CSMD3-208ENST00000497026 JAKMIP1Q96N16 626 aaKnown RBP5.53□□□□□ -1.52
CSMD3-208ENST00000497026 TAAR1Q96RJ0 339 aa5.53□□□□□ -1.52
CSMD3-208ENST00000497026 TACO1Q9BSH4 297 aaKnown RBP5.53□□□□□ -1.52
CSMD3-208ENST00000497026 AMNQ9BXJ7 453 aa5.53□□□□□ -1.52
CSMD3-208ENST00000497026 AGXT2Q9BYV1 514 aa5.53□□□□□ -1.52
CSMD3-208ENST00000497026 SENP6Q9GZR1 1112 aaPredicted RBP5.53□□□□□ -1.52
CSMD3-208ENST00000497026 CCDC113Q9H0I3 377 aa5.53□□□□□ -1.52
CSMD3-208ENST00000497026 UPF3AQ9H1J1 476 aaKnown RBP5.53□□□□□ -1.52
CSMD3-208ENST00000497026 TSPY26PQ9H489 355 aa5.53□□□□□ -1.52
CSMD3-208ENST00000497026 SPTLC3Q9NUV7 552 aa5.53□□□□□ -1.52
CSMD3-208ENST00000497026 ARHGAP20Q9P2F6 1191 aa5.53□□□□□ -1.52
CSMD3-208ENST00000497026 ADD3Q9UEY8 706 aaKnown RBP5.53□□□□□ -1.52
CSMD3-208ENST00000497026 FAM184BQ9ULE4 1060 aa5.53□□□□□ -1.52
CSMD3-208ENST00000497026 PCDHA9Q9Y5H5 950 aa5.53□□□□□ -1.52
CSMD3-208ENST00000497026 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.53□□□□□ -1.52
CSMD3-208ENST00000497026 NID2Q14112 1375 aa5.53□□□□□ -1.52
CSMD3-208ENST00000497026 SCN10AQ9Y5Y9 1956 aa5.52□□□□□ -1.53
CSMD3-208ENST00000497026 LOC102724159A0A0B4J2E5 919 aa5.52□□□□□ -1.53
CSMD3-208ENST00000497026 hCG_1642624A0A1W2PR95 340 aa5.52□□□□□ -1.53
CSMD3-208ENST00000497026 KBTBD13C9JR72 458 aa5.52□□□□□ -1.53
CSMD3-208ENST00000497026 TULP2O00295 520 aa5.52□□□□□ -1.53
CSMD3-208ENST00000497026 ARIH2O95376 493 aa5.52□□□□□ -1.53
CSMD3-208ENST00000497026 CFBP00751 764 aa5.52□□□□□ -1.53
CSMD3-208ENST00000497026 CALM1P0DP23 149 aa5.52□□□□□ -1.53
CSMD3-208ENST00000497026 CALM2P0DP24 149 aa5.52□□□□□ -1.53
CSMD3-208ENST00000497026 CALM3P0DP25 149 aa5.52□□□□□ -1.53
CSMD3-208ENST00000497026 RPS6KB1P23443 525 aa5.52□□□□□ -1.53
CSMD3-208ENST00000497026 U2AF2P26368 475 aaKnown RBP eCLIP5.52□□□□□ -1.53
CSMD3-208ENST00000497026 SMARCA1P28370 1054 aa5.52□□□□□ -1.53
CSMD3-208ENST00000497026 KIF5BP33176 963 aa5.52□□□□□ -1.53
CSMD3-208ENST00000497026 SUMO1P63165 101 aaKnown RBP5.52□□□□□ -1.53
CSMD3-208ENST00000497026 TNFAIP2Q03169 654 aa5.52□□□□□ -1.53
CSMD3-208ENST00000497026 NOLC1Q14978 699 aaKnown RBP eCLIP5.52□□□□□ -1.53
CSMD3-208ENST00000497026 PWP2Q15269 919 aaKnown RBP5.52□□□□□ -1.53
CSMD3-208ENST00000497026 ZXDCQ2QGD7 858 aaPredicted RBP5.52□□□□□ -1.53
CSMD3-208ENST00000497026 BTBD8Q5XKL5 378 aa5.52□□□□□ -1.53
CSMD3-208ENST00000497026 BLOC1S2Q6QNY1 142 aa5.52□□□□□ -1.53
CSMD3-208ENST00000497026 TLK2Q86UE8 772 aa5.52□□□□□ -1.53
CSMD3-208ENST00000497026 OSTM1Q86WC4 334 aa5.52□□□□□ -1.53
CSMD3-208ENST00000497026 PTRH1Q86Y79 214 aaKnown RBP5.52□□□□□ -1.53
CSMD3-208ENST00000497026 FBXL16Q8N461 479 aa5.52□□□□□ -1.53
CSMD3-208ENST00000497026 FANCBQ8NB91 859 aa5.52□□□□□ -1.53
CSMD3-208ENST00000497026 IL31RAQ8NI17 732 aa5.52□□□□□ -1.53
CSMD3-208ENST00000497026 PCDH19Q8TAB3 1148 aa5.52□□□□□ -1.53
CSMD3-208ENST00000497026 PTPRN2Q92932 1015 aa5.52□□□□□ -1.53
CSMD3-208ENST00000497026 ZNF669Q96BR6 464 aaPredicted RBP5.52□□□□□ -1.53
CSMD3-208ENST00000497026 SSBP3Q9BWW4 388 aaPredicted RBP5.52□□□□□ -1.53
CSMD3-208ENST00000497026 MAF1Q9H063 256 aa5.52□□□□□ -1.53
CSMD3-208ENST00000497026 PRO3102Q9H379 93 aa5.52□□□□□ -1.53
CSMD3-208ENST00000497026 VTA1Q9NP79 307 aa5.52□□□□□ -1.53
CSMD3-208ENST00000497026 RIC8BQ9NVN3 520 aa5.52□□□□□ -1.53
CSMD3-208ENST00000497026 HSPBP1Q9NZL4 362 aa5.52□□□□□ -1.53
CSMD3-208ENST00000497026 SIRPGQ9P1W8 387 aa5.52□□□□□ -1.53
CSMD3-208ENST00000497026 MRPL11Q9Y3B7 192 aaKnown RBP5.52□□□□□ -1.53
CSMD3-208ENST00000497026 PCDHA1Q9Y5I3 950 aa5.52□□□□□ -1.53
CSMD3-208ENST00000497026 FRMPD4Q14CM0 1322 aa5.52□□□□□ -1.53
CSMD3-208ENST00000497026 MYH7BA7E2Y1 1941 aa5.52□□□□□ -1.53
CSMD3-208ENST00000497026 KLF18A0A0U1RQI7 1052 aa5.51□□□□□ -1.53
CSMD3-208ENST00000497026 NPEPPSL1A6NEC2 478 aa5.51□□□□□ -1.53
CSMD3-208ENST00000497026 FAM90A27PA6NNH2 459 aa5.51□□□□□ -1.53
CSMD3-208ENST00000497026 AQP7O14520 342 aa5.51□□□□□ -1.53
CSMD3-208ENST00000497026 MEIS2O14770 477 aa5.51□□□□□ -1.53
CSMD3-208ENST00000497026 CTIFO43310 598 aaKnown RBP5.51□□□□□ -1.53
CSMD3-208ENST00000497026 KLHL18O94889 574 aa5.51□□□□□ -1.53
CSMD3-208ENST00000497026 IL18BPO95998 194 aa5.51□□□□□ -1.53
CSMD3-208ENST00000497026 ASGR1P07306 291 aa5.51□□□□□ -1.53
CSMD3-208ENST00000497026 ENO2P09104 434 aaPredicted RBP5.51□□□□□ -1.53
CSMD3-208ENST00000497026 HMGB1P09429 215 aaKnown RBP5.51□□□□□ -1.53
CSMD3-208ENST00000497026 CASTP20810 708 aaKnown RBP5.51□□□□□ -1.53
CSMD3-208ENST00000497026 HOXA13P31271 388 aaPredicted RBP5.51□□□□□ -1.53
CSMD3-208ENST00000497026 DNM2P50570 870 aa5.51□□□□□ -1.53
CSMD3-208ENST00000497026 ACLYP53396 1101 aa5.51□□□□□ -1.53
CSMD3-208ENST00000497026 RCAN1P53805 252 aa5.51□□□□□ -1.53
CSMD3-208ENST00000497026 EPHA5P54756 1037 aa5.51□□□□□ -1.53
CSMD3-208ENST00000497026 EVCP57679 992 aa5.51□□□□□ -1.53
CSMD3-208ENST00000497026 BEX3Q00994 111 aa5.51□□□□□ -1.53
CSMD3-208ENST00000497026 TOB2Q14106 344 aaPredicted RBP5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms