RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, human

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPRF-215	ENST00000496447	BOLA3	Q53S33	107 aa		13.68	□□□□□ -0.22
PTPRF-215	ENST00000496447	TRPM5	Q9NZQ8	1165 aa		13.68	□□□□□ -0.22
PTPRF-215	ENST00000496447	PCDHB12	Q9Y5F1	795 aa		13.68	□□□□□ -0.22
PTPRF-215	ENST00000496447		A0A1W2PQJ5	194 aa		13.68	□□□□□ -0.22
PTPRF-215	ENST00000496447	HEATR9	A2RTY3	570 aa		13.68	□□□□□ -0.22
PTPRF-215	ENST00000496447	STX7	O15400	261 aa	Known RBP	13.68	□□□□□ -0.22
PTPRF-215	ENST00000496447	NPTX2	P47972	431 aa		13.68	□□□□□ -0.22
PTPRF-215	ENST00000496447	FXR1	P51114	621 aa	Known RBP eCLIP	13.68	□□□□□ -0.22
PTPRF-215	ENST00000496447	GRB10	Q13322	594 aa		13.68	□□□□□ -0.22
PTPRF-215	ENST00000496447	C6orf10	Q5SRN2	563 aa		13.68	□□□□□ -0.22
PTPRF-215	ENST00000496447	METTL7B	Q6UX53	244 aa		13.68	□□□□□ -0.22
PTPRF-215	ENST00000496447	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	13.68	□□□□□ -0.22	1e-7	■□□□□ 8.6
PTPRF-215	ENST00000496447	KIRREL3	Q8IZU9	778 aa		13.68	□□□□□ -0.22
PTPRF-215	ENST00000496447	DNER	Q8NFT8	737 aa		13.68	□□□□□ -0.22
PTPRF-215	ENST00000496447	OR9Q1	Q8NGQ5	310 aa		13.68	□□□□□ -0.22
PTPRF-215	ENST00000496447	HASPIN	Q8TF76	798 aa		13.68	□□□□□ -0.22
PTPRF-215	ENST00000496447	PCMTD2	Q9NV79	361 aa		13.68	□□□□□ -0.22
PTPRF-215	ENST00000496447	AGL	P35573	1532 aa		13.68	□□□□□ -0.22
PTPRF-215	ENST00000496447	IL1R1	P14778	569 aa		13.68	□□□□□ -0.22
PTPRF-215	ENST00000496447	KLK7	P49862	253 aa		13.68	□□□□□ -0.22
PTPRF-215	ENST00000496447	ANO5	Q75V66	913 aa		13.68	□□□□□ -0.22
PTPRF-215	ENST00000496447	TFB1M	Q8WVM0	346 aa	Known RBP	13.68	□□□□□ -0.22
PTPRF-215	ENST00000496447	C9orf72	Q96LT7	481 aa		13.68	□□□□□ -0.22
PTPRF-215	ENST00000496447	WDR24	Q96S15	920 aa		13.68	□□□□□ -0.22
PTPRF-215	ENST00000496447	PSMC3IP	Q9P2W1	217 aa	Predicted RBP	13.68	□□□□□ -0.22
PTPRF-215	ENST00000496447	TAF6L	Q9Y6J9	622 aa		13.68	□□□□□ -0.22
PTPRF-215	ENST00000496447	ANXA9	O76027	345 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	ARIH2	O95376	493 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	CTDNEP1	O95476	244 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	EPHB3	P54753	998 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	OTULIN	Q96BN8	352 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	L2HGDH	Q9H9P8	463 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	SMG5	Q9UPR3	1016 aa	Known RBP	13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	IPP	Q9Y573	584 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	DIP2B	Q9P265	1576 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	CXCL11	O14625	94 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	RHOBTB1	O94844	696 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	MYL2	P10916	166 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	VDR	P11473	427 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	DSG3	P32926	999 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	ZNF280D	Q6N043	979 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	C4orf22	Q6V702	233 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	C3orf20	Q8ND61	904 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	USP13	Q92995	863 aa	Predicted RBP	13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	CCDC90B	Q9GZT6	254 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	KCNA3	P22001	575 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	TMED10	P49755	219 aa	Known RBP	13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	CYB5D1	Q6P9G0	228 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	LRIG3	Q6UXM1	1119 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	CBWD2	Q8IUF1	395 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	MTG1	Q9BT17	334 aa	Predicted RBP	13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	FAM129A	Q9BZQ8	928 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	EIF4E1B	A6NMX2	242 aa	Known RBP	13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447		H3BRB1	525 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	TMC7	Q7Z402	723 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	LINC00523	Q86TU6	105 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	CARNMT1	Q8N4J0	409 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	OSMR	Q99650	979 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	GLIS2	Q9BZE0	524 aa	Predicted RBP	13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	TUT1	Q9H6E5	874 aa	Known RBP	13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	AGO4	Q9HCK5	861 aa	Known RBP	13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	KIAA1257	Q9ULG3	409 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	TSC22D4	Q9Y3Q8	395 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	ALG6	Q9Y672	507 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	RIMS1	Q86UR5	1692 aa	Known RBP	13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	PQBP1	O60828	265 aa	Known RBP	13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	RNASEH1	O60930	286 aa	Known RBP	13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	NEK2	P51955	445 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	ALDH18A1	P54886	795 aa	Known RBP	13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	AGGF1	Q8N302	714 aa	eCLIP	13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	FAM71D	Q8N9W8	422 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	SYTL5	Q8TDW5	730 aa	Predicted RBP	13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	GOLPH3	Q9H4A6	298 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	SETD4	Q9NVD3	440 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447	ETAA1	Q9NY74	926 aa		13.67	□□□□□ -0.22
PTPRF-215	ENST00000496447		A0A087WZ62	844 aa		13.66	□□□□□ -0.22
PTPRF-215	ENST00000496447	SMAP	O00193	183 aa		13.66	□□□□□ -0.22
PTPRF-215	ENST00000496447	PMPCB	O75439	489 aa		13.66	□□□□□ -0.22
PTPRF-215	ENST00000496447	SPAG6	O75602	509 aa		13.66	□□□□□ -0.22
PTPRF-215	ENST00000496447	IL10	P22301	178 aa		13.66	□□□□□ -0.22
PTPRF-215	ENST00000496447	CENPC	Q03188	943 aa		13.66	□□□□□ -0.22
PTPRF-215	ENST00000496447	LRRC74A	Q0VAA2	488 aa		13.66	□□□□□ -0.22
PTPRF-215	ENST00000496447	ACAD10	Q6JQN1	1059 aa		13.66	□□□□□ -0.22
PTPRF-215	ENST00000496447	GPC2	Q8N158	579 aa		13.66	□□□□□ -0.22
PTPRF-215	ENST00000496447	FDXACB1	Q9BRP7	624 aa	Predicted RBP	13.66	□□□□□ -0.22
PTPRF-215	ENST00000496447	OLFML3	Q9NRN5	406 aa		13.66	□□□□□ -0.22
PTPRF-215	ENST00000496447	LZTS3	O60299	673 aa	Predicted RBP	13.66	□□□□□ -0.22
PTPRF-215	ENST00000496447	LSP1	P33241	339 aa		13.66	□□□□□ -0.22
PTPRF-215	ENST00000496447	CTCF	P49711	727 aa	Predicted RBP	13.66	□□□□□ -0.22
PTPRF-215	ENST00000496447	PTK7	Q13308	1070 aa		13.66	□□□□□ -0.22
PTPRF-215	ENST00000496447		Q4G0T1	1027 aa		13.66	□□□□□ -0.22
PTPRF-215	ENST00000496447	RASGRP2	Q7LDG7	609 aa		13.66	□□□□□ -0.22
PTPRF-215	ENST00000496447	CGRRF1	Q99675	332 aa		13.66	□□□□□ -0.22
PTPRF-215	ENST00000496447	PDCD2L	Q9BRP1	358 aa		13.66	□□□□□ -0.22
PTPRF-215	ENST00000496447	NOD2	Q9HC29	1040 aa		13.66	□□□□□ -0.22
PTPRF-215	ENST00000496447	CHST12	Q9NRB3	414 aa		13.66	□□□□□ -0.22
PTPRF-215	ENST00000496447	DPP7	Q9UHL4	492 aa		13.66	□□□□□ -0.22
PTPRF-215	ENST00000496447	E2F8	A0AVK6	867 aa		13.66	□□□□□ -0.22
PTPRF-215	ENST00000496447	RAG1	P15918	1043 aa		13.66	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms